Cyprinodon variegatus (sheepshead minnow): 107081931
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Entry
107081931 CDS
T06110
Symbol
dhx36
Name
(RefSeq) ATP-dependent RNA helicase DHX36 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107081931 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107081931 (dhx36)
03012 Translation factors [BR:
cvg03012
]
107081931 (dhx36)
Enzymes [BR:
cvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107081931 (dhx36)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107081931 (dhx36)
Translation factors [BR:
cvg03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107081931 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
AAA_16
Motif
Other DBs
NCBI-GeneID:
107081931
NCBI-ProteinID:
XP_015225790
Ensembl:
ENSCVAG00000005470
UniProt:
A0A3Q2CGG3
LinkDB
All DBs
Position
Unknown
AA seq
1071 aa
AA seq
DB search
MSYRYEGGGGGRRSRRGGRGYRDGSRERLERRGGGCGRGARGNGSNFAQDSEGQNDRPPP
HLRGREIGLWYARYGAVRRKQADRRSRAVVHMDEARQEHITKLLNSVQSDQPDPGRSSRD
GYSSMSDNWQTAASSSGHCYFDGDLPEEVKHKSEEEEEEITSKQKKPNSTSKGASSAKAD
KDEPPDNWDEGDEEEEKVEKERPIRNDKDVEFLLQEVVRDPLMDEELKRDLQSKKTDPSY
KEMLKFREKLPSYSKREDLVRLINSNPVVVVSGETGCGKTTQVTQFILDDHINRGRGSTC
RVVCTQPRRISAISIAERVAAERAERVGNGKSCGYQIRLQSRLPRRQGSILYCTTGIILQ
WLRSDPMLSSVSHLVLDEIHERNLQSDVLLIIVKELLNVRDDLKVILMSATLNAEKFSKY
FDKCPMIHIPGLTFPVEELLLEDIIEMTRYRPLNTDRNPAWKRRFWQGRQSSSGKEEKEL
EYKESWPSYARTLQGRYSDSTIEAVEMLDNDEKIDLELILALIRYIVLNEGEGAILVFLP
GWDNISGLNDLLMAQQMFRSENFVIIPLHSLMPTVNQTQVFKRPPPGVRKIVIATNIAET
SITIDDVVFVIDGGKIKETNFDSDNNISTMLAEWVSLANAKQRKGRAGRVQPGKCYHLYN
GLRASMLEAYQLPEIMRTPLEELCLQIKILKLGSISHFLEKAMDPPSQKAVNLAIKNLTD
LNALDHRENLTALGVHLARLPVEPHTGKLILFGALFGCLDPVLTIAASLSFKDPFFIPLG
KEKMADMRRRTLSRNSKSDHLTIVYAFKGWEEAKQRGARYEREYCWDNFLSANTLQMLHN
MKGQFAEHLMHAGFVSSRNPKDPISNVNSDNEKLIKAVIVAGLYPKVAMIRPSYSKKRPG
VKVYTQSDGKVCIHPKSVNVEETEFNYTWLIYHLKMKTSSIFLYDCTEVSPFSLLFFGGD
ISIQKEEGDETIAVDRWIVFRSPARIAHLVKSLKKELDSLLQEKISNPAPVDWNNRQSKD
CAVITAIIDLLTTQERPAGSSKDDGRMWASAPRGKHVYFNEDDDDDDDNDD
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgagttatcggtacgaaggtggagggggaggaagaagaagcaggagaggaggtagaggg
tacagggatgggagcagagagaggctggagagaagaggaggaggttgcggcagaggtgcg
agaggaaacggttccaactttgcccaggactcagagggtcagaatgaccgaccgcctcca
cacctgaggggccgggagatcggtctttggtacgctcggtatggagccgttaggaggaaa
caagctgaccgcagatcgagggcagtggtccatatggatgaagccagacaagagcacatc
accaagctgcttaactctgtccagagcgaccagccggaccctggtagatccagcagagac
ggatattcctccatgtctgacaactggcagacagctgccagcagtagcggtcactgctat
tttgatggggatttgcctgaagaagtgaaacacaagtctgaggaagaagaagaagaaatt
acttctaaacagaagaaaccaaatagcacatcaaaaggtgcatcgtctgccaaggcagat
aaagatgagccaccagacaactgggatgaaggtgatgaggaggaggagaaggtggaaaaa
gaaaggccgataaggaatgacaaggatgtggagttcttgcttcaggaagtagtcagagac
cctttaatggatgaggagttgaaaagagatctgcaaagcaaaaaaacagacccgagttac
aaagaaatgctgaaattcagggaaaaactaccatcatattctaaaagggaggatctggtc
agactgatcaactctaaccccgtggtagtggtcagtggggagacgggctgtggaaagacc
actcaggtcactcagttcatcctggatgatcacatcaatagaggccgaggctcaacgtgc
cgtgtggtctgcacacagcctcgccgcatcagtgccatctctatagcggagcgtgtagca
gctgaaagagcagaaagggtaggaaatgggaaatcttgcggttaccaaatccgcctgcag
agccggttaccacggagacaaggttcgatactatattgtacgacaggaattattcttcag
tggctacgctcagatccgatgttatccagtgtcagtcatctggtgttggatgaaatccat
gaaaggaaccttcaatcagatgttttgctcatcattgtcaaggaattactcaacgtccga
gatgatcttaaagtcatcctgatgagtgccactctcaacgcagagaagttttccaaatat
tttgacaaatgcccaatgatccacatcccggggttgacattcccagtggaggagctccta
cttgaagacattatagagatgaccagatatcgtccactgaatacagatcgtaaccctgca
tggaagaggcgattttggcagggccgccaatccagctcagggaaggaggagaaggaactg
gaatacaaagaaagctggccaagttatgctcgcacgctgcagggcagatattctgacagc
accattgaggctgtggagatgttagacaacgatgagaagattgatctggaactgatcttg
gcactgatccgttatattgtgctcaatgagggggaaggagctatcttggttttcctgcct
ggctgggacaacatcagcggcctcaatgatctcctcatggctcaacagatgttccgatca
gagaattttgtcatcatccctctgcactccctcatgcccactgttaatcagacgcaggtt
ttcaaaagacccccaccaggagttagaaagattgtgattgcaaccaacatagctgagacc
agcatcaccatagatgatgttgtttttgtgatagatggaggaaagattaaagagaccaac
tttgactctgacaacaacattagcaccatgttggctgagtgggttagcttggccaatgcc
aaacaaaggaaaggacgtgctggcagggtgcagccaggaaagtgctatcatctgtacaat
gggcttagggccagcatgctggaggcttatcaattgcctgaaattatgaggacaccgctg
gaggaactctgcttgcagataaagatactgaagcttggctccattagtcattttttggag
aaggccatggacccaccgagtcagaaggcagtcaacctcgccatcaagaacctcacagac
ctgaatgccctggaccacagagagaatctgacagcgcttggtgtccacctggctcgtctc
cctgtagagccacacactggcaaactgatcctgtttggagctctttttggatgcctcgac
ccagtgctcaccatcgctgcttcgctcagcttcaaagaccctttcttcatacccctgggg
aaagagaagatggcagacatgaggagaagaactctgtccagaaactccaagagtgaccac
ctcactattgtctatgcctttaagggctgggaggaagccaaacagcggggagctaggtat
gagagagagtactgctgggacaacttcctgtctgctaacacactccagatgcttcataac
atgaaaggtcagtttgcagaacatctcatgcatgctggctttgtcagcagcaggaacccc
aaagaccctatatccaacgtcaactcagacaatgagaagttaattaaggccgttattgtt
gctggactgtaccctaaggtggcaatgatcagaccgtcttacagcaaaaagagaccaggg
gtaaaggtgtacacccagtctgacggaaaggtgtgcattcatcccaaatctgtcaatgtt
gaagagacggagtttaattacacatggctcatttaccacctgaagatgaaaaccagcagt
atcttcctgtacgactgcactgaagtgtccccgttctccctgctgttctttggaggagac
atcagcatccagaaagaagagggcgacgaaaccatcgctgtcgaccgctggattgtcttc
agatccccagcgcgcattgcccatcttgttaagagtttgaagaaagagctggattcactg
ttacaagaaaaaatcagcaacccggctcctgtggactggaataaccggcagtccaaagac
tgtgctgtcatcacagcaatcatagatctcctcaccacccaagaaaggcctgcaggcagc
agcaaggacgatggcaggatgtgggcgtctgccccgagagggaagcacgtttactttaat
gaggacgatgatgatgacgacgacaacgatgattaa
DBGET
integrated database retrieval system
