Cyprinodon variegatus (sheepshead minnow): 107082447
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Entry
107082447 CDS
T06110
Name
(RefSeq) neural-cadherin-like
KO
K27892
neural-cadherin
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cvg04515
]
107082447
Cell adhesion molecules [BR:
cvg04515
]
Cadherins
Cadherin related
107082447
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Laminin_G_1
Cadherin_CELSR2_9th
Ig_Shg
Cadherin_pro
RET_CLD1
EGF
hEGF
EGF_Teneurin
Cadherin_4
Big_9
EGF_2
EGF_Hmr-1
EGF_3
EGF_DL_JAG
Motif
Other DBs
NCBI-GeneID:
107082447
NCBI-ProteinID:
XP_015226620
Ensembl:
ENSCVAG00000016114
LinkDB
All DBs
Position
Unknown
AA seq
2914 aa
AA seq
DB search
MIWGVLLCCLLTPAAGYQKQGRLPFFHGHIFENSPAASKVNGLSIPVKRIDAQKWCPLTG
MHFKLFGNGSEDFRVFAHHKRGNVLLKTSRVLDRETRSEYLLSVDLCCQTCASESVIFQV
ALVKVDVLDTNDHEPTLLSTDNVHISLDDTTALRSVVYRLEAVDEDSGKNAELTYTSIPK
NGSFYVVPKTGEVLLVDSILGLLSTIQLYIYVRDHGWPPLSSKAVLIHISPKRWMTRQAD
LVGPGRTGRLPRALLESSTVLSLNVSEDAGVGSVLMSLNPTRFQSAAYELIYPESESSPV
TVGRDSGDITVTRRLDRETEPFLELTVKIQDKRGPDWYLNKVKLAITDVNDNVPEWNMKP
YPYLAVVSPEAAAGTFVYQLQATDEDEGKSGEVEYFLSDGGDGCFAVDKKTGQVVTTGLV
LQKEREYLLSVVALDGLGSHSAPAMVSIVAGARAPQFTNTSYAITIPENTPEGQPFLAVL
AISFQKEQISYSLLINPSSIFSIRQDTGEISLTKTLDYESDQRRYLLMVRASEEPGSLST
ATEVQVLITDENDCVPEFLQSIYSVDGVPETVTTATSLLQVLATDCDSGLNAELTYYTLS
PDFSISPHGTVFPARRLDYERPNHLYEFVVMAVDSGDEPHSGTTTVRVRMVNVNDEAPEF
SQPVYRTFVSEDAGPNTLVATVLAKDPDGDGITYSITAGNEEGNFVIDSQKGLIRLRSTP
LPKLQGLEYVLNVTATDDNASGGLHPLSSNARVVVGVDDVNNNKPIFEQCQQYREQASVL
ENQPAGTFVLQVHAVDADEGANGKVKYGLMHRDSAMPAFRIHPDTGVIVTARRFDRERQR
EYSITVTATDWAEEPLIGICQLAIQILDQNDNSPKFENLRYEYFLREDTLVGTSFLRVAA
HDDDFGTNAAITYSMSVEQPEYLQVNPVTGWVFVNQPISQRTYITRDIIATDGGNRNTSV
ELAVTITNVKNQPPQWEKDSYNVVIPENTARDTPIVTIKATSQLGDPRVTYNLEDGMVPE
TNMPVRFYLSPNREDGSASILVSEPLDYETTPFFSLRVRAQNVAAVPLAAFTRVYVNITD
VNDNVPFFTSSIYESSVTEGAQIGTSVLQVSAHDKDLGLNGEITYSLLSDSSGDHNFFRI
DPQYGIIYTEAVFDREARSSYLLEVQSEDGQESARPGKNKQPNTDTAYVRVFISDVNDNK
PVFAQRLYEVGVDENADVGLAVVTVSATDEDEGANAKLRYQITSGNKGGAFDIEPEVGTI
FISQLLDYEKQKRYKLLVLASDGKWEDYAAVVVTIVNKNDEAPVFSMNEYYGSVTEELDG
SPVFVLQVTATDPDKDADQGAIRYSIHGQGAESHFMINDITGEMYAQRTMDREERAVWRF
VVMATDEEGEGLTGFTDVIINVWDINDNAPTFVCAPDNCHSSVAENSPPGTFVVEMTAVD
LDDAAVGQNAILTYRIIENAQNSDNANLFTIDSSTGTVSVAADGLDRERADRHHLVVEAR
DGGGMIGTATVTIVVTDINDHVPKFIEDWCGARVPESTLEDSSLLELSAVDPDDGRNGQL
SYSIFAGDTEQRFYIVSHKLEQKGTLRLKKKLDFEHPDEQRFNLTVKVEDSNFSSLIHCM
ILVEDENDNAPVFTPSFHLLSPVPEDVPVGTSIIQVIASDSDSGPNGDIFYSILPHSDPY
GHFRVNRGGVVTVTHSLDRETVAGYELVVMATDRGTPALTGSVTVHLPLLDMNDNGPELE
MLYAPVLWENSPAPQVVWLNGSSTLLHVVDRDSPEHGPPFLISLPSEYSADFHLQDHGNG
SATLTTLRRFDRERQREYHLPVVMIDSGLPPITATSTLIITIGDHNDNAHQAGEKDVYVH
SRKGRMGNAALGKVYAPDPDDWDNKTYSLETSAAKYFSVNQSSGVLTVRQNTPVGSYWLR
VGVSDGVWPDVIAGVRVHIRELEEKAIQSSASLRLTGITAREFIDSNVEGKSRLEAFWDF
LTETLSVRPGSINIFSVADREARTVDIHFYVLTDNGYLRPEKLHTALAAHKKKLQSILRV
NVSQVQVDECVRTDCKTSGGCYTQLSVSDSPALIDSGALSLASVKVTSSAVCGCAAREMT
HRTCSSYPTYPCLNGGTCFDTQNGYRCHCPPQLEGPDCQQTRLSFLGNGYAWFPPIRPCF
DSHLSLEFMTEEEDGLLLYAGPLATLLPGDNEDYIAIELIGGTPSLKINHGSGTLVLQLT
NVGVSDKLWHRLDVRTNSKEVRLTLDRCSSAVVMEAEGVESWAMTEDRSSCEIRGVTPNR
DKYLNVSHVLQLGGVNENISYEYPQLQHKHYTGCIRNLIVDSKLYDLGSPAESFSTSPGC
SLIDNHCTDLEQNPPCGKRGSCHGEWGSFSCLCEKGFTGPHCDQVTPEFSFDGRSHIQLQ
LLWSLPARRTQVQIGVRTRALTGVILSLLSQEQSEYLRLEVFHGLLAVLYNLGDGDYNIS
LPYHRLDDGEWHEVELDRYGREFTLRLDGGGGRLEVTASPGQSQEIIIDPSVVMLGNSFP
SGHNRSFLGCLRDVRLNGRSIPLDQDQHSEGLQVLVASQGVSVGCYSDSCRKHHCSPPLV
CVDLWRQHDCRCPAGHMTKETSVGRVCIYTLCASRPCRHGTCVAHSPSRYSCHCSEGYRG
RHCEVALAVFYSEDSNSLSLSSMFAISICVMAFLVLMLGLFLYSCWRRHKGLKEGVYHVS
AHHGEWEDIRENVLNYDEEGGGEQDQNAFNMVELQRSLQPSPAQSLRYSYPHNSSSYPQT
KLPQDNNKKGMANGNGSAAIALRLAIPPSEAETLSSPLTFRRSQRAFSFSSQDLARYLCE
VIRDMEHAEDPGSLTTPRRPSGKEHSLASVRSLSSLSASQGSEVRLHAAQITRMDTFRAL
RAVMCDLRGDSKIPDSQRDKLKESRGQLKCEKNG
NT seq
8745 nt
NT seq
+upstream
nt +downstream
nt
atgatttggggtgttttgctgtgttgccttttaacgccggcagccggatatcaaaaacag
ggtcgactgcctttctttcatggacatatttttgagaactcgccagcggcttcgaaagta
aacggactcagcattccagtgaagcgcatcgacgcgcaaaaatggtgcccgctgaccggg
atgcactttaaattgtttggaaatggcagtgaggattttcgtgtctttgcgcaccacaag
cggggaaatgtgttgctgaaaacttccagggttttagacagagagacgcgctcagaatac
ctgctgagcgtcgatttgtgttgccagacttgcgcgtcggaatctgtcattttccaggtt
gctttggtgaaagtggacgtgttggacaccaacgaccacgaaccgaccttactgagcaca
gacaatgttcatataagtttagatgacaccactgcgctccgtagtgttgtttacagactg
gaagctgtcgatgaagacagcgggaaaaacgcagagttgacgtatacctccataccaaaa
aatggcagtttctatgttgttccgaagacgggggaagttttgcttgttgactctatcttg
ggcctgctttctactatacaattatatatttacgtgcgagatcacggctggccccctttg
agcagcaaagctgtgttaattcacatttctccaaaacgatggatgacgcgccaggctgat
ttagtgggaccagggaggacaggacgattaccgagggcgctcctcgagtccagcaccgtg
ctttccctaaatgtttctgaggatgccggcgtcggctcagttctaatgagtctaaatccc
accaggtttcagtcagccgcctacgagctcatttatccggaatcagagagctctccagtc
accgtgggccgcgacagtggagatataacagtaacccggaggctggatagggagacggag
cctttcctggagctcactgttaagattcaagacaaacgaggccctgattggtacctgaac
aaggtgaaactggcaatcactgatgtcaacgacaacgtccctgagtggaatatgaaacca
tacccgtacttggctgttgtgtctcctgaggcagcggcaggaacatttgtgtaccagcta
caggcaactgacgaagatgagggtaaaagtggagaagtggagtacttcttgtcagatggg
ggcgatggctgctttgctgttgacaagaagacaggacaggtggtgaccacggggctggtt
cttcagaaggagagagagtacctgctaagtgtggttgcccttgatggcttgggaagccac
agcgcacctgccatggtatctatagtggcaggggcccgagcaccgcagttcaccaacacc
agttatgccattaccataccggagaatacccctgaaggacagcccttccttgcggtatta
gctatttccttccagaaggagcaaatcagctacagcctgctgatcaatcccagcagcatt
ttcagcattcggcaggacactggagagatcagccttaccaagacactggattatgagagt
gaccagagacgctaccttctgatggtgcgagctagtgaggagcctgggagcttgagcact
gccacagaggttcaggtgttgataacggatgagaacgattgtgtcccagagttcctgcag
tccatctacagtgtagatggagtgcctgagacagtaaccacagcaacatctctactgcag
gttttagccacagactgcgactcgggattaaacgctgagctcacctattacaccctgagc
ccggatttcagcatttcacctcacgggactgttttccctgcaaggcggctcgactatgag
aggcctaaccatttgtatgagtttgtggtgatggcagtcgacagcggggatgagcctcat
tctggcaccaccacggttcgtgtgaggatggttaatgtcaacgatgaagcccctgaattc
tcccagcctgtgtatcgaacgttcgtttccgaggacgccggtcccaacacgcttgttgcc
acagtcctggccaaagatccagatggcgatggcataacctactccataaccgcaggcaat
gaagagggaaactttgtcattgacagccagaaaggtttgatccgtctgcgctctactccc
ctgccaaagcttcaaggtttggagtatgtcttgaatgtaacagccacagatgacaatgca
tcaggcgggctgcaccctcttagttctaatgcccgggtcgtcgttggagttgatgacgtt
aacaacaacaaaccaatatttgagcagtgccagcagtaccgagagcaggcttcagtgctg
gagaaccagccggcggggacttttgtgttgcaagtgcatgcagtggatgcagatgaggga
gcaaatgggaaagtgaaatatggcttaatgcatagagacagcgccatgcctgccttcaga
atccatccagacacaggagtgattgtgacagctcgacgcttcgacagggagcggcagaga
gagtattcaattacagtaacggccactgattgggcagaggagccgctcattggcatctgt
cagctcgccatacagatactggaccagaatgataacagccccaagtttgagaatttgcgc
tatgagtattttttaagagaagacaccttggttggtaccagtttccttcgtgttgcagct
catgatgatgattttggtactaatgcagccattacttactccatgtcagtggagcagcct
gagtacctgcaggtcaaccctgtgactggatgggtctttgtcaaccagcccatatctcag
agaacctatataacacgggacatcattgcaacagatgggggaaatcgcaacacttctgtg
gagctggcagttaccattaccaacgtgaagaaccagcctcctcagtgggagaaagacagc
tacaatgttgtcatacctgagaatactgccagggacacacctatagtgacaataaaggcc
acctctcagctgggtgacccgagagtgacctacaaccttgaggatggcatggtgcctgaa
accaacatgccagttcgtttctacctctcaccaaaccgtgaggatggatctgcttccatt
ctggtgtcagagccgctggactatgagaccacaccattcttttctttaagggtccgagca
cagaatgtcgctgcggtccctctagcagcttttacaagggtgtatgttaatattacagat
gtcaacgacaatgtgccgttttttacatcctctatttacgagtcctcggtaacagaagga
gcccagatcggaacttcggttctccaagtgtctgcccatgacaaagacctgggtcttaac
ggagagatcacttactctttgctcagcgacagcagcggcgaccacaacttctttcgtatt
gacccccaatatggaatcatctacacagaagcggtatttgatcgggaagcccgtagttcc
tacctgctcgaggttcagtcagaagatggccaagagtcagctcgacctggcaaaaataaa
cagcccaacacagacacagcatatgtgagggttttcatcagcgacgtcaatgacaacaag
ccagtctttgctcagcgactgtatgaagtcggtgtcgatgagaatgcagatgttggcctg
gctgtcgtcaccgtcagcgccactgacgaggatgaaggagccaatgccaagctccgctac
cagataacatctggcaacaaaggaggtgcttttgacatcgagccggaggttgggacaatc
ttcatttcacagttattggactatgaaaagcaaaagagatacaagttgctggttcttgcc
tcagatggaaagtgggaagactatgccgctgttgtggtcaccatagtcaataaaaacgat
gaagcacctgtgttttctatgaatgagtactatggatcggtcacagaggagcttgatggg
tctcctgtttttgtgctacaggttacagccactgacccagacaaagatgcagaccaggga
gccatcaggtactccattcatggccaaggtgctgagtcccatttcatgatcaatgacatc
acaggggagatgtacgcccagcgaaccatggaccgagaggagcgggccgtctggcgcttt
gttgttatggcaacggacgaagaaggcgaggggcttactggctttacagatgttattatc
aacgtgtgggacatcaatgacaatgccccaacctttgtgtgtgcacccgataattgccat
agcagtgtggcagaaaattcacctcctggaacgtttgttgtggaaatgactgctgtggat
ctggacgatgcagctgtgggtcaaaacgcaatcctcacctaccggattatagagaatgca
caaaattcagacaatgcaaacctgtttactattgattcaagcactggcaccgtatccgtg
gcagcagacggtctggatagagagcgtgctgataggcaccacctggttgtggaggccagg
gatggtggtggtatgattggcacggccactgtcacaattgtggtgacagacatcaatgac
catgtgccaaaatttatagaggactggtgtggtgctcgtgtacctgagagcacacttgag
gactcttccctcttggagctgagtgctgtggaccctgatgatggtagaaatggtcagttg
tcatacagcatctttgcaggggatacagagcagcgattctacatagttagccacaaactg
gagcagaagggcactctaagactgaaaaagaagctggactttgagcatccagatgagcag
aggtttaacctgacagtcaaagtggaggactcaaatttttccagtcttattcactgtatg
atccttgttgaagatgaaaatgataatgcgcctgtttttaccccaagttttcacctgctg
tcccctgtacctgaggatgtaccagtaggaaccagcataattcaggtcatagcctctgat
tctgactcaggcccgaacggagatattttttacagcatcctcccacattcagacccctat
ggacacttcagagtcaaccgaggtggtgttgtcactgtcacgcattcactggatagggag
acggtggcaggttatgagctggttgtcatggcgacagaccgtggcaccccagcccttact
ggcagtgtcacggtccacttgcctttgcttgacatgaatgataacgggccagagctggag
atgctctatgctccagtgctgtgggagaacagtcccgctcctcaagtggtctggcttaac
gggagctcaactttacttcatgttgtggacagagactccccagagcatggacctccattc
ctcatctcccttccctcagagtactctgctgacttccaccttcaggaccatgggaatggc
tctgccacactcaccaccctccggagatttgacagagaaaggcagagagagtaccattta
ccggtggtaatgattgacagtggacttccaccgataacagccacaagcactctcatcatc
actattggtgatcataacgataacgcccatcaggcaggggagaaagatgtctatgtgcat
agccgcaagggaaggatgggaaatgcagctctagggaaggtgtatgccccagatccagat
gattgggacaacaagacctacagtctggagacaagtgcagccaaatactttagtgtgaat
cagagctcaggagtgctgactgtccgacaaaacactccagtaggcagctattggttaaga
gttggagtgtctgacggcgtatggcctgatgtgatagcaggagttagggttcatatcaga
gagctggaggaaaaggccattcagtcgtctgcttctctgcgtttgacaggcattacagca
agagaatttatcgactcaaacgtcgaggggaaaagtcggctggaggcattctgggacttc
ctgactgaaaccctgtctgtcagaccaggaagtatcaacattttcagtgtagcagacaga
gaggcgagaacagtggacattcatttctatgtgctaaccgataatggctacttgcgccca
gagaaactgcacaccgccctagcagcacataaaaagaagctgcagtcaatcctccgtgtg
aatgtgagccaggtgcaggtagatgagtgtgtgcgcactgactgtaagacatccggcggc
tgctacacacagttaagcgtcagtgactcacccgccttgatagactctggtgctttatcc
ctggcttcagtgaaagtgacatcttcagctgtgtgtggctgtgctgctagagaaatgacc
caccggacgtgctcctcttacccaacttacccctgcctcaatggagggacatgcttcgac
acacaaaatgggtacaggtgccactgccccccacagctcgaagggccagactgtcagcag
acgagacttagtttccttggtaacggctatgcctggtttcctcccataaggccatgcttt
gatagccatctttcactcgagtttatgacagaggaagaagacggactgcttctgtatgca
ggccctttggccactcttttaccgggggataatgaagactacatcgccatagaactgatt
ggtgggactccaagccttaaaatcaaccatggttctgggaccttagttctccagttaaca
aatgttggagtgagtgacaaactttggcatcgacttgatgtgaggaccaacagcaaagaa
gtgcgcctaaccctggatcgatgctcaagtgcggtagtcatggaagccgagggagtggaa
tcatgggcgatgacagaggatcgctcatcctgtgaaatacgaggggtcacaccaaacagg
gataagtacctgaacgtaagtcatgttctgcaactaggaggagtcaacgagaacatatca
tatgaatatccacagctgcaacacaaacactatactggatgtataagaaacctgattgtg
gacagcaagttgtatgaccttggttcccctgctgaatccttcagcacttcgccaggctgc
agtcttattgataaccactgcactgacttggagcagaatcccccctgtggaaagcggggc
agctgtcatggggaatggggctctttcagctgcctgtgtgaaaaagggtttacaggcccg
cattgtgatcaagtgactccagagttttcattcgacggccggagccacattcagctgcag
cttctgtggtccctgcctgcaaggcgaacacaagtacagattggggtccggactcgtgcg
ttaactggggtcatccttagcttgctgtcccaggagcagagtgaatacctgcgtttagag
gttttccatggtctgctggctgttttatacaacctaggagatggagactacaatatctct
ctgccgtaccatcgtctggatgacggggaatggcatgaggtggagttggatcggtacggc
agagagttcaccctaaggctggatggaggtggggggcgacttgaagtcacagcctcacct
ggccaaagtcaggagatcattattgacccctctgtggtcatgcttgggaactcttttcca
tcaggacacaatcgcagttttcttggctgtttgcgtgatgtgaggcttaacggccgctcc
attcccctggatcaggaccagcattcagaaggacttcaggtgttggttgcttcgcagggc
gtctctgtcggctgctactcagattcctgcagaaagcatcactgctcccctcccttggtc
tgtgtggacctctggagacagcatgattgcaggtgccctgcgggccacatgaccaaagag
acctccgtgggcagagtgtgcatttacacgctctgcgctagccggccgtgtcgacatggc
acgtgcgtggctcactcgccgtcccgctactcgtgccactgcagtgagggctaccggggg
cggcactgcgaagtggcccttgccgtgttctacagtgaggatagcaacagcctcagcctc
agctccatgtttgccatcagcatctgtgtcatggcctttctagtgttgatgctggggctg
tttctttactcctgctggaggagacacaaaggcctgaaggagggtgtttaccacgtgtct
gcacaccacggcgagtgggaggacatccgagaaaatgtgctcaactacgacgaggaaggt
ggcggggaacaggaccagaatgcttttaacatggtggagctgcagcgctccctccagccc
agccctgcacagtccctacgctacagctatccgcataactccagctcctacccccagacg
aagcttcctcaagacaacaacaaaaaggggatggcaaatgggaatggcagtgcagctatt
gcactgcgtctggccatccctccctcagaggctgaaaccttgtcctcacctctgaccttc
cgccgctcacaaagagccttctccttctccagccaagacttggctcgctacctttgtgag
gttatcagagacatggagcatgcagaggaccctggaagcttgaccacaccacgccgtccc
tctggaaaggagcacagcctggcctctgtgcgctccctaagctctctcagtgcatcccag
ggttcggaagtcaggcttcacgccgcccagataacccggatggacacatttagagccctt
cgtgccgtgatgtgtgatctaagaggagactccaagattccagacagccagagagacaaa
cttaaggagagcagggggcagttgaagtgtgagaagaacgggtga
DBGET
integrated database retrieval system
