Cyprinodon variegatus (sheepshead minnow): 107083041
Help
Entry
107083041 CDS
T06110
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107083041 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107083041 (xab2)
03041 Spliceosome [BR:
cvg03041
]
107083041 (xab2)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107083041 (xab2)
Spliceosome [BR:
cvg03041
]
Complex B
Other components
Prp19-related factors
107083041 (xab2)
Complex C
107083041 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_15
ARM_TT21_C
ARM_TT21
TPR_16
SNAP
TPR_MalT
NRDE-2
TPR_1
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
107083041
NCBI-ProteinID:
XP_015227467
Ensembl:
ENSCVAG00000012648
UniProt:
A0A3Q2CX52
LinkDB
All DBs
Position
Unknown
AA seq
849 aa
AA seq
DB search
MPSLNGKADVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGPKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITDPVYEEINNCHERALVFMHKMPRIWIDYCQFVVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFARNLPLPETALRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAMRLAAIVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGKEEEDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEFGEMELRHENYDQALRILRKATAIPSKKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIVINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETDERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCMRFADMECKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKASTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEINIDEDDDEDDEDQGPDEVQLEQKSVPT
AVFGGLKED
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccttccttaaatggaaaagctgacgttatatttgaggatgatgatcttccatatgaa
gaggagattatcaggaatccatactctgtcaaatgttggatgcgctacattgaattcaaa
cagaatggacccaaatccaccctgaacatgatatatgagcgggctctgaaagaattgcct
ggaagttataaattgtggtacaactatctgagagaaaggaggaaacaagtcaaagggaaa
tgcatcacagatccagtttatgaggagattaataactgtcacgaaagagcactcgtgttt
atgcacaagatgcccaggatttggattgactactgtcagtttgttgtgtcgcaatgtaag
atcacaagaagtcggaggacatttgaccgggctctgagagctttacctgtaacccagcat
ccacgaatctggcctttgtatctacgctttgctcgtaaccttcccctgcctgagacagcc
ctgagggtgtatcgaaggtatctcaagctatctccagagaatgcagaagagtacatagac
tacttgcggtctgttggtcgtttggacgaagcagctatgcgattagcagcaattgtaaat
gatgaaagctttgtgtccaaagagggcaaatctaactatcagctgtggcacgaactatgt
gatctgatctctcagaaccccgataaagtgacatctttgaatgtcggggccatcatacga
ggaggcctcacacgctttacagaccaacttggaaaactttggtgttctttggctgactat
tacatcaggagtggccactttgaaaaagcaagggacgtttatgaggaagccatccttaca
gtggtaacagtgagggatttcacacaagtatttgatagctatgctcagtttgaagagagc
atgattgcggcaaagatggagaccactgctgagatgggaaaagaggaagaagatgacata
gatctggagcttcgcctggctcgctttgagcagctgattgcacggcggccacttctactt
aacagtgtactactgaggcagaacccccataatgttcatgagtggcacaaacgggtaaaa
ctctatgaaggaaatccgcgacagatcatcaacacgtacactgaagcagttcagactgtg
gatccaatgaaggccacaggcaagcctcattctctctgggtttcttttgccaaattctat
gaggagaatgaacagctggatgatgccaggacaatctttgagaaggcaactaaagtgaac
tacaaacaggtggatgaccttgctgcagtttggtgtgaatttggagagatggagcttcgc
catgagaattatgatcaggcactgcgaatattgaggaaagctacagcaatcccatcaaag
aaagcagagtactttgattcgtctgagccggtccaaaacagagtctacaagtccctgaag
gtgtggtcgatgctggcagaccttgaggagagtcttggtactttccagtctacaaaagcg
gtgtatgaccggattatagatctacgcattgccactcctcaaattgtcatcaattatgcc
atgttcctagaagaacacaactactttgaggaaagctttaaagcatatgagcgagggatt
gccctcttcaagtggccaaacgtttatgacatctggaacacttacctcaccaagttcatt
gatcgttatggtggcaaaaaactggagcgagccagagatttatttgagcaagctttggat
ggctgccctgcaaagtttgcaaagactatttatctgctgtatgccaaactggaagaggaa
tatggactggcgcgacatgccatggcggtctatgaaagagcaacacaggcagtggaaact
gatgagagacaccatatgtttaatatctacatcaagagagcggcggaaatttatggagtg
acttacaccagagctatctaccagaaggctattgaggttcttcctgatgagcatgccagg
gacatgtgtatgagatttgcggacatggagtgtaaactaggtgagattgaccgtgccaga
gcgatctactcttactgctctcagatctgcgacccaagggtgacagcgaatttctggcag
acctggaaggaatttgagatccgacatggaaatgaggatacaattagggagatgttaaga
attaaacgcagtgtccaggctacatacaacactcaggtcaactttatgtcctctcaaatg
ttgaaggcttcaacaagttccacaggcactgtttcagatcttgctcctggtcagatggga
attgatgatatgaaaatgttggagcaaaaagctcagcaacttgctgcagaggctgagcag
gacaaacccaaaccaaaagagaaaattcttttcgtcaggagtgacacgtcacgaagtgag
ttggctgagctttccaaacaagccaatcctgatgagattaacatcgatgaggatgatgat
gaagatgatgaagaccaaggaccggacgaagtgcagcttgagcagaagagtgttccaacc
gcagtttttggaggtcttaaagaggactga
DBGET
integrated database retrieval system
