Cyprinodon variegatus (sheepshead minnow): 107081850
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Entry
107081850 CDS
T06110
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
107081850
NCBI-ProteinID:
XP_015225663
Ensembl:
ENSCVAG00000012361
UniProt:
A0A3Q2CWX3
LinkDB
All DBs
Position
Unknown
AA seq
1240 aa
AA seq
DB search
MTSRIPPWFFGISLLLLCLCCHHSNAYQLLDDRGSQSALDLTELIGVPLPPSVSFVGGFE
GYPAYSFGPDANVGRLTKSFIPDPFHYDFAVVVTAKPTTRRGGVLFAITDAFQKIVQLGV
ALSEVEDGAQNVILYYTDLETRGGTREAASFKMGDLTGRWARFTLTVQGAEIRLYMDCEE
YHKVAFSRSAQPLTFEASSGIFVGNAGGTGLPRFVGSIQQLVLKSDPKAPDDQCEEDDPY
ASGFGSGDEDYKDSKDTDEVRKIVEEREYPTPLPELDSIYGSPVRAPPSEISLIDDEDGD
VEESSGEEVESTTVRAGMIRTDASKIQPDTSLQVSSGQKGEPGEPGPAGPPGPPGPPGHA
SGEGGDPGPRGPQGPQGPPGPTGRPGKDGEPGMKGERGLPGATGFPGLQGDPGEKGEKGD
PGLGVPGPPGPPGPPGPPRRSSMEGSGFDDFDSDSEVIRGLPGPPGPPGPPGPQGSTTAD
VIPGPPGNPGKDGVKGEPGLPGVEGKDGEAGSPGEKGDKGEPGAGGPPGPKGDQGPPGFP
GLPGSPGNEGQPGPRGPPGPPGPPGPLGRGFAMTFEDLEGSGLLDGFGASSGPQGPPGLP
GPPGPKGKDGLEGPQGKPGQKGEPGIIGPPGLPGLGGMKGEQGEKGNKGDPGPKGEQGRD
GLSVPGPPGPPGPPGPVMNLQDLLLNATDGAFNFSGIFETQGLAGPKGPKGDIGLQGLQG
PQGIKGEKGEPYLIRADGSLMSDLAQFGAVGTKGIKGDNGVPGAPGVPGPIGPPGPKGEI
GFPGRQGRPGLMGPKGEKGDALGLPGPPGPPGLPGRPGTFNCPKGTVFPIPPRPHCKMPL
HPNGTIATGNCLGGPKGEKGERGLPGLPAPRSSFFPTGSWEIKGDRGIKGEKGEKGAAGS
PGQPGLPGRSGLVGPKGESVLGPPGRPGMPGPPGVPGYGRPGAVGPPGPPGPPGPPGMPH
IYGSAMTIPGPPGPPGPPGTPGTSSNSAFLKTFSTRESMMQQTSKDEEGTLAYVKATGSL
FLKVPQGWKEIQLGSLVYLPNNVIPQDEPRVAYQVRGETMQRVRSVKERLNLVALNQPHT
GNMMGLDMADRMCYEQAKAMGLAPNYRAFISSHRQDLVNVVYPGFRDSLPVTNLRGDVMF
RNWRSIFNGNGGPVNPRIPIYSFDGRDVLADPFWPKKSIWHGSTSRGLRVMDKHCETWQA
DNFSVMGQSSSLTSGLLLGQETRSCSTEYIVLCIETYKHS
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atgacttcacgcattcctccctggttctttggaatatctctcctccttctctgtctgtgc
tgccatcactccaatgcctatcagctgctggacgaccgcggttctcaaagcgccttggac
ctgacagaactgatcggcgttcccctccccccatcggtctcctttgttggggggttcgag
ggctacccggcctacagctttggcccagatgcaaacgttggccgactcacaaagtcgttc
atcccagacccattccattatgactttgccgtcgtggtgacagcgaaaccgaccacacgg
cgtggtggtgtgctttttgcaatcacagatgcatttcaaaagatcgtgcagttgggtgta
gccctgtccgaggtagaagatggtgcccagaacgtcatattgtactacacagacttggaa
acgagaggtggaaccagagaggctgcttcttttaaaatgggagacctgacaggacgatgg
gcaaggttcactctgactgtgcaaggtgcagagattcgtctctacatggactgtgaggaa
taccacaaagtggctttctccaggagcgcccaacctctgacgttcgaggccagctcaggg
atattcgtggggaatgccggtggaacgggccttcctcggtttgtgggttccattcagcaa
ctggtgttgaaatcagatcccaaagctccagatgatcagtgtgaggaggatgatccttat
gcatctggttttggaagtggagatgaagattataaagactcaaaggacacagatgaagtt
aggaagattgtagaagagagagaataccccacgcctttgccagaactggattccatatac
ggctccccagttcgagccccgccctcagaaatatcactaattgatgatgaagatggagat
gttgaggagtcctctggggaggaggtggagtccaccacagtaagagcaggaatgattcgg
actgatgcttctaagattcagcctgacacttcccttcaggtttcttcaggacagaaaggt
gaaccaggggaaccgggtccagctggtcccccaggaccccctggccccccaggacatgcg
tcaggtgagggaggcgaccctggaccaagaggtcctcaaggcccgcagggaccgcctggc
ccaaccggacgccctgggaaagatggcgagcctgggatgaaaggtgaacgtggtctgcct
ggagcaacaggtttccctggattacaaggagaccctggtgagaaaggagagaaaggggat
cctggtctgggggttcctggtcctcctggtcctcctggacctcctggtccaccaagaaga
tcttccatggaggggtctggatttgatgactttgacagtgattcagaggtcatcaggggt
ctcccagggcctccagggcccccaggaccacctggcccccaaggatccacaacagcagat
gttattccagggcctcctgggaatcccggaaaagatggagtgaagggagaaccaggactt
cctggagttgaaggaaaagatggggaggctggatctccaggagagaaaggagacaaggga
gagcctggagcaggcgggccgccaggaccaaagggagatcaaggcccaccggggtttccc
ggcttaccagggtcccctggcaatgaggggcagcctggtcccaggggtccaccaggacct
cctgggcctccaggacccttaggaagaggcttcgccatgacgtttgaggacctggaagga
tctggcctgctggatggttttggagcctccagtggtcctcagggcccaccaggactccct
ggacctccaggacccaaggggaaggatggtttagaagggccccaaggaaagccagggcaa
aagggggagcctggtattataggaccacctgggcttcctggtctgggtggcatgaaaggg
gaacagggagaaaaggggaacaaaggagatccaggaccaaagggagaacaaggtcgagat
gggctaagtgtgcccggccctccaggaccacctggacctccaggaccagttatgaacctc
caggatcttctgcttaatgcaacagacggtgccttcaatttctcagggatatttgaaact
cagggtctggctggacctaaaggtccaaaaggagacattggattgcaaggtttgcaaggg
cctcagggaataaaaggagaaaagggtgagccgtatctcatcagagcagatggatcctta
atgtcagatttggctcagtttggagcagtgggaaccaaaggaatcaagggagataatggt
gttcctggagcccctggagttcctgggcctattggaccaccaggacctaaaggagaaatt
ggtttccctggacgccaaggtcggccaggattaatgggacctaaaggagagaaaggggat
gcccttggcctgccaggacctcctggacctcccggactgccgggccgaccaggaaccttc
aactgccccaaaggaacagtgttccccatccctcccaggcctcactgcaaaatgcctctc
catcccaatggaacaattgcaacaggtaactgcctcggaggaccaaaaggagagaaggga
gagaggggtcttccaggtttaccggctccccgaagctcatttttccctacaggcagctgg
gagataaagggtgaccgtggcatcaagggggagaaaggagaaaagggggcggcagggtcc
ccgggacagccaggcctacctgggaggtccggcctggtgggtcccaaaggggagtcagtg
cttggacctcctgggcgcccagggatgcctggcccacctggggttccaggttatggcaga
cctggagccgtcggtcctcctggccctccaggacctccaggaccacctggaatgccccac
atatatggttcagcaatgaccatccctggtccccctggacctcccggaccacctggaacc
cctgggacttcaagtaactcagcatttctgaaaaccttttcgactcgggagagtatgatg
cagcagacatcgaaggacgaagaggggactctggcgtatgtcaaagcaacaggaagtctc
ttcctgaaggttccccagggctggaaggaaatacagctcggcagcctggtctacctccca
aataacgtcattccccaagatgagcctcgagttgcatatcaagttagaggagagacaatg
caaagagtccgttcagtcaaagaaaggctaaacttagtggccttgaaccaaccgcacacg
ggaaacatgatggggctcgacatggcggaccggatgtgttatgagcaggctaaggccatg
ggtttggcgcccaactaccgtgccttcatttcatctcacaggcaagacctggtcaatgtg
gtctaccctgggttcagggactctctgccagtaaccaacctcaggggagatgtgatgttc
aggaactggcggtccatattcaatggcaacggggggccagtgaatcccaggatacccatc
tactccttcgatggccgggatgttttagctgatcccttctggcccaagaaaagcatctgg
catggttccaccagcagaggtctcagagtgatggacaaacactgtgagacgtggcaggca
gacaacttctcagtgatgggccagtcctccagcctgacctcaggtctgctcctcggccag
gagacaagaagctgttccaccgagtacatcgttctttgcatcgagacctacaaacactct
taa
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