Cyprinodon variegatus (sheepshead minnow): 107082503
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Entry
107082503 CDS
T06110
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
107082503 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cvg01009
]
107082503 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cvg04515
]
107082503 (pcdh20)
Protein phosphatases and associated proteins [BR:
cvg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107082503 (pcdh20)
Cell adhesion molecules [BR:
cvg04515
]
Cadherins
Protocadherins
107082503 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
DUF6899
TM_ErbB1
FAM176
Motif
Other DBs
NCBI-GeneID:
107082503
NCBI-ProteinID:
XP_015226709
Ensembl:
ENSCVAG00000015357
UniProt:
A0A3Q2D3L6
LinkDB
All DBs
Position
Unknown
AA seq
887 aa
AA seq
DB search
MLRSRHPSKKGRIWGFYILMLYTSPLCCLANFSQAKELIYTIKEGLPKGTFIGAIGEDLR
LDFTVEPPFSFSLTQKKVTEQYVNINNTTGELYTSAAEIDRETLCPYSSDKQGCFFSLDV
FVLPQQYFQLVKVKLLIEDVNDNRPKFPMDEICMFVPENAQINSRFAVEQSAVDPDLGIF
GVQTYWLVNDFGVFTLDVEENDGGELTPFLIITDFLDRETQDEYITDIIAEDGGTPPLLG
AATLKIAITDVNDNCPKFTESQINVTLHGNTSKGTHLARLHAFDPDLGTNAEISYAYSER
VPRDTRSLFHLDKITGGIKLARKIDSATATFYKLTVLANGPGCIPAVATVNVHVIKLVTG
PPDILPRYIASEKDGVVTLKESEPAFSPIAFFTIKNMDKTHRVDCYLEGNGPFRLVPYQQ
LENEYLLETTDTLDYERIQEYELIVVANNTLGMVIKTFLKVQVLDENDNAPVFQQSLVEI
SIEENNSPNTFLTQLQASDPDSEGRGEVIYILGGDAPGIFAVDRLTGVLTVATSLDREEK
EKYRFIVRAVDQGTPRRESLATVVVTVLDRNDNSPRFINKDFTFFVPENFPGFGEIGVLS
VTDADAGKNGWVALSILNGSDIFMIDTGRGALRAKTPLDREQQGTYQLWIEAADGGVPAL
SSITMVTVLLLDVNDNPPIVLFPQSNQSYMLVLPSTAPGTSIAEVYAVDKDTGMNAVIAY
SIIKRKGGEPGSFAIDPQTGNITLMRELSNRGLYSLLVKVTDHGQPEPLYSTVMVNFFVN
ETVSNESYIQSLLTRDADIEVEEKPWYGGQMTDGPERYELFPCRSVLIALSVVCLGLFFL
VVILISYICCKRFKKIRHKRSEVEVPLKMKNGSTHDLNRKLRQMSKM
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgttaaggagtaggcaccccagcaaaaaaggaaggatatggggtttttacatcctcatg
ttgtacacctcccccctctgctgtttggcaaatttcagtcaagcaaaagagctcatctat
acaataaaggagggattacccaaagggactttcattggagctattggagaagacttacgt
ttggattttacagttgagccccccttttccttcagtctcactcaaaagaaggtcacggag
cagtatgtaaacataaataatactactggggagctttacacatctgccgctgagattgac
agggagaccctctgtccttacagctcagacaagcagggatgcttcttttcactggatgtg
tttgtgttacctcagcagtactttcagcttgtcaaagtaaagcttttgattgaagatgtg
aacgacaacaggccaaagttccccatggatgaaatctgcatgtttgtcccagaaaacgca
caaataaattcccgttttgcagtggagcaatcagctgttgacccagacctgggaatcttt
ggggtccagacctactggctggttaatgactttggtgtgttcactctggatgttgaggag
aatgatggaggtgagctgacaccattcctcattataacagactttttggacagagagacg
caagatgaatacatcacagatatcattgctgaagacggagggacccctcctctacttgga
gcagctactttaaaaattgccatcacagatgttaatgataactgtcctaaatttacagag
tctcaaattaatgttactctgcatgggaatacaagcaaaggcacacatttggcacgtttg
catgcttttgaccctgaccttggtactaatgcggagatcagctacgcttacagtgaacgt
gtgccaagggacaccagaagtttgttccatttggacaaaattacaggagggataaagcta
gccagaaaaatagactctgccacagccacattctacaaactcactgttctagccaatgga
cccggctgcatccctgcggttgcaactgtaaatgtccatgtcataaagttagttaccggc
ccccctgatatcctacctcggtacattgcatctgaaaaggatggagtggtgacactgaaa
gagtctgagccagctttttctccaatagcattctttactattaaaaacatggacaaaacc
cacagggtagactgttatttggaagggaatggtcccttcaggcttgtcccatatcagcag
ttagagaacgagtatttactagaaacaacagatactttggactatgagaggatacaggaa
tatgagctaatagtggttgctaacaatactctgggtatggtcataaagactttcctaaag
gtgcaagttttggatgagaatgacaatgcaccagtgtttcaacagtctttggtggaaata
tcaattgaggaaaataattcacctaacacatttcttacccaacttcaagcctcagatcca
gacagtgaaggccgaggagaagtcatttacatccttggtggtgatgctcctgggattttt
gctgtggatcgtctcacaggggttctgactgttgctacatctcttgacagggaggaaaaa
gaaaaatatcggttcatagttagagcagtagatcaggggacgcccaggagagagtcactc
gctacagtggtggtgaccgtattagatcgtaacgacaacagtccacgttttattaataag
gattttaccttctttgtaccagaaaactttccagggtttggggagattggtgtcctctct
gtcacagatgctgatgctggtaaaaatggatgggtagccctttccatcctcaatggcagt
gatatcttcatgatagacactggccgcggtgcattgagggccaagactcctctggatcgt
gaacaacaaggaacataccaactttggattgaggctgctgatggtggggtgccagcactc
tcctctattacaatggtgacagtgctcttgttggatgtaaatgacaacccgccaattgtc
ctcttccctcagtccaaccagtcctacatgctagtgctacccagtacggcacctggaaca
tcaattgcagaagtatatgcagtggacaaagatacagggatgaatgcagtaattgcctac
agtatcattaaaaggaaaggtggtgagccagggtcattcgccattgacccacaaacagga
aacataacattaatgcgagagctcagcaacagagggctttatagccttctggtgaaggtt
actgatcacggccagcctgaaccactttactcaactgtcatggttaacttctttgtcaat
gaaacagtgagtaacgagagttacatccaaagtcttttaacccgagacgctgacatagaa
gttgaagaaaagccctggtacggtggacagatgactgatggtcctgagagatatgaactg
tttccctgtcgctctgtcctcattgctctttcagtggtatgtctggggttgttttttcta
gttgttatattgatatcatatatatgctgtaaaagattcaaaaagataagacacaaaaga
tcagaggtggaagtacctttaaaaatgaaaaatggctcaacacatgatttgaacagaaaa
ctcaggcagatgtctaaaatgtga
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