Cyprinodon variegatus (sheepshead minnow): 107082656
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Entry
107082656 CDS
T06110
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107082656 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107082656 (patl1)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107082656 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
107082656 (patl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
107082656
NCBI-ProteinID:
XP_015226928
LinkDB
All DBs
Position
Unknown
AA seq
900 aa
AA seq
DB search
MFRFQSLDDDCTLEEEDDGLIEEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAELDERDGL
GVGPGLGGGEDASSSLGLPSSSVQLSSSSSGLPTQDVDERSGGSDLAESLARFILDADPA
IAGVGAAERPAPSPGSAGSVLSALRGLDQSRVLQQPSSMAPKQPPQHQLPQGGSGEGRSP
VLAFLPPPCSAISSSSTCCSETLLCLSFGDFVISLRTITDIKPVAKSDAELSDSSSLTRC
KCLQLQVSFCSLHLPPPQEGSLMSIIKEAGLPKRPPQGRADEGHDLSERAPPPRSSSPVI
GSPPVRAVPIGTPPKHPMSLNHQIHHPTAVHVRAPIQHRYPAPFPERLSPNTLLNIANSP
LCRGPFPPRVGPVLSQLQRAQLLNSQVAGFPRGGPGPPLLAGGGFRPFFGGPPPPHGHRM
GPPPPHGPHNHTPPIRHNTTHLHPQHRRLLTQRMQSRGGDRGRTGLDRRSRDPYSNLMSQ
KEKEWVTKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERERDSSSKKEHATKLITPQVAK
VEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRSDDEEKREKQVWNKRRQILYTVEK
MYSLLLEVQDFEKRFVQTPEEEREALLEQHKTNTEQLCSSLQEKEWEDRVSDEQCVMIMS
VRKGKRLIARLLPFLPASQGAAVVMVIARNLPALAKKDKQDQVLCCLVEPVSAVIQSLSS
SALTDLLQELQGGDGQLAGVLQNKVNHQQTVAGWLISQPGRTCVRSPAKEESLLFLMLEM
SFVHLILSRCHTLTLKYAERERQLKKKKKKSDFAKKSELSIKACSVNVANGFLPFVTLRV
SVDMNLSSFRTELVFSVTRELLGVPSSSLSPPLFTPPNLLSLFSRYVDRQRLELLQDKLQ
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggatgacgactgtacattggaggaggaagatgatggactg
attgaggaggaagatgaaatcgaccagtttaatgatgacacctttggagccggggccatc
gatgacgactggcaggaagagcacaaacgcctggcggagctcgatgagcgggacgggtta
ggagtcgggccgggattaggaggaggagaggatgcctcgtcctcactcggtctgccttcg
tcttctgttcagctctcctcgtcttcctctgggctgccaacacaagatgtggacgaacga
tcggggggaagcgacttggccgagtctctggctcggttcattctggacgccgacccggca
atcgctggggtcggggcagcagagaggcccgctccctctcccggctctgcggggtcggtt
ctgtctgccctgcgaggactggatcagtccagagtcctgcagcagccctcctccatggct
ccaaagcaacccccccagcaccagcttccccaaggaggctcaggtgaggggaggtcgcct
gtcttagccttcctcccccctccatgctcagctatcagcagcagcagcacctgctgctcc
gagacattactgtgtctttcgtttggtgatttcgtcatcagcctgcggacgataacagat
attaaacctgtggctaaaagtgatgctgagctctcagacagcagctctctgacgcgctgc
aaatgtctgcagctacaggtttccttctgttcgcttcatcttcctcctcctcaggaaggc
tccttgatgtcaataatcaaagaggcggggcttcctaagcgtcctcctcaggggcgggcc
gatgaagggcacgacctgtcagagagggctccgcctcctcgttcctcttctcctgtgatt
ggctctccgccggtgagggcggtgcctattgggaccccacccaagcaccctatgagcctg
aaccatcagatccaccatcccacggcggttcatgtgagagccccgatccagcaccgatac
cccgcccctttccctgagcgcctgtcccccaacacgctcctcaacatagctaactctccg
ttgtgtcgcggtccgtttcctcccagagtcggcccggttctgtctcagctccagcgagcg
cagctgcttaattctcaggtggcaggctttcctcgcggtggccccggtcctcctctgtta
gctggtggaggtttcaggcctttctttggggggcccccgccgcctcacggccacaggatg
ggtcccccgccgcctcacggcccccacaaccacacacctcccatcaggcacaacacgacg
cacctccacccacagcaccgccgcttgctaacgcagcgcatgcagagcagaggaggtgac
cgaggcaggacgggcctggaccggcgcagcagagacccctacagtaacctgatgagtcag
aaggagaaggagtgggtcactaagatccagatgatgcagctgcagagcaccgacccttac
ctggacgactattactaccagaactactatgaaaagatggagaaacgccaggagagggag
cgagacagcagcagcaagaaggaacatgccaccaagctgattactccgcaggtcgccaag
gtggaacacacctacaggccagttcagtttgcaggatctctagggaagcttacagtgtcc
agcgtgaacaacccgcgaaagatgatcgacgctgtggtgacgactcgctccgacgacgag
gagaagagagagaagcaggtttggaacaagaggcgtcagatcctctacaccgtggagaag
atgtacagtttgctactggaggtccaagacttcgagaaacgttttgttcagactccagag
gaggagagggaggccctgctggagcagcataagacaaacacggagcagctgtgcagctcc
ctgcaggagaaggagtgggaagacagagtgagtgatgagcagtgcgtgatgatcatgtca
gtgaggaagggcaagcggctcatcgccaggctcctccccttcctgcccgcatcccagggt
gctgccgttgtcatggtgattgctcgcaacctccctgccttggcgaagaaggacaagcag
gaccaggtgttatgctgcttggtggagccggtctctgcagtcattcagtcgctgtccagc
tccgccctcacagacctgctacaggagcttcaaggtggcgatggtcagctggccggcgtt
ctgcaaaacaaggtaaaccatcagcagactgtagctggttggttgatcagtcagccgggg
agaacgtgtgtgagatcacctgctaaggaggaatcgcttcttttcctgatgctagaaatg
tctttcgtccacctgatcctaagccgttgtcacaccttaacgctgaagtacgctgaacgt
gaacgacaactcaaaaaaaaaaaaaaaaaatcggatttcgcaaaaaaatcggaattgagc
atcaaggcctgcagtgtgaacgtagccaatggtttcctcccattcgtcaccctgcgggtt
tctgttgacatgaatctgtcttctttcaggacagagttggtgttttcagtgacgagggag
ctgctcggcgtcccgtcttcgtccctctcccctcccctcttcactcctcccaacctgctc
tctctgttctcacgctacgtggatcggcagcggctggagctgttacaagacaagctacag
tga
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