Cyprinodon variegatus (sheepshead minnow): 107082480
Help
Entry
107082480 CDS
T06110
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107082480 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107082480 (exosc1)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
107082480 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
107082480 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
107082480
NCBI-ProteinID:
XP_015226665
Ensembl:
ENSCVAG00000016748
UniProt:
A0A3Q2E9T5
LinkDB
All DBs
Position
Unknown
AA seq
194 aa
AA seq
DB search
MSPLRLCVPGEKLCSVDDCRAGTGVYQRHGYIYSSLAGYVLKKNEGEELPVISVVRETEA
QLLPDVGAIVTCKVTGINSRFAKVHILYVGSTPLKDRFRGTIRKEDVRESEKDKVDIHKS
FRPGDIVLAKVISLGDVQSTYLLTTAENELGVVVAHSEAGAQMIPISWREMQCPQTNAKE
FRKVARVQPEYLEA
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccctgagattgtgtgtcccaggtgagaaactgtgcagtgtagacgactgcaga
gctggcactggagtgtatcagcgacatggctacatatattcctccctcgctggctatgtg
ctgaagaaaaacgagggagaggagctaccagtgatatctgtggttagggaaacagaagca
cagctgctgccggatgttggagccatagtcacctgcaaggtgactggcatcaactccagg
tttgcaaaggtccacattctttacgtcgggtccacaccactgaaagatcgcttcagaggg
accatcagaaaagaagatgtcagagaatctgagaaagacaaggtggacatacacaaaagc
ttccgacctggtgacattgttctggcaaaagttatttccctcggagacgttcagtccaca
tacttgctgacgacggcagagaatgagttgggtgtggtggtggctcacagcgaagcaggt
gcccagatgatccccatcagttggcgtgagatgcagtgcccgcagaccaatgccaaagag
tttcggaaagtggcccgagtgcagcccgaatacctggaagcatga
DBGET
integrated database retrieval system
