Cyprinodon variegatus (sheepshead minnow): 107083066
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Entry
107083066 CDS
T06110
Name
(RefSeq) retinitis pigmentosa 1-like 1 protein
KO
K19538
retinitis pigmentosa 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cvg03037
]
107083066
04812 Cytoskeleton proteins [BR:
cvg04812
]
107083066
Cilium and associated proteins [BR:
cvg03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
107083066
Cytoskeleton proteins [BR:
cvg04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule-associated proteins (MAPs)
107083066
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DCX
Motif
Other DBs
NCBI-GeneID:
107083066
NCBI-ProteinID:
XP_015227499
LinkDB
All DBs
Position
Unknown
AA seq
2124 aa
AA seq
DB search
MSCHKHNFHCFTAVGGEDSHKSSVPFEHHTPWLPRIPQHGMVAYQELEHGCCLCSAYQQA
QTLEAVENQLLPFYHPYHNHPPHQYVLRGPSMHERTHSAKESNIHHRIHDKKIVLVKNSD
PSFRKTISLHSKGLHSFGLFLKEVSELMEYHVRKLYTQEGFKIDSIQSLLQCPGVLVCVG
REPSHPMIMENFEKTSSNKLPRLSGKSRTTEPTDGDERITAKTNITLPNLEDVNRGTKYS
VSSDKSAPDGRDSPEIVNSCPASGDSREDDIEKWVRVNKDGSLSMEMKVRFRLPNDKILH
WSTKVKKTAGQNNDQIKGHNNPNLAHIGDVSCSESEITSTDEAFFTQHVLGHREKPHCPY
CCSHCQGYETWKNVIGKHGASRCSHSSSSSASSHTVVSRKTVIKRQTMSRSSEEHADQLA
PPVRHESEEDVEQQAEDDLEPRTQSLLSALSSESADLKGITQETSEEEDNQNTGEEIESN
SSKKTNVTNVSTAITVSENTGKSSRTNASRGQVAGDEGICPNRHPVVCHTDSAESDLSQT
LSGSEIMKEICENSSPGESRSHGSKRKANSAMDATEAVSNKSNKGSKDRKNDMDNGDFEL
VPSILPNASPTEVVNEWLKTLPTDRDHYEMEELHENDDSVKDIGAAERDNGEDDAEKNKS
DAQILKEANCPIEFQKEDCKTSTEAPKEESSSTHRGDGSKMFNSIQVMKVLLNPKLDRCN
SLPEISPVHGRKLSTSAKGLLDCLVKLRLIQHDPENANEKDERYQELMSILQSLWLSNPD
EKKHAPNMNNHNSLEGEHNHTSSSGVDVNSGSTGSGKSSDGVKSCSEPNVDGSQTQNSLI
TMEKAHTETSTKWKQDAEKAEQEEEDSATDETITSNDSPGEPPETPASSSKSSGESSGND
KNLSRKLSQDPDPVWVLTLLNKIEKQFMTHYLSAMKELKLRWSLEDTDQLDKMIDELKIE
VQNKIQTSIDKEIRKIQGRVGLPRPPTEAISRVSTKQTEERRQRLKIKLQSTDSQAEKSD
STTGTSYSDQRADNIDEYCPCETCMEKNVNSRQPLSVEVKRTAPVAIDYDLKRILLMKTT
ADGADPHVNDKDTKVKTLVEQVIVGAIREVESEKSVAFSNTEVLNEEESEQEERYVLVKE
ASSEKLEADREGAKKDWSKLKRKLLPSVRIVLQGKMKQQSTTDAANNEKVTINESDQSEE
EDSEAKMTAEQETKVLIKNRSSEEADHGEAVDKHPAFEVSVAQMTDVKSNKEKEVEIDKE
SLSEITSNAALSEDEKAAIETSSITTSGHECEKDKTVVTLTEQKSDTEEASEGTGTTSDH
DSVGESGGTSDGNETEDEEEATFDDLSSIQEEEETEDELSVKREAELKKSQIPAALYENR
KEKGEAKPEVQTSEREEVKEKSIVSGEHTISPVNSGDSPDENEAAESESDEEDTTENEVP
AAQVYRGSLTKSGDKTKETKRAASKHKSEKGAEGEEGTGTDEENLPAVSANESDGNRDSS
TEDETSEEQNKGTTTGDENISEEETALRQNGKSKDQIAKDETAAEGTENEVSEDERTIDD
GEQTGTAGESDSAEDVNDITTDDDDDDDDDESAEENDGICGELSIKQPENENKKYKQAGD
EATVTATSEQQSEKIDNAEEEEAFSCEEESFKVKNRLALALTSETANDSEENKIDTDATH
ESDKDAVGGATGKQESETEDEPNKEKEDRLKEENTMDGTDTEEEDTGQSKSDSADALSND
ETSATETKHKINKAYNALNEKEPEKRRDGDNHDVSGDTDQGSTTESSSKAVTENESEEEG
SISATDDENSDNNLGEDTDETAGQEDTSTVKGYDDLGDKNLEAKCNDEILDETSQEYTDE
KESLGHVEPVEQLLLAKGLLSSRKMEDSTAENQSIKDDTSNVGTCPEESESFANESESES
KQEHFSEAISKAHEDNKTTVEDSSKIEKFGSKGIETNNGEKSRSKDEEDALDKAYSEEAT
DEEEDGSVEEKEPKCIESEEKKSSTLNRKTDQKSIKDYEKEDEDTDTPHEGWNGSLGDSA
DGEDEAEEDSEPEEDLIDRKKPFVADKLENLDTTKKDAKKTLLDPLEALMKERAESEDGA
YADIEDSETEIHDQGDVPSIESKF
NT seq
6375 nt
NT seq
+upstream
nt +downstream
nt
atgtcctgtcacaagcacaacttccactgcttcactgcagttggaggagaagattcccac
aagtcctctgtgccctttgagcatcacaccccgtggctaccacggattcctcagcatggc
atggtagcctatcaggaattagagcatggatgctgtctttgctctgcatatcaacaggcc
caaactctagaggctgtagagaaccagctgttgcctttctatcacccttatcataatcac
ccgccgcaccagtatgttctacgggggccaagtatgcatgaacggacacactctgccaaa
gaatccaatattcatcatcgaatacatgataaaaagattgtgctggtgaaaaacagcgac
ccttcatttagaaagactatatctctgcactctaagggtctgcatagctttggcctgttc
ttgaaggaggtttctgaactcatggagtatcacgtcaggaaactgtacactcaggagggc
tttaagattgacagcattcaaagccttctgcagtgccctggtgttctggtttgtgtcgga
cgggaaccctctcatcctatgatcatggagaattttgagaaaacatccagcaacaaactt
ccaaggctgagtgggaagtcacgcaccactgaacccactgatggggatgaaagaatcact
gcaaagacaaacatcaccctcccaaacctggaagatgtcaacagaggcacaaagtactct
gtatcatctgacaaatctgcacccgatggaagggactccccagaaattgttaattcctgc
ccagcaagtggcgacagcagagaagatgacatagagaaatgggttcgagttaataaagac
gggagtttgtccatggagatgaaagtgcgcttcagactaccaaatgataaaatattacat
tggtctacaaaagtaaaaaagacagcaggccagaacaatgatcagatcaaaggccacaat
aatcctaatcttgcacatattggtgatgtaagctgttcagaatctgaaatcacgtccacc
gatgaagcttttttcactcagcatgttcttgggcacagagagaaaccacactgtccctac
tgctgcagtcattgtcaaggttatgagacatggaaaaatgtaatagggaaacatggtgca
agtcggtgtagtcatagttctagttcaagtgcatcctcccatactgtggtttcaaggaag
acagtgattaagaggcaaactatgtccagatcaagtgaagagcatgcagatcaattggca
ccacctgtacgacatgagtcagaggaggacgtggaacagcaggctgaggatgatttagag
ccgaggacacagagtttgctgtcagctttatccagcgagtcagctgacttaaaaggaata
acacaagagacatctgaggaggaggacaaccagaacacaggagaagaaatcgagagcaac
tcttctaaaaagaccaatgtaacaaatgtgtccactgccatcactgtttcggagaataca
gggaagagttctagaaccaatgcctcaagagggcaggttgctggagatgaaggcatttgt
ccaaatagacatccagtagtatgccatacagattcagctgaaagtgacctgtcccaaacc
ctgtctggttcagaaattatgaaagaaatttgtgaaaattcgtcccctggagaatccaga
tctcatggttcaaaaaggaaagcaaatagtgcaatggacgccacagaagctgtctctaat
aaaagtaataaaggcagcaaagacaggaaaaatgacatggataatggtgactttgagctg
gttccatccatcttaccaaatgcatcccccaccgaggtggtaaatgaatggctgaaaacc
ctaccaacagacagagaccattatgagatggaggaacttcatgaaaatgacgatagtgta
aaagatattggtgcagctgagagagacaatggagaagatgatgctgagaaaaataagtct
gatgctcaaattttaaaagaagccaattgtcccattgaattccaaaaagaggactgcaaa
acaagcacagaggcaccaaaagaagagagcagttctactcatagaggagacggctcaaaa
atgtttaactccatacaagttatgaaagtacttttaaaccctaagcttgacagatgcaac
agtttaccagaaatctcacctgtgcatgggcgtaagttaagtacatcagctaaaggtctc
ttagattgccttgtaaagctgcgtttaatacaacatgaccctgagaatgcaaatgaaaag
gatgaaagataccaggagcttatgagtattcttcagtctctatggctttccaaccctgat
gaaaagaaacatgccccaaatatgaacaatcataattctcttgagggggagcataatcac
acctcttcctctggtgtggatgtaaacagtggatccaccggttcggggaagagtagtgat
ggagtaaaaagctgtagcgaaccgaatgtcgatggatctcaaactcagaacagtttgatc
acaatggagaaagcacacactgaaacaagtaccaagtggaaacaggatgcagaaaaagca
gagcaggaagaggaggattcagccacagatgaaacaataacaagcaatgatagtccagga
gaacctcctgaaacaccagcatcctcaagcaaaagttctggagagtcaagcggtaatgat
aaaaacctctccaggaaactgtctcaagatccggaccctgtttgggtgctaaccttgcta
aataaaatagaaaagcagtttatgacacattatttaagtgcaatgaaagaattgaaattg
cgatggagcctagaagatactgatcagcttgacaagatgatagatgaacttaaaatagag
gttcaaaataaaattcaaacaagcattgacaaggaaataaggaaaattcaaggcagagta
gggttaccaagacctcctactgaggcgatatccagagtttcaactaaacaaactgaagaa
aggagacagaggcttaagatcaagctacagtctacggattcacaggctgaaaaaagtgat
tccacaacaggaacatcctacagtgaccagcgagcggacaatattgatgaatattgtccc
tgtgaaacttgtatggagaaaaatgtaaattccagacaacctctttcagtggaagtcaag
agaactgcacctgttgctattgactacgacctgaagaggattctgctgatgaaaaccaca
gctgatggggcagatccacatgtaaatgataaggacacaaaagtaaaaacacttgtagag
caagttattgttggagcaatacgagaagtagaatctgaaaaatctgttgctttttcaaac
actgaagtcctaaatgaagaagagtcagaacaagaagaaagatatgttttagtgaaagaa
gcatcatcagagaaattggaagcagaccgtgaaggagcaaagaaggactggtcaaagttg
aagaggaaattgcttccatcagtgcgaatagttcttcagggcaaaatgaagcaacagtca
acaacagatgcagcaaataacgaaaaagttactattaatgaaagtgaccagtcagaagaa
gaagacagtgaagccaaaatgactgctgaacaagaaactaaagtattaattaagaatagg
tcatcagaagaggctgaccacggtgaggctgtggataaacacccagcatttgaggttagt
gtagcacaaatgactgatgtcaagtccaacaaagaaaaggaggttgaaatagacaaggag
agtctctcagagattacatctaatgcggcgttatcagaagatgaaaaagcagccatagaa
acatcctcaataaccacaagtggacatgaatgtgagaaagataagactgtggtaacctta
acagagcagaaatctgacacggaagaagcaagcgagggtactggtaccaccagtgaccat
gactctgtgggggagtcaggtggtaccagtgatggaaatgaaactgaggatgaagaagag
gcaacatttgatgatctgtcaagtatacaggaggaagaagaaactgaggatgagctttcc
gttaaaagagaagcagaattgaaaaaaagccaaatccctgccgcactgtatgagaacaga
aaagagaaaggtgaggcaaaaccagaggttcaaacatctgaaagagaagaggttaaggaa
aagagcattgtcagtggagaacatacaatttctcctgtcaattcaggcgattccccagat
gagaatgaagcagctgagtcagagtctgatgaagaagacacaacagaaaatgaagtgcct
gctgcacaggtttacaggggttctttaactaaaagtggagataaaactaaggaaactaag
agagctgcaagcaaacataaatctgaaaaaggtgcagaaggggaagaaggaacaggcaca
gatgaagagaatcttcctgccgttagtgcaaatgaatcagatggaaacagggattcatca
acagaggatgaaacatcagaagaacagaataaaggaacaaccactggggatgagaatatc
tcagaggaagagacagctcttagacaaaatggaaaatcaaaggatcagattgcaaaagat
gaaactgcagcagaggggacagaaaatgaagttagtgaagacgaaagaacaattgatgac
ggagaacaaactggcactgctggtgaaagtgattctgccgaagacgtaaatgacattacc
acagatgatgatgatgatgacgatgatgatgaaagtgcagaggagaatgatggcatttgt
ggtgaactctcaattaaacagcctgaaaatgaaaacaaaaaatacaagcaggctggggat
gaagcaacagtgactgcaacaagtgaacaacaatctgaaaaaattgacaatgcagaagag
gaagaggctttcagttgtgaagaagagtctttcaaagtaaaaaatagacttgctttggct
cttacaagtgaaacagcaaatgacagtgaagaaaacaagattgatacagatgcgacacat
gaatctgataaggatgcagtgggaggagccacaggtaaacaggaatctgaaacagaagat
gaacctaataaggagaaagaagataggttaaaagaagagaataccatggatggtactgat
actgaggaggaagatacaggtcaaagcaagagtgattctgcagatgccctttcaaatgat
gaaacttcagctacagagacaaaacacaaaatcaacaaagcctataacgctttgaatgaa
aaagagccagaaaaaagaagagatggtgataatcatgatgtttctggagatactgaccaa
ggatctacaactgaaagcagctccaaggctgtgactgaaaatgaatcagaggaggaaggt
agcatatcagccacagatgatgaaaattctgacaacaatttaggagaagatacagatgaa
acagcaggtcaagaagacacatccacagttaaaggttatgatgatttgggagacaagaat
ttagaggccaagtgtaacgatgagattttagatgagacttcacaagaatacactgatgaa
aaagagtctttaggtcatgttgaacctgttgaacaattgttattggccaaaggacttttg
tcatcaagaaaaatggaagacagcactgcggaaaaccaaagcataaaggatgacacatca
aatgttggaacatgtcctgaggaatctgaatcatttgcaaatgaaagtgaatctgagtcc
aagcaggaacatttctcagaggctatctctaaagcacatgaagataataaaaccacagtt
gaagattcaagcaaaattgaaaaatttggcagcaagggcatagaaactaataatggagaa
aaatccagatctaaggatgaagaagatgctttagataaagcttatagtgaagaagctaca
gatgaagaagaagatggatctgtagaagaaaaggaaccaaaatgtattgagtctgaagag
aagaagagcagcacccttaatagaaagactgaccaaaaaagcattaaggattatgaaaag
gaagatgaagatactgacacacctcatgaaggctggaatggaagcttaggagactcagct
gatggcgaagacgaggctgaggaagactcagaacctgaagaagaccttatcgatagaaag
aagccttttgttgcggacaagctggagaacctagacacaactaagaaagatgccaagaaa
actttacttgatccgctagaggctttaatgaaagagagagctgaatcggaggatggtgca
tatgctgatattgaggattctgagactgaaattcacgaccagggtgatgtccctagcatt
gaatcaaagttttga
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integrated database retrieval system
