Cyprinodon variegatus (sheepshead minnow): 107082707
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Entry
107082707 CDS
T06110
Name
(RefSeq) ATP-binding cassette sub-family A member 1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg02010
ABC transporters
cvg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
107082707
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
107082707
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cvg02000
]
107082707
Transporters [BR:
cvg02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
107082707
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
Motif
Other DBs
NCBI-GeneID:
107082707
NCBI-ProteinID:
XP_015226988
Ensembl:
ENSCVAG00000005271
LinkDB
All DBs
Position
Unknown
AA seq
2288 aa
AA seq
DB search
MSVSTQLGLLLWKNFTYRRRQTLQLLVEIIWPLFIFFILIAVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGILCNANNPCFRHPTPGESPGIVGNFNDSIISRLFSDAKKILLYSQNDK
NLEGFKELAQALEVLQNSRSGFKLKHFLQDNETLSSFLQWNASLSQHSIQEIIEADVNLE
RVLLKGFGVHLKNMCPRNGGTDALGDFVTISDQQVALQVQEFLCRAPPTWLDIAEEHFMS
NLDFFKPIQRDVRSDPEAVQRVAKAANNLLESLGFLAVELAGMKSWVDLRNEIIFLTQNA
TSSPSVLYKAVSRIACGHPEGGGLQIKSLNWYEDSNYKALFGNHNSSEDDNSVFYDNTST
PFCNSLVQKMDSNPMSRMIWQALKPLLLGKILYTPHNPATQRIIHEVNRTFQELGVFRDL
GSMWEEMRPKVWDFMENSQQMDLMRTFLKNNITASVFHARLVDTDWTVADVSNFLSNEPV
AQRGGALTWREVFNETDKAIMSISQFMECVNLDKLEPVSSEEQLINRSMLLLENRKFWAG
IVFPDIAPNATKLPPKVDYKLRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYIWGGFLY
LQDVIEQGIIRAVTGTKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVSII
LKSVVYEKEARLKETMRIMGLNNGILWLSWFISSLVPLLISAGLLVLALKKGNLLPYSDP
GIIFLFLGSYAVVTIMQCFLISTAFARANLAAACGGIIYFTLYLPYVLCVAWQDYIGYGV
KVFASLLSPVVFGFGCEYFALFEEQGVGIQWKNLVSSPLREDEFSLRTTIIMMYFDSFLY
GVLTWYIEAVFPGQYGIPRPWYFPFTKSYWFGEKGSSDKIPLSRKGNAAAVCVEEEPAHL
QPGVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSG
TAYILGKDIRTHLSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEQQVSGEIEHI
LQDTGLPQKRKSRTSTLSGGMQRKLSVALAFVGGAKVVILDEPTAGVDPYARRGIWDLLL
KYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLGTGYYLTLVKRDPE
PSLSSCRNSASTVSFTKKDEESASVSSSDAGLGSEHESEAATIENGPAASICTPPYVPPD
TSFVSSLILRHVPAARLVEDLGHELTYVLPYSAAKDGAFVELFKDLDLKLHELGISSYGV
SDTSLEEIFLKVAEDNGVDTEVPSDGTLPVWRRRRTHAFGGGDNQSCLRPNADDDDDDSE
GDAECRETDWLNGVNGAEGKGSFQVKGWSLKRQQFVALMWKRFLYARRSRKGFFAQIVLP
AVFVCIALVFSFIVPPFGKYPDLELQPWMYEDQVTFISEDAPGDDNMQRLLNSLLDPPGF
GSRCMDSHSIPEAPCTMGDDDWSTPEVPDSVQQLFSSRNWTMKDPSPACCCTHEGRKRML
PECPAGAGGLPPPEMKLSASDSLQNLTGRNISDYLVKTYAQIIGKSLKNKVWVNEFRYGG
FSLGARSTQVLPPANEIDDAINRVRKIFELQKGSAADRFLDNLSGFINGLDTKNNVKIWF
NNKGWHSAAAFINVMSNGILRANLPHGAEPSSYGIIAVNHPLNLTKEQLSQVALVTTSVD
VLVSICVIFAMSFVPASFVVFLIQERVSKAKHMQFISGVHPLLYWVANFTWDMCNYFVPA
TLVILIFICFQQKAYVSSSNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVN
ILIGINGSISTFVMELFGDHEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADALER
FGENRFRSPLEWDMVGKNLFAMAVEGVVFFIITILIQYRFCIKTKPVSKLTKLGTLGEED
EDVARERHRIVQGLGQGDILELRQLTKVYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGK
TTTFKMLTGDTMVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINELLTGREHLELYAV
LRGVPEREVCNVAEWGIRKLSLLKYADKRAGSYSGGNLRKLSTAISLIGAPPVVFLDEPT
TGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLK
NRFGDGYTIILRVAGPDPDLLPVMKFIESELSGSTLKEKHRNMLQYQLPSSLTSLAHVFS
IFAKNKDMLKIEDYSVTQTTLDQVFVNFAKDQSDDYLSKDASVRRKDVVINVTTLSSTCG
AAEGESVM
NT seq
6867 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgtccacacagctgggattgctgctgtggaagaacttcacctacagacgccga
cagacgctccagcttctggtggagatcatctggccactcttcatcttcttcatcctcatt
gcagtgcggctcaactacccaccctacgagcagcatgagtgccactttcccaacaaggcc
atgccttcagccggaaccctgccgtggattcagggcatcctctgcaatgccaacaaccca
tgctttagacacccaacgccgggcgagtctccaggcatcgttggaaacttcaatgactcc
ataatatctcgcttgttttcggatgcaaagaagatcctgctgtacagccagaatgataaa
aacctggagggatttaaagagctggctcaggccctggaagttctgcagaacagccgctca
ggcttcaagttaaagcatttcctgcaagacaatgaaactctgtcaagctttctgcagtgg
aacgcctccttgtcccaacacagcatccaggagatcatagaggcagacgttaacctggag
agggtcctcctcaaaggtttcggggttcacttgaagaacatgtgcccaaggaacggtgga
acagacgccttaggggactttgtgacgatctcagaccagcaggtggcgttgcaggtgcag
gagttcctctgtcgagctccgcccacctggctggacattgctgaggagcactttatgagc
aacctggacttcttcaaacccattcagagggatgtccggtccgaccctgaagcggtccag
cgggtcgctaaagctgccaacaacctactggaaagtctgggttttctggcagtcgagctg
gccggaatgaagagctgggtggacctgaggaatgagatcatcttcctgacgcagaacgcc
acgtcatcccccagcgtcttgtacaaggcggtctccaggatcgcgtgtggtcaccccgag
ggtggcggactgcagatcaagtctctgaactggtatgaagacagcaactacaaggctctg
tttgggaaccacaacagcagtgaggacgacaactcggtgttctacgacaacacctccact
ccattctgtaacagcctggtgcagaagatggactccaacccaatgtcccggatgatctgg
caggccctaaagcctctgctgctggggaagatcctgtataccccccacaaccctgccact
cagaggatcattcatgaggtgaaccggaccttccaggagctaggtgtgttcagggacctg
ggcagcatgtgggaagagatgagacccaaagtctgggacttcatggaaaacagccagcag
atggatctgatgaggacttttctgaagaacaacatcacagcaagcgtcttccacgctcgg
cttgttgacactgattggactgtggctgatgtctccaacttcttgtccaatgagccagtg
gctcagcgtggcggcgccctcacctggagggaggtgttcaatgagacagacaaggccatc
atgagtatatcgcaattcatggagtgtgtgaacctggacaagctagagcccgtctctagc
gaggagcaactcatcaaccgctccatgctgctactagagaacaggaagttctgggctggg
atagtttttcccgacatcgctccaaacgccaccaagctcccacctaaagtggactacaag
ctccgcatggacattgacaacgtggagcggaccaacaagatcaaagatgcgtactgggac
cctggtcctcgggctgacccatttgaggacatgcggtacatctggggtgggttcttgtac
ctgcaggacgtcattgagcagggtatcatcagagcagtgacgggcaccaaggaaaaaacc
ggagtatacatccagcagatgccatatccatgttacgtggatgacatcttcctgcgggtg
atgagccgctccatgccactctttatgaccctggcctggatgtactctgtgtccatcatc
ctaaagagcgtggtttatgaaaaggaggcccggctgaaggagaccatgagaattatgggc
ctgaataatggcattctgtggttgagctggttcatcagcagcctggtgcctctgctgatc
agtgctggactgctagtcctcgccctgaagaaggggaacctgctgccttacagcgaccct
ggcatcatattcctcttcctgggatcttacgccgttgtcaccatcatgcagtgtttcctc
atcagcacagcgtttgctcgcgctaacctggccgctgcctgcggagggatcatctacttc
accctttatctgccctacgtcctctgtgtcgcctggcaggactacatcggatatggagtc
aaagtgtttgctagcctgctgtccccagtggtgtttgggtttggctgcgagtactttgct
ctgtttgaggagcagggggttgggatccagtggaagaacctggtatccagtcctcttcgg
gaagacgagttcagccttcgcaccaccatcattatgatgtactttgattccttcctgtat
ggagtcctcacctggtacatagaagccgtctttccaggtcagtatgggatccctcggccg
tggtacttccccttcaccaagtcctactggtttggagagaaaggaagttccgacaagatt
cccctgagtagaaaaggaaacgctgcagcagtgtgtgtagaggaggagccagctcacttg
cagcccggtgtctacatcgagaacctggtgaaggtttaccgtcacggtaagaaactagca
gtggatggactgactctgggattctacgagggacagatcacttccttcctgggacacaat
ggagctggaaaaacgaccacaatgtccatcctaactggcttattcccacctacttctgga
accgcctacatcctgggtaaagacattcggacacatctaagcgccatcagacagagcctc
ggtgtctgtcctcagcataacgtcctatttagcatgctgacagtggaggagcacatctgg
ttctatgctagactcaaaggcctgtcagagcagcaggtgtcaggtgagatcgagcacatc
ctgcaggacacggggctgcctcaaaaacgaaagtccaggaccagcactctgtccggcggg
atgcagaggaaactgtcagtggccttggcctttgttgggggagccaaggtggtgatcctg
gatgagcccacagctggagtcgacccatatgcccgcagaggaatctgggacctactgctg
aagtatcgacagggtcggaccattatcctttccacccaccacatggatgaggcggacatt
ctgggagaccgcattgccatcatctctcacggcaaactgtgttgtgtgggctcatctctg
tacctgaagaaccagcttgggacaggctactatctgactctggttaagagggaccctgaa
ccctccctgagctcctgcaggaactcagcaagcactgtgtccttcaccaagaaggatgag
gagagcgcctcggtcagcagcagtgacgccggactgggcagcgaacatgaaagtgaggca
gccaccatcgagaatggccccgctgcctccatctgcacacccccttacgtcccgccggac
acatcctttgtttctagcctcatcctgcgacacgtcccagccgcccgcctggtggaggat
ttgggacatgagctaacctatgtgctgccgtacagcgctgccaaggatggtgcctttgtg
gagctcttcaaagatctggacctgaaactccatgaacttgggatctccagctatggagtg
tctgacacaagcctggaggagattttcctaaaagtggctgaagataatggagtggacact
gaagtgccctcagatgggacccttcctgtttggaggcggaggaggactcacgcatttgga
ggaggagacaatcagagctgcctgaggccaaacgcagatgacgacgatgacgactctgag
ggagacgctgaatgcagggagacggactggctgaatggcgtgaatggtgcagaggggaag
ggctcattccaggtgaagggctggagcctgaagaggcagcagtttgtggcgctcatgtgg
aagcgtttcctgtatgcgcggcgctccagaaagggcttcttcgcccagatcgttcttcca
gctgtgttcgtctgcatcgctctggtcttcagcttcattgtgcctccatttggaaagtat
cctgatctggagctgcagccttggatgtatgaagaccaggtcacctttatcagtgaggat
gctccaggtgatgacaacatgcagaggttactgaactcactgctggatcctccgggcttt
ggcagtcgctgcatggacagccattcaatcccggaggccccctgcaccatgggggacgat
gactggagcactcctgaggttcctgatagtgtccagcagctgttcagctccagaaactgg
accatgaaggatccatctccagcctgctgctgcacgcatgaaggcaggaagcggatgctg
cctgaatgcccagcaggtgctggtggtctgcccccgcctgagatgaaactgagcgcctca
gactccctccagaacctgacaggaaggaacatctccgactacctggtgaagacatacgct
cagatcattgggaagagcctaaagaacaaagtctgggtgaacgaattcaggtatggaggt
ttctccttgggggccaggagtacgcaggttctcccaccagccaatgagattgatgatgcc
atcaacagagtgcgaaagatctttgaattacagaagggatctgctgcggaccgattcctc
gacaatctgtctggcttcatcaacggtctcgacacaaagaacaatgtgaagatctggttc
aataacaaaggctggcatagtgctgcggccttcatcaacgtgatgagtaatggcatccta
agagcaaacctaccgcacggcgcagagcctagcagctatggcatcatcgctgttaatcac
ccgctgaacctgacgaaggagcagctgtcccaggtggccctggtaacgacctccgtggac
gtcctggtgtccatctgcgtgatcttcgctatgtccttcgtccctgccagctttgtggtc
ttcctcatccaggagcgtgtcagtaaagccaaacacatgcagttcatcagcggcgttcac
ccgctgctctattgggtggccaacttcacctgggacatgtgtaactactttgtccccgca
acactcgtcatcctcatcttcatctgcttccaacaaaaagcctacgtctcctccagcaac
ctgccggttcttgccctgctgctgctgctatacggctggtccatcaccccgctcatgtac
ccggcctccttcttcttcaagatccccagcaccgcctacgtcgtcctcaccagcgtcaac
atcctcatcggcatcaacggcagcatctccacctttgtcatggaactctttggtgaccat
gagattggaggcatcaacgacatcctaaagaacgtcctcctcatcttccctcacttctgt
ctcgggcgaggactcattgatatggtgaagaaccaggcgatggccgacgccctcgagaga
tttggtgagaaccgattccgatcaccactggagtgggacatggtaggaaagaatctgttt
gctatggctgtggagggagtggtcttcttcatcatcaccatcctcatccagtacaggttc
tgcatcaagaccaagcccgtcagtaagctcactaaactgggaacactgggagaggaggac
gaggacgtggcgcgggagagacaccggatcgtacagggcctcgggcagggagacattctg
gagctccggcagctcacaaaggtatataagaggaagcagaagccagctgtggatcgactg
tgtgtcgggattcctcctggagaatgttttgggctgctcggtgtgaacggagccgggaaa
acgacaaccttcaagatgctgacaggagacaccatggtgacgagcggagaggccttcctg
gctgggaagagcatcctcagggagatcgatgaggtccatcagaacatgggctactgtcct
cagttcgacgccatcaatgagctgctgactggaagagaacatctggagctgtatgctgtc
ctcaggggcgtccctgagagggaagtctgcaatgtggcagagtgggggatcaggaagctc
agcctcctgaagtatgcagacaaaagagctggaagttacagtggaggaaacctgaggaag
ctgtccaccgctatctctctgattggagcacctcctgttgttttcctggacgagcccacc
actggaatggaccccaaggcccgccgggccctctggaactgcatccacagcgtcatcaag
gagggacgctccgtcgtcctcacctcacacagtatggaggagtgtgaggctctttgcacc
aggatggccatcatggtgaatggcaggttcagatgtcttggcagcgtccaacacttgaag
aacaggtttggtgatgggtacaccatcatcctgcgggtggcagggcccgacccagacctg
ctgcccgtcatgaagttcatcgagagcgagctgagcggcagcacgctgaaggagaaacac
cgcaacatgctgcagtaccagctaccatcttcgctcacatcactagcccacgtcttctcc
atcttcgccaagaacaaagacatgctaaagatcgaggattattccgtcacccaaaccaca
ttagaccaggtgtttgtgaacttcgcaaaggatcagagcgacgactacctgtccaaagat
gcgtcagtgaggcggaaagacgtggtcatcaatgttacgacgctgagctccacctgcggc
gctgctgagggagagagcgtcatgtga
DBGET
integrated database retrieval system
