Cyprinodon variegatus (sheepshead minnow): 107082940
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Entry
107082940 CDS
T06110
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107082940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvg03021
]
107082940
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107082940
Transcription machinery [BR:
cvg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107082940
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107082940
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
SHOCT
Motif
Other DBs
NCBI-GeneID:
107082940
NCBI-ProteinID:
XP_015227324
LinkDB
All DBs
Position
Unknown
AA seq
1263 aa
AA seq
DB search
MDCVLLRGDGFNPAAIGLSGPLSWKMEEKAAREDACREYQSSLEDLTFNSKPHINMLTIL
AEENIQFAKDIVAIIEAQISKAPTAEKLPVLYLVDSIVKNVGGEYLAVFAKNLIASFICV
FEKVDENTRKSLFKLRSTWDEVFPLKKLYALDVRVNSLDPAWPIKPLPPNINSSIHVNPR
FLKQSEEKVSPQPAPSKPVALPVAPQASPAAPPSSLTQEQLIRQQLLAKQKQLLELQQKK
IELELEQTKAQLGGLALPPSSTVAPQPESSSTQRPANPIRPWIPPQPQPDPKASSRDPRL
NRGGPPAGPTLKEQPPTKRESPHPPGGPGAAMARRPPEKSPRPEKARPPRKETPEDKLKP
KSPSPLAKGPQGRIRPAEPEGPKKDPRTKKRVLEKSAEPRDDEKKRCSDKKEREEVPRRP
EPPRSKMPNLVNGLGAKTDQAEPGDKADPKPGGAARRKRTRSRSRSPTTSPKRKERRSPK
SHGRSSSPSPPHKPGKPRRPRGDDPQNGKPGRDDRPGPKKTQSDGRRTKRPLDERHSESR
DPHRGHDGAGKDPKDAPHRWRSGWEENKHMKLPEDSHNKPTPPRHKPHGTPTRPSTPRNQ
KIRLSVDANLQIPEVLNSASKKDLLRRASKRLERGEISREDFLNMVHQINHFFQYQEEKQ
QSSGNWDDTRRFSAKKQSLLSATCPQEAMDPAQLSYFEHKSKLRKTQVNHRATGDEGQEA
SEEGEKLVSRSGGPYGRPSQDQAGERDEPQPPLAPMVEEYNHGKEFPKLKSLPGLRFRRR
ADPAESSEREWTSPLTERQLYDEREEHKSSYDAPRRFGPADPRRQDGPLPSVGAHRNSLG
PAGPDAPPPRFERSRLSPLHQKDAADLSPVPCFESPNSEHSDEGPLEAPPPPPQGSKPNM
KGLPRGGPLSVRQHSDSPGHTPPHEGHPPSMYGGPGHMGPSRPHRHGWSRFEDPQFDGPH
HPGPGRFEGGGPAHHNLPERTEGPPPCEGPRIAMRGEGLGAFDGPPQGPSRFGGPMGQQQ
FEGPMGGPGPSEGPMQHFEGPSHFGNMGPGPMGFQQQLPPRFEVPNNQMGPMRFEVPAPG
PRFDLPGGPHQVGPQQPGPPRYDYPPGQQGPPRFPPQHNLQLPMQPMAPPIYDGPAPPQQ
NFGMGPQRFQEPMNPQFPPGQNLLPAGNFNMQPTPFNQPGPGPFYNPPAPVAPMQQPVNM
MGNVNQPYLPQNPVPFGPQTPQVAPPENHFGQVDVNDLLSKLIFNGIIKPPSQTDSSQTA
SGE
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggactgtgtgttgctacgtggcgatggtttcaatccggctgctataggtttgtccggg
cctctgagctggaagatggaggagaaggcggcccgagaagacgcctgcagggagtaccag
tcctctctggaagacctgacgttcaacagcaaaccgcacatcaacatgctcaccatcctg
gccgaagagaacatccagttcgccaaggatatcgtggctattattgaagctcaaatcagc
aaggcgccgaccgcagagaagcttcctgttttgtacttagtggattccatagtgaagaat
gttggaggagaatacctcgcagtgtttgctaaaaacctaatcgcttcatttatttgtgtc
tttgaaaaggtggatgaaaacactagaaagagtctgttcaagctgcgctccacctgggat
gaagtcttcccgctcaagaagctgtatgcgctggacgtcagggtcaactcgctggacccg
gcgtggcccatcaagccgctgccgccaaacatcaactccagcatccacgtcaaccccagg
ttcctgaagcagtctgaggagaaggtgtctccacaaccggccccctccaagcctgtagct
ttacccgtggccccccaggcgagcccagcggcgccgccgtccagcctgacccaggagcag
ctgatccgccagcagcttctggccaaacagaagcagctgctggagctgcagcagaagaag
atcgagctggagctggagcagaccaaagcgcagctgggaggactggctctgccgccgtcg
tctacagtggccccccaaccagagtccagcagcactcagagacccgccaaccccattcga
ccctggatccccccccagcctcaacctgaccccaaggcgtccagtagagacccccgtctg
aaccgtggcgggcccccagctgggcccacactcaaagaacaaccccccaccaagagggag
agcccccaccctccaggggggcccggcgccgccatggcgaggaggccgccagagaaatcc
ccccggcctgagaaagcccggccccccaggaaggagacaccagaagacaagttaaagccc
aaatctccgtcccctctggccaaagggccccagggccgcatcaggccggcagagcctgag
ggccccaagaaggaccccaggaccaagaaacgagtactggagaagagcgctgagccccgg
gacgacgagaagaagcgctgcagcgacaagaaggagcgggaggaggtgccaaggagacca
gagccccctaggtccaaaatgcccaatctggtcaacggcctgggggccaaaactgaccaa
gcagagcccggagacaaggctgacccgaagcccggaggcgccgctcgcaggaaacgcacc
cgctcacggtcccgctcccccaccacctcccctaagaggaaggaacgccgttcccccaaa
agccacggccgcagcagctccccatcacccccccacaaacccgggaaaccccggaggccc
cgaggagacgacccacagaacggaaagccgggccgagacgaccgacccggccccaagaag
acccagtcagatggcaggagaaccaaaaggccgctggacgagcggcactctgagtccagg
gacccccacaggggccatgatggtgctgggaaggaccccaaggatgcgccacaccgttgg
aggagcggctgggaggagaacaaacacatgaagcttccagaggactcccacaacaagccc
accccccccagacacaagccacatggcaccccgacccgccccagcacacccaggaaccag
aagatccggctcagcgtggacgctaacctgcagatccccgaggttctgaactccgcctcc
aagaaggaccttctgaggcgggccagcaaacgtctggaaaggggggaaatttctcgggag
gacttcctgaacatggtgcaccagatcaaccatttcttccagtaccaggaggagaagcag
cagagctccgggaactgggacgacaccagaaggttctccgcaaagaagcaatctctgctg
agcgcgacctgtcctcaggaagccatggaccccgcccagctgtcgtactttgagcacaag
tccaagctgaggaagacgcaggtcaaccacagggcgacgggtgacgaaggccaggaggcg
tcagaggagggcgagaagctggtgtcgaggagtggggggccctacggtcgaccatcgcag
gaccaagcaggtgagcgagacgagccgcagccgccactcgcccccatggtggaggagtac
aaccacggcaaggagttccccaaactcaagtctctgccaggactccgcttcaggaggaga
gccgaccccgcagagtccagtgagcgggagtggacgtcgccgctgacggagcgccagctt
tatgacgagcgggaggagcacaagagtagctacgatgccccgcggaggttcgggccggcc
gacccacgccggcaggatgggccccttccctctgtaggggcccaccgcaactccctgggc
cctgctgggccggatgctccgccccctcgctttgaacgctcccgtctgtctcctctgcat
cagaaagatgcggctgacctgagcccggtcccttgctttgaaagtccaaacagcgagcac
tcagatgaggggcccctggaggccccccctcctcctcctcagggctccaaaccaaacatg
aaggggctcccccgtggggggcctctgtctgttcggcagcacagtgactccccaggacac
acacccccacacgaaggacaccctccttctatgtatgggggccccgggcacatgggcccc
tccagaccacaccgccatggctggagccggttcgaggatccccagtttgatggcccccac
cacccggggcccggcaggttcgaaggtggggggccagcacatcataacctgccagagaga
actgagggccccccgccctgtgaggggccccgcatagcaatgagaggagaagggttgggg
gcctttgacgggcccccacaggggcccagcaggtttggtggtcccatgggacaacagcag
tttgaagggcccatggggggccctggtccgtcggagggccccatgcagcattttgagggg
cccagccacttcggcaacatggggcctggtccaatgggcttccagcagcagctgcccccc
cgctttgaggttcccaacaatcagatgggtccaatgaggttcgaggtccccgcaccgggc
cccaggtttgacctgccaggggggccccatcaagtgggcccccaacagccgggacctcct
cgctacgattaccctcctggccagcaaggtccccctaggttccccccccaacacaacctc
cagctccctatgcagcccatggccccccccatctacgatggccccgccccaccgcagcag
aactttggtatgggcccccagcggttccaggagcccatgaaccctcagttcccaccgggg
cagaacctgctgccggcgggaaacttcaacatgcagccaacgccgttcaaccaaccgggc
cccgggcccttctacaacccgccggcacctgttgcccccatgcagcagccggtgaacatg
atggggaacgtgaaccagccctacctgcctcagaacccggtgcctttcggaccacagact
cctcaggtggctcctccagagaaccacttcggtcaggtagatgtcaacgaccttctgtcc
aaactcatcttcaacggcatcatcaagccgccatcgcagaccgactcgtcacagacggcc
agcggtgagtga
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