KEGG   Charadrius vociferus (killdeer): 104295556
Entry
104295556         CDS       T08577                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
cvf  Charadrius vociferus (killdeer)
Pathway
cvf03030  DNA replication
cvf03410  Base excision repair
cvf03420  Nucleotide excision repair
cvf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cvf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    104295556 (RFC4)
   03410 Base excision repair
    104295556 (RFC4)
   03420 Nucleotide excision repair
    104295556 (RFC4)
   03430 Mismatch repair
    104295556 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cvf03032]
    104295556 (RFC4)
   03036 Chromosome and associated proteins [BR:cvf03036]
    104295556 (RFC4)
   03400 DNA repair and recombination proteins [BR:cvf03400]
    104295556 (RFC4)
DNA replication proteins [BR:cvf03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    104295556 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    104295556 (RFC4)
Chromosome and associated proteins [BR:cvf03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    104295556 (RFC4)
DNA repair and recombination proteins [BR:cvf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     104295556 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    104295556 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 Rad17 AAA_lid_RFC1 AAA_30 AAA_16 AAA_22 AAA_11 DUF815 AAA_14 Mg_chelatase SLFN-g3_helicase AAA_28 AAA_24 RuvB_N AAA_19 TIP49_C AAA_5 DNAX_ATPase_lid AAA_7 AAA_3
Other DBs
NCBI-GeneID: 104295556
NCBI-ProteinID: XP_009893626
LinkDB
Position
Unknown
AA seq 422 aa
MQAFLKGPSSISTKPPAAKEKAAAGSSGECKRLKPIPWVEKYRPKNVDEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELFRQRVLELNASDERGIQVIREK
VKAFAQLTASGSRSDGKVCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLSDKIQQQRLLEVSEKEHVKISSEAVSYLVKVSEGDLRKAI
TFLQSATRLTGGKEITEKIVTEIAGVSYAWQFLLFAYVAVEKSCISLTVIRKSQFLRNLA
ELDCNDRKEKHEIPLLNNAWLNQRNPTLHLQKDFKFLVVIPKFFEKLETLAKNLINEGYA
VAQLVNQLHDAVVESEDYSDKQKSAIVEKLAEVDKCLADGADEYLQLVSLCALVMQQLTQ
NV
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgcaggccttcctcaaaggcccgtcttccatcagcaccaagccccccgctgccaaggag
aaggccgcagcggggagcagcggggagtgcaagaggctcaagcctatcccctgggtggag
aaatatcgccccaaaaatgtggatgaagttgccttccaggatgaagttgttgctgtgctg
aaaaagtccttggaaggtgctgatcttcccaatctgttgttctatggcccacctggaact
ggaaagacttctactattttagcagctgctagagaactctacgggcctgaattgttccga
caaagagtccttgagttgaatgcttctgatgagcgtggaatacaagtgattcgggaaaaa
gtgaaggctttcgctcagctaactgcatctggaagccgttcagatggtaaagtttgtcct
ccttttaaaattgtaatcctggatgaagcagactcaatgacttcagcagcccaggcagcc
ttaagacgcacaatggaaaaagaatctaaaacaacacgtttctgtcttatttgtaactac
atcagcagaataattgagcctctaacatctcgatgctccaaattccgcttcaagcctttg
tcagacaaaatccaacagcagaggctattggaggtttctgagaaggaacatgtgaaaatc
agtagtgaggcagtatcttaccttgttaaagtgtcagaaggggacttaagaaaagcaatt
acttttcttcaaagtgcgactcgcctaacgggcgggaaagagatcacagagaagatagtc
acagaaattgctggggtaagctatgcttggcagtttctcctgtttgcgtatgtagctgtg
gaaaagagctgcatttcacttacagttatccgtaaatcacaatttctaagaaacctggca
gaacttgactgtaatgataggaaagagaagcatgagattccattactgaataatgcttgg
ttaaaccaaaggaacccaactttacatcttcagaaagacttcaagttcttggtcgtcatc
cctaaattttttgagaaactggaaacactggcaaagaatctcataaacgaaggctatgct
gtcgctcagcttgtaaaccagctgcatgatgctgttgttgagagcgaagattacagtgac
aagcagaaatctgccatagttgaaaaacttgcggaagtagacaaatgcttggctgatggt
gctgacgaatacctgcagctggtgagtctctgtgcccttgtgatgcagcagctaacgcag
aacgtctaa

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