Cyprinodon variegatus (sheepshead minnow): 107083481
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Entry
107083481 CDS
T06110
Symbol
trip12
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107083481 (trip12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cvg04121
]
107083481 (trip12)
Enzymes [BR:
cvg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
107083481 (trip12)
Ubiquitin system [BR:
cvg04121
]
Ubiquitin ligases (E3)
HECT type E3
107083481 (trip12)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HECT
WWE
Motif
Other DBs
NCBI-GeneID:
107083481
NCBI-ProteinID:
XP_015228222
Ensembl:
ENSCVAG00000018138
LinkDB
All DBs
Position
Unknown
AA seq
2063 aa
AA seq
DB search
MSNRPNSNPGGSLRRSQRNTAAAQPQDHTVAGRLQSEQVKHKPNSPPESRRPNSKAPKAS
ASSATGQSRGHSSRRSGLTLSVASFVLQDDPEAAGTSEQERPGHQSKSEGTRGLKRSEAL
DQISVLGPTPAKKPKLVPTSKSNTSETKKGPAKSKKRQAASEAPASTGRSQSKKSAASPV
PKRKKSDSFPGLSSTTGSLPNCTEGRTAKPTKLASKSAASAKAGCSNVTDSSSSASSSSS
SSTTGTNSAATQGARLKQGKDQTKARRSRSASSPSPRRSTRDKEQAKTASSSKFEWATRF
NPKVNLPKPKLSLPGTSKTETSKPGPSGLQAKLASLRKSTKKRSESPPAELPSFRRSTRQ
KTTGSCASTSRRGSGLGKRGAADARRQEKMADSDNNQDGANSSAARTDEASQGASASSSV
AGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIGSGASSKAQ
QLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHNFEIMN
HASRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVAEQALTALEMLSRRHSKAILQ
AGGLAACLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVDDSLSLLTQRLTHQDKKSV
ESTCLCFARLVDNFQHEENLLQQVASRDLLTNIQQLLVVTPPVLSSGMFIMVVRMLSLMC
SNCPTLAVQLMKQNIAETLRFLLCGASNGSCQEQIELVPRSPQELYELTSLICELMPCLP
REGIFAVDAMLKKGSAQTTEGAIWQWRDDRGLWHPYNRIDSRIIETAHQNGEDEISLSTL
GRVYTIDFNSMQQINEDTGTARGIQRKPNPLANPNTGSHQEVRREDARAQLMKEDPELAK
CFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFADAELLKDVLRNHAVSSHIASMLS
SQDLKIVVGSLQMAEILMQKLPDVFSVYFRREGVMHQVKNLAESESFLVTSPPKACSSGT
ASLCTTTITSVSTTSANIAAPDLGSPSFQHSMEDSLDLSPQGRLSDVLKRKRLPKRGPRR
PKYSPPRDDDKADNQVFFAAKSPTSTQSPKSSFLASLNPKTWGKLGAQTNNANSEPSRTA
GVSGLARAPPKDSISNNRDKIKAWIKEQASKFVERYFNSENVDGSNPALNVLQRLCTATE
QLNLQADGGLECLVEISNIVSESDVSSFEIQHSGLVKQLLLYLTSNTDRDLLSRDVRLRR
FLNVFAGCPVPGIDPLGRLDPTNSSAYLALVHKMNSCLSQMEQFPVKVHDFPSGNGNGSR
GSQALKFFNTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGYGRIREE
DEDSDDDGSDDEIDESLAAQFLNSGSVRHRLQFYIGDHLLPYNMTVYQAVRQYSLHSEEE
RESTDDEANPLGRAGIWTKTHTIWYKPVREDEEGSKDAVGGKRGRAQTAPTKTSPRNAKK
QDELWHGENQDGVCPSVANPLETYLTTEPPETITFDDPSLDVTLLLRILHSISRFWFYLY
DNAACKEIISTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLIELGKTCPFFFPFDTRQM
LFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTINREDLLKQAESVMQDL
GSSRAMLEIQYENEVGTGLGPTQEFYALVSQELQRADLGLWRGEEITLANPKGNQEGTKY
MFNSRGLFAVPFGRTTKPAHIAKIKMKFRFLGKLMAKAIMDFRLLDLPLGLPFYKWMLRH
ETSISSHDLMNIDPGVAKSIQHLEDIIRQKKRLEQDRSQTREALQQALESLNMNGCSVED
LGLDFTLPGFPNIELKKGGKDVPVTIYNLEEYLRLVVYWTLNEGVSRQFESFREGFESVF
PLHHLQYFYPEELDQLLCGSKSETWDVKTLMECCRPDHGYTHDSRAIRFLFEVLSSFDAE
QQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYS
SIEIMREKLLIAAREGQQSFHLS
NT seq
6192 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaattccaatccaggggggtcactgcgccgttcacagaggaacact
gctgcggcccagccacaagaccacacagtagctggaagattgcagtcagagcaggtaaaa
cataaaccaaattccccacctgaaagtagaagacctaattctaaggctcccaaagcctct
gccagctcagccactggccagtccagagggcacagctcaagaagaagcggtcttacccta
tccgtggcttcgtttgtgttacaagacgacccagaggctgcaggaacatctgaacaggaa
cgaccaggccaccagtcaaagagtgagggcacccgagggcttaaacgaagtgaagctctt
gaccaaattagtgtccttggacccacccctgccaagaagcccaaattggttccaacatcc
aaaagcaatacctcagagaccaagaaaggtccagctaagtccaagaagagacaggctgct
tcagaggctcctgcatcgacaggtcgaagtcagagcaagaagagtgctgcctctccagtt
ccaaaacggaaaaaatctgactctttcccaggtctaagtagcaccactgggtctctaccc
aattgtaccgaaggcagaactgcaaaaccaaccaagctggcgtctaaatcggccgcctca
gccaaagctgggtgtagcaacgtgacagactcgtcctcttctgcctcctcttcctcctct
tcttctaccacaggcaccaacagtgctgctacgcaaggcgctcgtttgaagcagggaaaa
gatcagacaaaggctcgtcgttccagatcagcatccagtccctccccacgccgcagtaca
cgagacaaggagcaggccaaaactgccagctcttcaaaatttgagtgggcaacacgcttt
aaccccaaagttaacttgccaaaacccaaactttccttacctggaacttccaaaactgag
acctccaaacctgggccatctggattacaagctaaactagcaagtttaaggaaatccaca
aagaagcgtagcgagtctcccccagcagagctccccagttttcggcggagcacacgccag
aagaccacgggctcctgcgccagcaccagtcggcggggctcaggcctgggcaagcgcggg
gcagccgacgctcgccgacaagagaaaatggccgattccgacaacaaccaagatggggcc
aattcatcagctgctcgcactgatgaggcatcccaaggagcttcagcttcaagctcagtt
gccggagcagtgggcatgaccacttctggtgagagcgagtctgatgattcagaaatggga
aggcttcaagctctgctggaagccagaggactcccaccacatctttttggccccctggga
ccccgcatgtcgcagctgtttcacaggaccataggcagtggagccagttccaaggcccag
cagctactgcaaggccttcaggccacaggggatgaatctcaacagctccaagctgccatt
gagatgtgccagctgttggtgatgggcaatgaagaaacgcttggtggttttcctgtcaaa
agtgtggtgcctgctctgattacactgttacagatggagcataattttgaaattatgaac
catgcatcacgtgcgctcacttacatgatggaggcgcttccacggtcatctgctgtggtg
gtcgatgctattcccgtcttcctggagaagcttcaggtgatccagttcatagacgtggcg
gagcaggccctcaccgccttggaaatgttgtcaaggcgacacagcaaagcaatcttgcag
gctggcgggctcgctgcctgcctcctctacctggagttcttcagcatcaatgcccagagg
aatgccttggccatagcagcaaactgctgccagagcattaccccagacgagttccacttt
gttgatgattctctctcacttttgactcagagactcacacatcaggataagaagtcagtt
gaaagcacttgtctctgttttgccagactggtagacaacttccagcatgaagagaacctg
ctgcagcaggtggcatcgcgggacctgttgaccaacattcagcagttgctggttgtgacc
cctcctgttctcagctcggggatgttcattatggttgtgcgcatgctttcgctgatgtgc
tccaactgcccgactctggcagtccagcttatgaagcagaacatagcagaaactctgcgt
ttcctcttgtgtggcgcatccaatggaagctgccaggaacaaattgagcttgtacctcga
agccctcaggaactttatgaactgacctccctcatttgtgagctgatgccctgcctcccc
agagagggcatctttgcagttgatgccatgctaaagaaaggcagtgcccaaacgacagag
ggcgcaatctggcagtggagggatgaccggggcttgtggcatccttacaaccgcatcgac
agccgcattattgagacggcccaccagaacggagaagacgaaataagtctgtccacactg
ggccgcgtgtacacaattgacttcaactctatgcagcagatcaatgaagacacaggtaca
gcgcgtggtatccagaggaagcctaaccctcttgccaatcccaacacggggagtcaccaa
gaggtccgtcgagaagacgccagagcccagctgatgaaggaggaccctgagctggctaag
tgctttataaaaacactgtttggggtcttgtatgaggtgtacagctcatcagctggccct
gctgtcagacacaagtgccttagagccatcctcaggatcatctactttgctgacgctgag
ctgctgaaggatgtgctgaggaaccatgctgtgtccagtcatattgcctccatgctgtca
agccaggacctgaagatcgtggttggttctctgcagatggcagagatcctcatgcagaag
ctgcctgatgtcttcagtgtctattttagaagagaaggtgtaatgcaccaagtaaagaac
ctcgccgagtctgagagctttcttgtcaccagtcccccaaaggcctgctctagtggcacc
gccagcctctgcaccacaacaatcactagtgtatccacaacatcagctaacattgcagcc
cctgacctgggctcccccagctttcagcacagcatggaagactccctggacctcagtcca
caggggcggttaagtgatgtcctaaagagaaaacgacttccaaaaagaggaccccgaagg
cccaagtactctccaccaagagatgacgataaagcagacaatcaggtcttctttgcagcc
aagagccccaccagtactcagtcacccaagtcatccttcttggctagcctcaaccctaag
acttgggggaagctgggtgctcaaactaataacgccaactctgagccatcacgcacagca
ggagttagcggactagcaagagcgcctcccaaagactcgatttcaaataacagagacaaa
atcaaagcctggattaaagagcaggcaagtaagtttgtggagcgctacttcaactctgag
aatgtggacggcagcaaccccgctctgaatgttctccagagactttgcacggccaccgag
cagctgaacctgcaggcggatggtggcctggagtgcctggtggagatctccaacattgta
tcagagtctgatgtgtcgtcttttgagatccagcacagcggcctggtgaagcagctgtta
ctctatcttacctccaacacagacagagacctgctcagtcgggacgtgcgactcaggagg
ttcctcaacgtctttgctggttgtccggttcctggcatagatcctttaggtcgtctggat
cccacaaacagctcggcgtacctggctcttgtgcataagatgaacagctgtctgagccag
atggaacagttccccgtcaaggtgcacgactttcccagtggcaacggcaatggcagcaga
gggtctcaggcgctgaagttcttcaacacacatcagctgaagtgtcagctgcaaagacac
ccagactgcaccaatgttaaacagtggaaagggggccctgtgaagattgaccctctggct
ctggtgcaagcaatcgagagatatctagtggttagaggttacggccgaatcagggaagaa
gatgaggacagtgatgatgacggttcggatgatgaaatagatgaatcactggcggcccag
ttcctaaattctggcagcgtgcgtcacagactacagttctacatcggtgaccacctgcta
ccatacaacatgacggtgtaccaggctgtacggcaatacagtcttcattcggaggaagaa
agggagtccacggatgatgaagccaatccacttggcagggctggaatctggaccaaaacg
cacacaatatggtataagcctgtgagagaagacgaagaaggaagtaaggacgcagtaggt
ggaaagagaggccgcgcccagaccgctcccactaaaacctcaccacgcaacgccaagaaa
caggatgagctgtggcatggtgagaatcaagacggagtctgccccagtgtcgccaatcct
ttggaaacatacctcactacagagccaccggagaccataaccttcgatgacccctcttta
gatgtcaccctgctgctgaggatcctacactccatcagtagattctggttctacttatat
gataatgctgcatgtaaggaaattatttcgacctcggagttcattaatagtaaactgact
gccaaagccaatcgtcagctacaagaccccctggtcatcatgactgggaacatccccacc
tggcttatcgagctgggaaagacctgccccttcttcttccccttcgacactcggcagatg
ttattttatgtcactgcctttgatcgagacagagcaatgcaacgcctgctggacacaaac
cccgagatcaaccagtcagattctcaggacagcagagtcgctccacgtctcgataggaaa
aagagaacgataaaccgagaggatctattaaaacaggcagagtctgtgatgcaggacctt
ggcagctccagggcaatgctagagatccagtatgagaacgaggtgggcacaggtctcggc
ccgacccaggagttctacgctctggtttctcaggagcttcagagagcagatcttggtctt
tggagaggcgaagagattactctggccaatcctaaaggaaaccaagagggcaccaagtac
atgttcaactccagaggactgtttgctgttccctttggcaggacgacaaaaccagcacac
atagccaaaattaaaatgaagttccgcttcctaggaaagttgatggctaaagccatcatg
gactttagattgctggatctgccattggggcttccgttttataagtggatgctgcgacat
gagacgtctataagctctcacgacttgatgaacattgatccaggcgtggccaagtccatc
cagcacctggaggatatcattcgccagaagaagaggttggaacaggacagatcacagacc
agagaagccctccagcaggccctagagagcctgaacatgaacggctgctcagtggaggac
ctgggcttggacttcactctgccagggttcccaaacattgagctgaaaaagggcggaaaa
gacgtgccagttacaatctacaaccttgaggagtacctcaggttggtggtttactggacc
ttaaatgaaggagtatcaaggcaatttgagtcattcagggaagggtttgagtcagtcttc
cctttgcatcaccttcagtatttctatccagaagagctcgaccagttgctttgtggcagt
aaatcagagacatgggatgtcaagacgctgatggagtgctgccggccagaccacggctac
acacacgacagccgggccatccgcttcctgttcgaggtgttgagcagctttgatgctgaa
cagcagagactcttcctccagtttgtaacaggaagcccaaggctgccagtcggaggtttc
cggagcctgaacccccctctgacaattgtgaggaagacgttcgagtcgacagagaacccg
gacgacttcctcccctcagtcatgacctgcgtcaactacctgaagctgcctgactactcc
agcatagagatcatgcgagaaaaactgttgatcgctgcccgcgagggccagcagtcgttc
cacctctcctga
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integrated database retrieval system
