Cyprinodon variegatus (sheepshead minnow): 107083276
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Entry
107083276 CDS
T06110
Symbol
pdcd6ip
Name
(RefSeq) programmed cell death 6-interacting protein isoform X1
KO
K12200
programmed cell death 6-interacting protein
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03250
Viral life cycle - HIV-1
cvg03272
Virion - Hepatitis viruses
cvg04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
107083276 (pdcd6ip)
03272 Virion - Hepatitis viruses
107083276 (pdcd6ip)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
107083276 (pdcd6ip)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvg04131
]
107083276 (pdcd6ip)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cvg04147
]
107083276 (pdcd6ip)
Membrane trafficking [BR:
cvg04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
107083276 (pdcd6ip)
Exosome [BR:
cvg04147
]
Exosomal proteins
Proteins found in most exosomes
107083276 (pdcd6ip)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRO1
ALIX_LYPXL_bnd
DUF2226
COG3_N
Motif
Other DBs
NCBI-GeneID:
107083276
NCBI-ProteinID:
XP_015227852
Ensembl:
ENSCVAG00000007264
LinkDB
All DBs
Position
Unknown
AA seq
880 aa
AA seq
DB search
MATFISVPLKKSSEVDLVKPLSKFVTASYPSGEEQLEYLRAVEELNKLRKSALGRPLDKH
ESSLEILLRYYDQLCAIEPKFPFSENQLCLTFTWKDAFDKGSLFGGSVKLSLASLGYEKT
CVLFNCAALASQIAVEQNTDNDECLKAAARFYQLASGAFSHIKDTVLSALNREPTMDICP
ETVGTLSTIMLAQAQEVFFLKATSDRMKDAVIAKLANQAADYYGEAFKQCQYKDNLPKYF
YFQEVLPVLAAKHCIMQANAELHQSILAKQKKRFGEEIARLQHAAELVKTVASRYDEYVS
VKELTDKINRALTAAKKDNDFIYHDRVPEVKDLEHIGKAALVKATAITPPLSQKFTDLFE
KMVPMAVQQSMGIYGQRKAETVNRLVGTMREATNLCNGVLASLNLPAALEDLSGDSIPQS
IAEKSRSIVEQGGLQNIEKLIRDLPELLTRNREILDESLKMLDDEETTDNELRSKFNQRW
NRTPSGDLYKPLRAEGNNFRNILDKAVQADQVVRDRYNAQCDMIALLCKPQNELNAAIPS
ANPTKTLQGSEVVNVLRSLLAQLEEVKKERETLEEEIKAVTFDMSTTFLKALAQDGAINE
EQLSLSQLDQSYGSYNQKVSASLSKQEELLGKVQTAHQEFSSLKQSNNEANQREEVLKKL
ASAHDSYVEICNNLREGTKFYNDLTEILLKFQNKCSDIVFARKTERDELLKELQQSIARE
PSAPSFNVPAYQSTPAAPAPAPGPTPAPRTVFAQQPQQVQQQPQQKPQPPSRPPPPSFTP
QAASATPASPAPTGPPPSNPPAVAPPSQAQGPPYPTYQGYQGFYQMSMGYNPYAYGQYNM
PYMPYQPTPGQGGYPGAPPAGQPYPGYPQQPPHQPYYPQQ
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgtttatttcagtcccgttaaaaaagtcatccgaagtggacctggtgaagccg
ctgtcgaagttcgtcacagcctcttatccatctggcgaggagcagttagagtaccttcga
gccgtggaggagttgaacaagcttcgcaagagcgctctgggaaggccgctcgataaacac
gagagctctctggaaatcctactgagatactatgatcagctgtgtgctattgagcccaag
tttcccttctctgaaaaccagctctgcctcaccttcacatggaaggatgcctttgataaa
ggatccctcttcggcggctctgtcaagctctctttggccagtttgggatacgagaagaca
tgcgtgttgttcaactgtgcagctctggccagtcaaattgccgtcgagcagaacactgat
aacgacgagtgtctcaaagctgctgctagattctaccagttggccagtggagcattcagt
cacatcaaggacacagtgctttctgcgttaaacagagagcctaccatggacatctgccct
gaaactgtaggaactctgagcaccatcatgttggcccaagcccaggaggtcttcttcctc
aaagccacctcagaccggatgaaagatgctgtgattgcgaaattggccaatcaggctgca
gattactatggcgaagctttcaagcagtgccagtacaaggacaacctcccaaagtatttt
tattttcaggaagtgctgccagtgctggcggccaagcactgcatcatgcaggccaacgcc
gagctgcatcagagtatccttgccaagcagaagaagcgttttggagaagagattgctcgt
ctgcagcatgcagcagagctggtgaagactgtcgcatctcgctatgatgagtatgttagc
gtgaaggagctgactgacaagatcaaccgagccctcacagcagccaagaaagacaatgac
ttcatctaccatgaccgcgtgcctgaagtcaaagacctggaacacatcggcaaggcagcg
cttgtcaaagccacggctatcacgcctccactcagccagaaattcacagatctatttgag
aagatggttcccatggccgtgcagcagtccatgggcatctacgggcagaggaaggctgag
acggtgaacagactggtgggaacaatgagggaggccaccaacctctgcaacggggtgttg
gcttctctgaacctgcctgctgccctggaggatctgtctggagactctatcccacaatcc
attgctgagaagtccaggtcgatcgtggagcaaggagggctgcagaacatcgagaagctg
atcagagaccttcctgagctgttgactcgtaaccgagagattctggacgagtctctgaaa
atgctggatgatgaagagacaacagacaatgagctgaggagcaagtttaaccagcgctgg
aacagaaccccctctggagatctgtataagccccttcgtgcagagggaaacaacttccgt
aacatcctggacaaggcggtgcaggcggaccaggtggtgagggatcgctacaacgctcag
tgcgacatgatcgccttgctgtgtaaaccccagaacgagctcaatgccgccatcccctcg
gccaaccccaccaagacgctgcaaggcagcgaggtggtgaacgtcctgcgctccctgttg
gcccagctggaagaggtgaagaaagagagagagaccctggaggaggaaatcaaggcggtg
acgttcgatatgtcgaccaccttcctgaaggcgctggcccaggacggagccataaacgaa
gagcagctgtcgctgtcccagctcgaccagtcgtacggcagctacaaccagaaggtgtct
gccagcctctctaaacaggaagagctgctgggaaaagttcagacggcccaccaggagttc
agcagcctgaagcagtccaacaacgaggccaaccagagggaggaggtcctaaagaagctg
gcttctgctcacgacagctacgtcgagatctgcaacaacctgcgcgaagggaccaagttc
tacaacgacttgacggagatcctgcttaagttccaaaacaaatgcagcgacatcgttttt
gctcgcaagacggagcgtgatgaactgctgaaggaactgcagcagagcatcgcccgcgag
cccagtgctccatccttcaatgtccctgcctaccagagcacccccgcagctcccgcccct
gctccgggtccaacccctgctcccagaacagtctttgctcaacaacctcaacaagtccaa
cagcagccccagcagaaacctcagcctccttccagaccacctcctcccagcttcacccct
caggcagcgtctgccacccctgccagcccagcacccactggccctcctcccagtaaccct
cccgctgtggctccgccctctcaggctcagggaccaccttatcccacctaccaaggctac
caaggattctaccagatgtctatgggctacaatccttacgcctacggccagtacaacatg
ccctacatgccctaccagcctacccctgggcagggaggatacccaggagcgcccccagca
ggacagccctaccctggctacccgcagcagcccccccatcaaccctactacccccaacaa
taa
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integrated database retrieval system
