Cyprinodon variegatus (sheepshead minnow): 107083732
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Entry
107083732 CDS
T06110
Symbol
dfnb31
Name
(RefSeq) whirlin
KO
K21879
whirlin
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cvg03037
]
107083732 (dfnb31)
Cilium and associated proteins [BR:
cvg03037
]
Primary cilia and associated proteins
USH complex and associated proteins
107083732 (dfnb31)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
HHD_RTEL1
T15H9-4_C
USH1C_N
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
107083732
NCBI-ProteinID:
XP_015228658
LinkDB
All DBs
Position
Unknown
AA seq
979 aa
AA seq
DB search
MSSTDLERMSLSSSANSVASSARTLSANVRKLHNALNLLLSDFEREQFIHCLNVYHSKRN
VYDLVQTLNVILNAPSKRQLLPMLRLVIPRSDQLLFEQYTSEGLYLKSDLVANNGHADPP
SGDFPSASPTPSGNLSPNKPPELQVALRGSPDSFSTSSEGTAPLVPLLGRNFIHEPPGEL
RQVTMKRHKSNEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKQGLRIGDQIMKVNDKVFDK
VTHAEAVKVLKGSKKLNLSVRSVGRIPGGYVTNHVYTWVDPQGRSVSPPPDLLEHRSATL
RRTDSQRRSNMQLLQEGDEKKVNLVLDDGRSLGLMIRGGAEYALGIYITGVDKGSAAECG
GLKVGDQILEVNGHNFLSIPHDEAVRVLKSSRHLMMTVKDVGRLPHARTVVGETKWIASS
QIGESSANSSLASFSGDQGASVAGKPGFYKGVAGSQVTLSSLVNQSRAMLEEQARHLLTE
AECQTMSYYVEEYRDGHIGIEQLVMALFELLNTHAKFSLLSEVRGLVTPQDLERFDGMVL
RREIQALKARQGTTGATNMQPDCLSMVSYPDTLTSSSASFMTNTTLSSARERLLWLIDMM
ENDSVAESNEGDPPESLNTLLTDISLDDVQSTAGEPPPSFKPPPPPGVQRRQGRREVLIK
CPSSESSQSGLCFTAPSSHSHSREPANITSSPSLRHKRDASREYAAIKKKHPSSQLKKDK
ITSAQLATVSQHNIGPFPRVQSPSRGPNLTAPSPSPPPPPPLPAPPPPPSLSSKPGSLSK
AAPGSSPATKQQFVTVEVHRPNAEPDVNEVRPLPQARGGALSQLSDSGQTLSEDSGVDIP
ESGHVSKDNSPNSSGTRLPRDSQEGHGGGGGGDNPSKPPGLLEPTSTLVRVPKSASTLGI
AIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGQIILEVNGVSLRGREHRDAARIIAEAF
KTKEKDYVDFLVTEFNVAL
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaccgacctggagcgcatgtcgctcagctcctcggccaactcggtggcttcc
agcgcccgcacgctgtcggccaacgtgcggaagctgcacaacgcgctcaacctcctgctc
agcgacttcgagagggagcagttcatccactgcctcaacgtttaccactccaagcgcaac
gtttacgacttggtgcaaaccctcaacgtgatcctcaacgcgcccagcaaacggcagctg
ctccccatgctgcggctggtcatcccccgctcggaccagctcctgttcgagcagtacacc
tcggaggggctttacttaaagtcggatttagttgcaaacaacggccacgccgacccccca
tcgggagacttccccagcgccagtccgacaccctctgggaacctgtcgccgaacaaaccc
ccggagttgcaggtcgcgctgcggggctccccggacagcttcagcaccagcagcgagggg
acagctccgctggtgcctctgctcggcaggaacttcatccatgagccgcccggggagctg
cgccaggtcaccatgaagcggcacaagagcaacgagggcctgggcttcagcatccgcggc
ggctcggagcatggagtggggatctacgtgtccctggtggagcccgggagcctggcggag
aaacaggggctccggatcggcgatcagattatgaaagttaacgataaagtctttgataaa
gtcacccacgctgaagcggtgaaggtgctgaagggcagcaagaagctaaatctctcagtg
cgctcagtcggaaggattccaggaggctatgttaccaaccacgtttatacctgggtggat
cctcagggtcggagtgtgtctccccctcctgatctgctcgagcaccggagcgccacgctt
agaaggacagacagtcagcgacgcagcaacatgcagctcctacaagagggagacgaaaag
aaggtgaacttggtgctggatgacggacggtctctgggtttgatgatcagagggggagct
gaatacgctctgggaatttacatcactggggtggacaaaggatcagcagcagagtgcggc
ggactcaaggtcggcgaccagatcttggaggtgaacggccacaacttcctgagcatcccg
catgacgaggccgtcagggtcctcaagtcttcgcggcacctcatgatgacggtgaaagac
gttggacgcctgccgcatgccaggacggtggtgggggagaccaagtggattgccagctcg
cagattggcgagagctccgccaacagcagcctggcgagcttctctggggaccaaggagct
tctgtagcaggaaagcctgggttttataaaggagtggcagggtcgcaggtgaccctgtcc
agtctggtcaaccaatcccgtgccatgctggaggagcaggcacgccacctgctgactgag
gccgaatgtcagacaatgagctactatgtggaggagtacagggacgggcacatcgggatt
gagcagctggtcatggcgctgttcgagctgctaaacacgcatgcaaagttttcccttctg
tcagaggtgcgaggccttgtcaccccgcaagatctggagcgctttgatgggatggtgctc
cggcgggagattcaggccctcaaagctcgacaggggaccacaggggccacaaacatgcag
ccggactgtctctccatggtgtcttatccagacacgctgacatcatcgtcagccagcttc
atgaccaacacaacgctcagctctgcacgggagaggctgctgtggctgatagacatgatg
gagaacgacagtgtggcggagagtaacgagggggatcctccggaaagcctgaacactctg
ctgactgacatctctctggatgatgttcagtccactgcaggagagccccctccttccttc
aagcctccgccccctccgggggtgcagaggcgtcaaggtagacgagaagttctcatcaag
tgcccctcatccgaatcctcccagtcagggttgtgcttcacagcaccgagctcccacagc
cacagcagagagccggccaacataacctcctcaccttcactgcgccacaaacgggacgcc
tcgcgggaatacgctgctatcaaaaagaaacatccctcatctcagctcaagaaagacaaa
ataacctccgctcagttggccacagtctcccagcataacatcggccccttccccagggtg
cagtctcccagcagaggccccaaccttacggccccgtccccatctcccccaccgccgcct
ccacttcctgcccctccaccacccccctctctttcctctaagccggggtccttgtccaaa
gctgccccgggctcatctcctgccaccaaacagcagtttgtaacggtggaggtccacagg
cccaacgctgaacctgacgtcaacgaggtgcggccgctgccccaggcccgaggtggagca
ctgtctcagctgtctgacagcggacaaaccctcagcgaggacagcggtgtggacatacca
gagtcaggacacgtcagcaaagacaacagccccaattcctcaggaacacgccttccccgt
gactcccaggaaggacacggaggaggaggaggaggtgacaacccctccaaaccgccgggc
cttttggagcccacctccactctagtgagggtgccaaagagtgccagcacccttggtatc
gccatcgagggcggcgcaaacactcgccagccgctgccacggatcgtcactatccagagg
gggggctcagcccataactgcggtcagctgaaggtcggtcagatcatcctggaggtaaac
ggggtttctctgagaggcagagagcacagggacgccgctcgcatcatcgctgaggctttc
aagaccaaagagaaggactacgtggacttcctggtgactgagttcaatgtggccctatag
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integrated database retrieval system
