Charadrius vociferus (killdeer): 104295243
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Entry
104295243 CDS
T08577
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104295243 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cvf03032
]
104295243 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
cvf03400
]
104295243 (TOPBP1)
DNA replication proteins [BR:
cvf03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
104295243 (TOPBP1)
DNA repair and recombination proteins [BR:
cvf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
104295243 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
104295243
NCBI-ProteinID:
XP_009893271
LinkDB
All DBs
Position
Unknown
AA seq
1519 aa
AA seq
DB search
MKGGEEPFFVKFIKSSGNSEYFFKALESIKEFQSEEHLQILEEETARNIKENDKSLYICD
PFRGGVFNHLKKLGCRIVGPQVVLYCMQSQRCVPRAEYPVYNMTMADVTVSCTSLEKDVR
EEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAASLKKPILLPSWVKALWDKSQQ
SIMRYTDVNMEDYTCPVFLGCTICVTGLSSSDRKEVQRLTAEHGGQYTGQLKMNECTHLI
VQEPKGQKYECAKKWNVHCVSVQWFSDSIEKGFCQDETIYKIEAGSKVSNIPSTSTPTNH
ASKPDNHTLSDVSHISNISLSGVNETACSSAMSSRLDPLPDELENLDISSFQAPEDLLDG
CRIYLCGFSGRKLDKMRRLINCGGGVRFNQLNEDVTHVILGENNDELKHFLDKTAHRPHV
VTAKWLLESFSKGCLHPVEQYIPPNYQLLENPILEQPGMKSILPKNNSLLKKEAVNVIKH
QKATDDDFLSQYVNNDSTLDEAEKLTSGTINDVTHFTVQGENQSSICNGSLGESSAQVEG
GLFVRKSFLVLGFGEEDESCIVDIITENAGKILPLQSRTIADYAVVPLLGCTVKPTVGDV
VTNTWLITCVEQQLLLDPQSNPLFTPVPVMEGVTPLVDCVLSFSQFTGAERDSLVYLAGL
LGARVQEFFVRKANAKKGMFASTHLVVREPDGSKYEAAKKWNLPAVTVAWLLQSARTGRR
ADESKFLVENAEAEDKESSITQLNKTPATVKSPDSEQPTYLLEAGKKPAVTPLDINRFQS
KAFQAVISHHTGKTTPLAQGGLPQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAALETP
GGPDQKNRKLSTPLSEVIGRNLKLALANSTRHTVALTASPQLTAAQPEVEEERKPLADVV
IYVSKKLSKKQSELNAIAASLGADYRWCFDETVTHFIYKGGQNDNNKEYKSVKERGIHIV
SEHWLLESAQEYKRLPESLFPHTYNPKMSLDISATQDVRLSSSSKLPSTGKPAEENEIIP
VDEDDAEDDLTTDQIKEMVSAGEEQVVTSESKGVLTQALEMRENFQRQLQEIMSATSLVK
PQGQRGSLSRNSFDGFPTTPDSTRSVRNGRSRALEALRQSRQALTDINTEPSQSEQIIWD
DPTAREERARLVSNLQWPNSPSQYTEHGQSNTNKKMEESAFKGSLADAEIAGIAVPEAGD
GDLIEGVKNPVCRDPETPIQDHLIPTPQAPSIAFPLANPPVAPQPKEKAVTKDEKADEEP
EKHRKFQLSSLNPPERFDYCHLIEELGGIVLEKQCFDPSCTHIVVGHPLRNEKFLASMAA
GKWVLHRSYLEACRGAGCFVQEEDYEWGSNSILNVLPGINVNQKKLALAAMRWRKKIHKG
KQETGIVEGAFSGWKVILNVDQTKEAGFRRLLQSGGAKVFSGHSVSLFKEATHLFADFSK
LKPDDARVNVAEAAAQGVNCLKPEYIADYLIQDPPPPMESYCLPEAESYLQNNTELGTGL
SQKRKAMGEMSRVKRSRIH
NT seq
4560 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtggtgaggagccattttttgtgaaattcataaagtcttctgggaactcggag
tatttttttaaagctcttgagtctataaaagaatttcagtcagaagaacatctccagatc
cttgaagaagaaacagcacgcaatataaaagaaaatgataaatcgctttacatttgtgat
ccttttagaggtggtgttttcaatcatctcaaaaagcttggttgtagaattgttggacca
caggtagtcctgtactgcatgcagtcccagcgatgtgtcccaagagctgagtatcctgtg
tacaatatgaccatggccgatgtaacggtatcctgtaccagccttgaaaaagatgttagg
gaagaagttcataaatacgtgcagatgatgggtggacgtgtgtacagagacctcaatgtg
tcagtaactcatcttatagctggagaagttggcagcaagaaatacttagtagctgcttct
ctgaaaaaacctattttgcttccctcttgggttaaggcactgtgggataagtctcagcaa
agcataatgagatacaccgatgttaacatggaagactacacttgtcctgtgttccttggc
tgtacaatttgcgttactggcttaagtagttcagacaggaaagaagtccaacgcctcact
gctgagcacggtgggcaatatacggggcagctcaagatgaatgaatgtactcacctcata
gttcaagagccaaaaggtcagaagtatgaatgtgccaaaaaatggaatgtgcactgtgtg
tctgtgcagtggttttctgatagcattgagaaaggcttctgtcaggatgaaacgatatat
aaaatcgaggctggatcaaaagtgagtaacatacccagtacgtcaacacctacgaatcat
gccagcaagcctgataatcataccctttcggacgtcagccacatttccaatatcagtttg
agtggtgttaatgaaacagcatgtagttctgctatgagcagcagactggatcctcttcct
gatgagctggaaaacttggatataagttctttccaagcccctgaagatttattagatggg
tgtcgaatatatttgtgtggcttcagtggcaggaagttggacaagatgagaaggcttatt
aattgtggtggtggtgttcgatttaatcaacttaatgaagatgttacccatgtcattttg
ggagaaaataatgatgagctgaaacactttttggacaagacagctcacaggcctcatgta
gtgacagcaaaatggttgctggagtcatttagtaaaggttgtctacatccagtggagcaa
tatatccctccaaattatcagctgctagagaacccaattttggagcaacctggaatgaag
tcaattcttcccaaaaataacagtctcttgaagaaagaagctgtgaatgttataaagcac
cagaaagctactgacgatgacttcctctctcaatatgtaaataatgattctacattagat
gaagctgaaaaactaacatccggaaccatcaatgatgttactcactttactgttcaagga
gagaatcaatcttccatctgtaatggttctttgggagagtcttctgcacaggttgaagga
ggcttgtttgtcagaaaaagttttcttgttttgggttttggtgaagaggacgagtcctgc
attgtagatattataacagagaatgctgggaaaattctgccgctgcaaagcagaacaatt
gcagactatgctgtcgtacctttattagggtgcacagtgaagccgactgttggtgatgtt
gtcacaaatacatggctgataacatgtgtggaacagcagcttcttttagatccacagtcc
aatccacttttcacaccggtcccagtaatggaaggagttacccctctggtagactgtgtt
ctttcttttagccagttcactggtgcagagagagattccttggtttatctggcaggactg
ctaggagccagagtccaagaattctttgtgcggaaagccaatgcaaaaaagggaatgttt
gccagtacccatctggtggtgagagaaccggatggttccaagtatgaagctgcgaagaag
tggaatttgccagcagtcactgtagcttggcttttgcagtctgcaaggacaggaaggaga
gcagatgaaagcaagtttttggttgaaaatgcagaggctgaagataaggagagttccatt
actcaacttaacaagacaccagcaactgttaaatctcctgattctgaacaacctacttat
ctccttgaagccggaaaaaaaccagctgtgactcctcttgatatcaacaggttccagagt
aaagctttccaagctgtaatctctcatcatactgggaagacaacccctcttgcacaaggg
gggcttccacagaaagagccatctttacatcttgataccccatcaaaatttctttccaaa
gacaagttattcaagccttcttttgatgtgaaggatgctctggcagctttggaaactcca
ggaggtcctgatcaaaaaaacaggaaactgagcacacctctctctgaagtcatcggcaga
aacttgaaattggcactggcaaacagcacaaggcatacagtagctcttactgccagccct
cagttgactgctgcacagccagaagtggaagaagagcgcaagcctcttgctgatgtggtt
atatatgttagtaaaaagcttagtaagaagcaaagcgaactgaatgcaatagcagcttct
cttggggcagactacagatggtgctttgatgaaacagtaacacactttatctacaaagga
ggacaaaatgacaacaataaggaatacaaatctgttaaagaacggggtatacatattgtt
tcagaacactggcttttagagagtgcccaagaatataaacggcttcctgaatctctcttt
cctcacacttacaatcccaaaatgagcctggacatcagtgccacgcaagatgtcaggctc
tcctcctccagtaaacttccatcaactggaaaaccagcagaggaaaatgagattattcca
gtggatgaagatgatgctgaagatgatttaactactgaccaaataaaggaaatggttagt
gcaggggaagaacaagttgtaacaagtgaatccaaaggagttttaacccaagcactagaa
atgagggagaacttccaaaggcagctgcaggagatcatgtctgccacctcactagtgaaa
ccacaagggcaaagaggatccctttcaaggaacagttttgatggttttccaaccactcct
gatagcacacggtctgtgcgaaatggccgcagtagggccttggaagcattaaggcaatcc
cgtcaggcactcacagatataaacacagagccatcccagagtgagcagatcatttgggac
gatcctactgcaagggaggagagggcaagacttgtcagcaacttgcagtggcctaatagt
ccttcccagtacactgagcatggtcagagtaacaccaataagaaaatggaagagtctgcc
ttcaaaggatctttagctgatgcagagattgctggtatagctgttcctgaggctggggat
ggagatttgattgaaggtgtaaagaatcctgtgtgtagagatcctgaaacaccgattcaa
gatcacttgatccccactccgcaggcccccagcatagctttcccactggctaaccctcct
gtggcaccacagcccaaagaaaaggctgttacaaaagatgaaaaggctgatgaagaacca
gaaaaacaccgtaaatttcagctgtcttctcttaatcctccagaaagatttgattactgc
catctgattgaggaattaggtggaatagtacttgagaaacagtgctttgatccaagttgc
acacacattgttgtgggacatcctcttcgaaatgaaaaattcttggcttcaatggcagct
ggaaagtgggttcttcatcgttcctacctggaggcatgtagaggagctggctgctttgtt
caggaagaagattatgagtggggaagtaattccatacttaatgttttgcctggaatcaat
gtaaaccaaaagaaactagcgcttgcagccatgaggtggaggaaaaaaattcataaaggg
aagcaagaaactggtattgttgagggagctttcagtggctggaaagtgatcctgaatgtt
gaccaaaccaaggaagcaggattcaggcgccttcttcagtcaggaggagcaaaagtgttt
tctggtcattctgtgtctctctttaaagaagcgactcatctctttgctgacttcagtaag
ctgaagccagatgacgccagggttaacgtagcagaggcggcagcccaaggagtgaactgc
ctgaaaccggagtacatcgctgactacctcatccaggatccacctcccccaatggagtct
tactgcctgccggaagctgaatcttaccttcagaataacacagaacttggaactggatta
tcccagaaaagaaaagcaatgggagaaatgagcagagtcaagcgatccagaatacactga
DBGET
integrated database retrieval system
