Cyprinodon variegatus (sheepshead minnow): 107083293
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Entry
107083293 CDS
T06110
Symbol
pex1
Name
(RefSeq) peroxisome biogenesis factor 1 isoform X1
KO
K13338
peroxin-1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
107083293 (pex1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvg04131
]
107083293 (pex1)
Membrane trafficking [BR:
cvg04131
]
Autophagy
Pexophagy
Other pexophagy associated proteins
107083293 (pex1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
PEX-2N
PEX-1N
AAA_lid_3
AAA_16
AAA_22
DUF815
AAA_14
nSTAND3
RNA_helicase
AAA_28
ABC_tran
AAA_2
AAA_18
Viral_helicase1
NACHT
AAA_33
AAA_5
NPHP3_N
TIP49
AAA_29
AAA_24
ATP-synt_ab
TsaE
Sigma54_activ_2
AAA_7
RuvB_N
APS_kinase
Motif
Other DBs
NCBI-GeneID:
107083293
NCBI-ProteinID:
XP_015227895
Ensembl:
ENSCVAG00000006823
LinkDB
All DBs
Position
Unknown
AA seq
1235 aa
AA seq
DB search
MFSSQGIQAVRVVFNNAKNCFLHLPLTLISHLSLQENQALELSWGNGPAVFLSWTRNRVS
SDPQDHNVELCWQLGEKLGLKDGEQAFLKACHQVSSLSQVFVEPLSADDWEILELHSSTL
EQQLLDQIRVVFQHAVFPVWVNRQTVIYIRIASVSPFAPFGRLEQFTELMVSPKIRSDIG
NLDDASTRSSLDRPDASQSSASKPISDNIPCSDISQHRGGITDLKSLLRHVIRGSYYQVK
EHPPVPNIPVIFPDSIYRVCGFPPDPLCTINHIANGVIHIFPWSLSLNTTIRGGQSVVTY
GRLFKVLSPKEAKEKSKQGTEKRKNGGGENDRGMNQREEAKGEEATVVRVVCHEAEMLER
GHSKGKIHSGRVWIPQPLACKLNIQPHSSVRIKPVKSVVKVASDIRLQPLTSLLEENDDE
IQTTFLGWLHTKSHEPLACLTPRSGTVLLHGNDAKMDLCLTVLKPEPENDPPDQMFLLAP
TVLQKENIQVSRQTMGQPAPNTSTEAKEMELLSPKLLGGIGDLIKTGFQFISHNLLGSPL
SRELCSFGRGLKGGALLITGAKGSGKSSLSRALCRKAREDLDAHVEVLDCKKLQGKRADT
VRQVLQDVFEQAEWGQPSVVLLDDLDHLTHAPSSAEHEHGPEALLQQHIAQSLYDIVDEA
VLHSSLVCLIITSQSEHSLHPSLTEVQGSHLIQGFLNIQPPDQAQRAEILHHLIQRKPFL
SEESLKDLDLEAVAKRTEGYTAQDLTVLLERAIHANTMQKGPSDQAVCLSWRDFLHALSG
FTPPSLWGVELHTPSGVGLEKVGGLREVRQQLMDTILLPAKYPILFSNLPIRHCSGILLY
GAPGTGKTLLIRAVAKDSGMNFISIKGPELLSKYIGASEQGVRDVFQRAQGAKPCILFFD
EFDSLAPRRGHDSTGVTDRVVNQLLTELDGVEGLQGVYVLAATSRPDLIDPALLRPGRLD
KSLYCPPPDQEARIEILKALSSGLSLAPDVDLEQLAAVTQHFTGADLKALLYNAQLEAVH
SSGVGTSQELTSVSDSDMSLSSMIFPNNTSSSDDSVGEGDQNLVLDQSMSHLEPAELHVE
HEEQHANVWRLYFGSSFESETENSPVSRRDSPYVSGPNSREPVSSLPPAYMSSIQTGYKE
LCSEQLERLQQDIRCIKNSYRKGKQEELVWMRSASSQLGLLLSQAHIKSALAVTRPSLSP
ADWSKYSKLYETFGGLEDKLHPRVPFTPGQHVTLA
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgtttagtagtcagggcattcaggctgtaagagttgtttttaacaacgctaaaaactgc
tttcttcacctgccattgacgttgatatcgcacctttccttacaggagaatcaggccttg
gagctttcctggggcaatgggcctgcagttttcctcagctggacccgaaacagggtgtcc
tccgacccacaggaccacaacgtcgagctgtgctggcaactgggagagaaactgggtctg
aaagacggagaacaagcttttcttaaagcgtgtcatcaagtttcatctttaagtcaggtg
tttgtggagcctttgtcggctgatgactgggagatcttggagctacacagttctacattg
gagcagcagcttctggatcagatccgagtggttttccagcatgccgtgtttcctgtttgg
gtgaataggcaaacagtaatctacattagaatagcttccgtttctccatttgcaccattt
ggacgtttggagcagttcacagaactcatggtatctccgaagatccgatctgatatcggc
aaccttgatgacgccagcacaagatctagccttgatcggccagatgccagccagtcttcc
gcctccaaaccaatatcagataatatcccctgttctgacatcagtcaacatcggggaggc
attactgacctgaagagcttgctccgtcatgttataaggggctcttactatcaagttaaa
gaacatcctcctgtacccaacatccctgtcatttttcccgactccatctacagagtgtgc
ggttttcctccggatcctctttgtactataaatcacattgctaatggagttattcacatt
tttccctggagccttagtctgaacacaacaattagaggagggcaatctgttgtgacgtat
ggtcgtctttttaaagtattatccccgaaggaggcgaaagagaaatcaaagcagggaaca
gagaaaaggaagaatggaggaggggaaaatgatagaggtatgaatcaaagagaggaggca
aaaggggaagaggccactgtggtcagggtggtatgccatgaagctgagatgttggagaga
ggtcacagcaaggggaagatccatagtggaagagtgtggataccacagcctctggcctgc
aagttgaacatccagcctcattcatcagtcagaattaaacccgtgaaatcagtcgtcaaa
gtagcctccgacatccgtctacagcctctaacatctctgcttgaggaaaacgatgatgag
atccagacaacttttctcggctggctgcacacaaagagtcatgaacctttggcgtgtctg
actccgcgctctggcactgtcctcctacacggaaatgatgcaaagatggacttatgtttg
acggtgctgaaaccagaaccagagaacgatcctccagatcagatgtttcttttagcaccc
actgttctccagaaggaaaacatacaggtgagcagacagacgatgggacagcctgctcca
aatactagtactgaagcaaaagagatggagctcctctcacctaaactacttggtgggatt
ggagaccttataaagactggattccagtttatttcccacaacctgctgggtagtcccctc
tcaagggaactttgttcctttgggcggggactcaaaggaggagcactgctcatcactggt
gccaaggggagtgggaagagctctctgtcccgggccctttgcagaaaagccagagaggat
ttggacgcacatgtggaggtgttggactgcaaaaagcttcaaggcaaaagggccgacact
gtgaggcaggtcctgcaggatgtttttgaacaggcagagtggggacaaccctctgtggtc
ctgctggatgacctggatcatttgactcatgcaccatcatcagctgaacatgagcatggg
cctgaggctctcctgcagcaacacattgcacaaagtttgtatgatatagtggatgaggca
gtgctccactccagcctggtatgtctgatcatcaccagccagagcgaacactctctccac
ccttctctcacagaagtccagggatcccatctcatccagggatttttaaacatccagcca
ccagaccaggcccagagagcagagatcctgcatcatttgatccagaggaagcccttcctg
tctgaggagagcttgaaagacctggatctagaggctgttgccaagaggacagagggatac
acggcccaggatctcactgtgctgttggagcgtgcaatccatgctaacacaatgcaaaaa
ggacccagtgatcaagctgtctgtctgtcatggagggatttcctgcatgctctcagtggg
ttcactcctccatcactgtggggcgtggagcttcacactccgagcggtgttggactagag
aaagtgggagggttacgagaagtgcgacagcagcttatggacaccatcctgctccctgct
aagtatcccatcctcttctccaaccttcctatccggcattgctctggaatccttctctat
ggagctccaggtacagggaaaacgcttctgatcagggctgtcgccaaagacagcggtatg
aacttcatcagcattaagggacctgaacttctgagtaaatatatcggagccagtgagcaa
ggagtccgtgacgttttccagagggcacaaggtgccaaaccttgcatccttttctttgat
gagttcgactctttggcaccaagaagaggccatgacagcacgggggtaacagaccgcgtg
gtcaaccagctgcttaccgagctggatggggtggaaggcctgcagggagtgtatgtgctc
gcagccaccagccgtccagatctaatagacccagcactactgagaccaggaagactggac
aagtccctctattgtcctcctccagaccaggaagctcgtattgagatcctaaaggctcta
agttctggcctctctctcgctccggatgttgacctggaacagctggcagcagtgacacag
cacttcactggagcagacctaaaggctctactctacaacgcacaactagaggctgtccac
agctcaggcgtcggcacatcccaggagctgacctcggtctcagacagcgacatgagcctg
tcttccatgatcttcccaaataacaccagcagctcagatgactctgtcggagaaggagac
cagaacctagtgctggaccagtcgatgagtcatctggagcctgcagagctacatgtggaa
catgaagaacagcacgctaacgtctggaggctgtactttggaagctcttttgagtcagag
actgaaaactcaccagtttctagacgggactcaccttacgtctctggacccaactccaga
gagccagtcagcagcctccctccggcttatatgtcatccatccagacgggatacaaagag
ctctgctctgagcagctggagcgcctccaacaggacatcagatgcatcaagaatagctac
aggaaaggaaaacaggaagaattggtctggatgcgttcagcctccagccagctgggcctc
ctgctgtctcaggctcacattaaatctgccctggctgtgactagaccctcactcagccca
gccgactggagcaaatacagtaaactgtatgaaacatttggaggtttagaggacaagctg
catccacgtgtgccgttcacaccaggacaacacgtcactcttgcctga
DBGET
integrated database retrieval system
