Cyprinodon variegatus (sheepshead minnow): 107083739
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Entry
107083739 CDS
T06110
Name
(RefSeq) probable voltage-dependent N-type calcium channel subunit alpha-1B
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04010
MAPK signaling pathway
cvg04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
107083739
04020 Calcium signaling pathway
107083739
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cvg04040
]
107083739
Ion channels [BR:
cvg04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
107083739
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
EGF_Hmr-1
Motif
Other DBs
NCBI-GeneID:
107083739
NCBI-ProteinID:
XP_015228664
Ensembl:
ENSCVAG00000010038
LinkDB
All DBs
Position
Unknown
AA seq
2462 aa
AA seq
DB search
MRRSVPYNSRWAERRSTVVYAVRSATFGSWRMLTLGADYVDTWVQSPDRRRETLKRAEVD
QTPAEKTEAYTEEPAEPSWRTIHEGISQGDDTVLTLDGVSRAATRDGVHRALWRHDTLNH
SPLTQRMARFADDLPSRYGGSTVGGGRGGPGAGRGGARGGGAGGAGGGGAQRMYKQSMAQ
RARTMAIYNPNPVKQNCFTVNRSLFIFREDNLIRKYAKRITEWPPFEYMILATIIANCIV
LALEQHLPASDKTPMSERLDDTEPYFIGIFCFEAAIKIIALGFAFHKGSYLRNGWNVMDF
VVVLTGILATVGSDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLF
FAIVMFAIIGVEFYMGKFHQSCFKPGAERVVDWPCGSELPARTCPNGTVCQEYWTGPNFG
ITNFDNILFAVLTVFQCITMEGWVDILYSTNDAVGNNWNWLYFIPLIIIGSFFMLNLVLG
VLSGEFAKERERVEKRQEFLKLRRQQQIERELTGYLEWICKAEEVLLEEEDEIADEKSPL
DGAWYKRKQNLSVLKRGKIKKGKNDLIGAEEGEDPFADMSSAVPPGSPFGRASVKSGGKM
DSSTYFRRKEKRFRFFIRRMVKAQSFYWIVLCLVGLNTLCVAIVHYDQPEWLTRALYTAE
LVFLGLFLTEMTLKMYGLGARNYFHSSFNCFDFGVIVGSIFEVIWDLIKPGASFGISVLR
ALRLLRIFKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFE
DETPTTNFDTFPAAILTVFQILTGEDWNAVMYHGIESQGGVRRGMFSSIYFIVLTLFGNY
TLLNVFLAIAVDNLANAQELTKDEEEQEEAANKKLALQKALEVKEVSPMSAANISIAAFV
KQNRDALSRRSSVTSIQSPSYTVYYTPTRHILKYSKEQQRSAKTMSVWEQRTNQLRKHNM
KTSTEALFNELDPEENLRISSTLHLHPDMTTHSDRPLVVEDKNGDQTKAGVQQDAGGPRQ
GTVRDSFHTHSRRHYHHRDRNGEGGDSQGGRHHSHHSRSREHNGNGSQDKERSGNHEGQR
HHHQTGSPEEDARPGGGGGEERGHRHHRSRRTLKEGNGRLTNGAQEEGKGRGDSNGEKRL
RSTRTSKAQFTLSGDECKGNKNGSKSHRDRQADTEEGSLAGSPFQLKRSSLTPSEKQEDA
DNQKNSTRASQAGLNSNAVHIPVTVTAPPGETTIIPMNNIDCDNFRLSEEKKDLEEEEAA
NGPRQILPYSSMFIFGQTNPVRRLCHYVVNLRYFEMCILMVITMSSITLAAEDPVQANAP
RNNVLKYLDYVFTGVFTFEMVIKMIDLGLLLHPGSYFRDLWNILDFIVVSGALVAFACSS
LMGSQQSVARGTKGKDINTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILI
VYILFMFIFAVIAVQLFKGKFFYCTDESKGLEKDCRGQFLEYDHKEVTAQPREWKKYEFH
YDNVLWAFLTLFTVSTGEGWPLVLKHSVDATYEDQGPSPGFRMETSIFYVVYFVVFPFFF
VNIFVALIIITFQEQGDKAMSECSLEKNERACIDFAINARPLTRYMPENKQSFQYRMWKF
VVSSPFEYAIMTLIALNTVVLMMKFYGAPTVYESMLKYLNIVFTGLFTLECILKIIAFNP
LNYLKEPWNVFDFVTVIGSITDILFTEINTNKMINLSFLRLFRAARLIKLLRQGYTIRIL
LWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVSGVNDMHLLNQSGFLNIRMLNLFVAVIM
DNFEYLTRDASILGPHHLDEFIRVWAEYDPAACGRISYRDMYEMLRDMSPPLGLGKKCPP
RIAYKRLVRMNMPIADDNTVHFTSTLMALIRTALEIKLASGVLAQRLCDADLKREINRVW
PNLQQKTVDLLVTPHKYNELTVGKVYAAHMIFDYYKQNRAKKLQQQNPSGISQSKLSALF
RPVLPFTHLHEAAPPIKPPPPPDPEPEPKPEVPPSTTINSSSKRATALNQRSNIKHSQSG
DFSQAPQRHKARRRLQRGQSEDVPCSTRAQEQRADPKPVENVSDSEGYPSLEGHTRAASL
PRLNAEYHRSHPRHAPGTHLAPIVDLSPIKRSLSSLTPQRPQQEAGLRDYDLERVDQNRV
PASTDQGQGQERAHHHHHHHRCHRRRDKDKKQKSLDNPSSVQPSRTAGSFEDPSADGLSR
ERARERDRSRPHERRHHSSAGEKQRYYSCERYGSREHCQARSAGPSRSASPGESLDTGLI
KQQGGSVVKLSSGNNMHGRGRRQLPQTPLTPRPAVAYKTSTSSAPPSSASTSTAGPQARF
CRGIPEHDRLLAGHEESKTPVTSVSSDSNSNRQQLDSPQQALLEEGEDFQDAVSSHGGGH
SSRSSAPTSSSQGSAATPVTAAAMQGRAAGVPNGYHFTLGSASGPGSRGTAGLREQEEED
WC
NT seq
7389 nt
NT seq
+upstream
nt +downstream
nt
atgaggagatcagtaccctacaactccagatgggcagagagaagatccacagtggtttat
gcggtccgctcagccacctttggctcctggaggatgctgacactgggggcagactatgtg
gacacctgggttcagtcacccgacaggaggcgggagactttaaagcgagctgaagtggac
cagacccccgctgagaagacggaggcttatacagaggagcccgctgagccgtcatggaga
accatccatgaaggaatcagccaaggagatgacacagttttaaccttagatggagtaagc
agagcggcaacaagagatggtgttcacagagctttgtggaggcacgacacgctgaaccac
tccccgctgacccaaagaatggctcgcttcgctgacgatctacccagccgctatggaggg
agcacggtcggcggagggagaggcggaccgggcgccgggagagggggcgcccggggcggc
ggcgcaggaggcgcaggcggcggcggtgcccagaggatgtacaagcagtcgatggctcag
agagcccgaaccatggctatttacaacccgaaccccgtcaagcagaactgcttcactgtc
aaccgatccctgttcatcttccgagaggacaacctcatcaggaagtatgcaaagcgaata
acagagtggcctccatttgagtacatgatcctggcaactattatcgccaactgtatcgtc
ttggcattggagcaacatctacctgcaagtgacaaaacgccaatgtcggaacgcctggac
gacacagagccctactttattggaatattctgtttcgaggccgccattaagatcatcgcc
ctgggcttcgcgtttcacaaaggctcctacctccgcaacggctggaatgtaatggacttc
gtggtcgtactcacaggcatcctggccacggtgggttcagactttgacctgagaactctg
cgagccgttagagtgctgaggcccctaaaactggtgtcagggattcctagtctccaagtt
gtcctgaaatccataatgaaagccatggtgccgctgcttcagatcggcttgctgctcttc
ttcgccatcgtcatgttcgccattatcggggtggagttctacatggggaagttccatcag
tcctgtttcaagcctggcgctgaaagagtggttgactggccatgtggttccgagttacca
gccaggacttgccccaatggcactgtttgccaggaatactggaccggacctaattttggc
atcaccaactttgacaacatcctgtttgcagtgctgacagtgttccagtgcatcacaatg
gaaggctgggtggacatcctctacagtactaacgatgcagtgggaaataactggaactgg
ctctacttcattcctctcatcatcatcggttcttttttcatgctcaacctggtgcttggt
gtcctgtcaggagaatttgccaaagagcgagagcgagtggagaagaggcaagagttccta
aagcttcgccgacagcagcagatcgagagggagctcactggatatctggagtggatctgc
aaagcggaggaggtgttgcttgaagaagaggatgagattgctgatgagaagtccccgctg
gatggtgcgtggtacaaaaggaaacaaaacctttcagttctgaaacgaggcaaaatcaag
aagggcaaaaacgacctgattggtgctgaggaaggcgaggatccctttgctgacatgtct
tctgctgttccacccggttctccttttgggcgagccagcgtgaaaagcggtggaaagatg
gacagctcaacttacttccggcgtaaagagaaaaggttccgcttcttcattcggcgtatg
gtgaaagcccaaagtttctactggattgtcctgtgcttggtgggtctcaacactctctgt
gtggccatcgtacattacgaccaacctgagtggctgaccagagctctctacacagcagaa
ttggtttttctgggcttatttctaacggagatgactttgaagatgtacggccttggagcg
agaaattacttccactcatcctttaactgttttgattttggggttatcgtaggaagtatt
tttgaggtaatctgggacctgattaaaccgggagcatcgtttgggatcagtgtgctgagg
gccttaagactcctaaggatttttaaagtcaccaaatactggaactcgttgagaaatctt
gttgtttccctcctcaactccatgaagtccatcatcagcttgctcttccttcttttcctc
ttcatcgtggtcttcgctttgcttggcatgcagctcttcggtggacagtttaactttgaa
gacgagacaccaacaacaaactttgataccttcccagcagccatcctcactgtgttccag
attctgactggtgaggactggaacgccgtcatgtaccatggcattgagtctcaaggaggt
gttcgacgtggaatgttttcctccatctacttcatcgtcctcacactttttggaaactat
actctcttgaatgtcttcttggccattgctgtggataatctcgccaatgcccaggagctg
actaaggatgaagaggagcaggaggaggcagccaacaagaagctagctctgcagaaagct
ctggaagtaaaagaagtcagtccgatgtcagctgctaacatttccatcgctgcttttgta
aagcaaaatcgagatgcgctctctcgcaggtcgtccgtcaccagcattcagtcaccgagt
tatacagtctactacacccccactcgacatatcttgaaatacagtaaggagcagcagcgg
tctgcaaagaccatgtctgtgtgggagcagcggaccaaccagctgaggaagcacaacatg
aagacaagcaccgaggctctgttcaatgagctggatcccgaggagaatctgaggatttcc
agcacgctccatctgcatcctgacatgacgactcacagcgaccgaccgctggttgtggag
gacaagaatggtgatcagaccaaagctggtgtgcagcaggatgcgggagggccccgacaa
ggcactgtgagggacagcttccacactcactccaggaggcattaccaccaccgagacaga
aatggggaaggaggcgacagccagggaggtaggcaccacagtcatcatagccgcagcaga
gaacataacggaaatggttcccaggacaaagagaggtccggaaaccatgaaggacagaga
caccaccaccaaactggttcgcctgaggaagatgcacgcccaggaggaggaggaggagag
gaaagagggcatcgccaccaccgctcgcgtcggactctgaaggaaggaaacgggcgtttg
acaaatggagcacaagaagaggggaaagggagaggggacagcaatggggagaagaggctg
cgctccacccgtacgtctaaggctcagttcactctgagtggggacgaatgtaaggggaac
aagaatgggtccaaaagtcacagggatagacaggcggatactgaggagggcagccttgct
ggaagtcctttccagctgaagcggagtagtttaactccaagtgaaaagcaagaggatgct
gacaaccagaagaactccaccagggccagccaggctggcctcaacagcaacgctgtccac
atccccgtgactgtgaccgccccacctggagaaaccaccatcattcctatgaacaacatc
gattgtgacaacttccggctcagtgaggagaaaaaagatctggaagaggaggaggcggct
aacgggcctcggcagatccttccctacagctcaatgtttatctttggacaaacaaacccg
gtgcgacgcctgtgtcactatgtggtcaacctgcgctactttgaaatgtgcatcctgatg
gtcatcaccatgagcagcatcacgctagcagccgaggacccggtgcaggccaacgctccc
cggaacaacgttcttaaatatctggattatgtctttactggagtcttcacgtttgagatg
gtgataaagatgatcgacctcgggctgctcctccaccccggctcttattttcgtgacctt
tggaacatccttgattttattgtggtcagtggagctctggtggccttcgcctgctcgagc
ctcatgggatcacaacaaagtgttgccaggggaacgaagggaaaggacatcaacaccatc
aaatccctcagggtcctacgagtcctgcggccgttgaagaccatcaaacggctgcctaag
ctgaaggctgtattcgactgtgttgtgaactccctgaagaacgttcttaacatcctcatc
gtctacatcctcttcatgttcatctttgctgttatcgctgtgcagctcttcaaaggcaaa
ttcttctactgcaccgatgagtccaagggtctagagaaagactgcaggggtcagtttttg
gaatatgatcataaagaagtgactgctcagcccagagagtggaagaagtatgagtttcat
tatgataatgttctctgggctttcctcacgctctttaccgtctccaccggagagggctgg
ccattggttctgaagcactctgtggatgccacatatgaagaccagggcccaagcccaggc
ttccgcatggagacgtccatcttctatgtggtctacttcgtggtctttcctttctttttt
gtcaacatttttgtagctttgatcatcatcaccttccaggaacaaggagacaaggctatg
tcggagtgcagcttggaaaaaaatgagagggcttgcattgacttcgccatcaacgccagg
ccgcttacaagatacatgccagagaacaagcagtccttccagtataggatgtggaagttt
gtggtgtcgtcaccttttgagtatgccatcatgactttaatcgccctcaacacagtcgtg
ctgatgatgaagttctacggagctccgacggtgtacgagtctatgctgaaatacctaaac
atcgtcttcactggcctcttcacactagagtgcatcctcaagattattgctttcaatcca
ctgaactacctgaaggaaccgtggaatgtgtttgactttgtgactgtgatcggaagcatc
acagacattttgttcacagagatcaatacgaacaagatgataaacttgagttttttgagg
ctgttcagagcagctcgtctcatcaagctgctgcgacagggctacaccatccgtatccta
ctgtggacctttgttcagtccttcaaggctctgccgtatgtctgcctgcttatcgccatg
ttgtttttcatctacgccattattgggatgcaggtgagtggtgtcaatgacatgcacctc
ctgaatcagtctgggttcctaaatataaggatgttaaatctgtttgtggccgtcatcatg
gacaactttgagtatcttactcgggacgcctccatcctcgggcctcaccacctcgatgag
ttcatccgtgtgtgggctgaatatgaccccgctgcctgcggccgcataagttaccgtgac
atgtacgagatgcttcgcgacatgtctcctccactaggtctgggaaagaaatgtcctccc
cgaatcgcctataagcgactggtgagaatgaacatgccgatcgctgatgacaacacagtt
catttcacctccacgctgatggctctgatccgcaccgccctcgagatcaagctggcatcc
ggtgtcctggcgcagcgtttgtgtgacgctgacctgaagagggaaatcaaccgagtgtgg
ccaaacctgcagcagaagactgtcgacctgcttgtgacgccacataaatataatgagctg
acagtgggaaaagtctacgctgctcacatgatctttgattactacaaacagaatcgagca
aagaaactccaacagcagaacccatctgggatctcacagagtaaactgagcgcgttgttc
cgtcctgtgcttcccttcactcacttacacgaggcagcgccgccaatcaaaccacctccc
ccaccagaccctgagccagaacccaaaccagaagtcccacccagcaccaccatcaacagc
tccagcaaacgtgcaacagcgctgaaccagaggagcaacataaaacattcccagtctgga
gatttttcgcaggcacctcagaggcataaagcccggcggaggctgcagagaggccagtca
gaggatgtgccgtgctccaccagagcacaggagcagcgggccgatccgaagccggtggag
aatgtttcagactcagaggggtatcccagcctggagggccataccagagctgcatctctc
cctcgcctaaatgccgagtaccaccggagccaccctcgccacgcccccgggacccacctg
gcaccaatcgttgatctcagcccaatcaaacgctcgctgtcctcgctgacgccacagcgc
ccccaacaggaggcaggtttgagggactatgacctggagcgggtcgatcagaaccgggtt
cctgctagcacggatcagggccagggtcaggagagagcccaccatcatcaccaccatcac
cgctgccatcgacgcagggacaaggacaagaaacagaaatctttggacaatccgtcctcc
gttcagccgtccagaacagccgggtcatttgaggacccgtcagctgatggtctgtccaga
gaacgagcgagggagcgggaccgcagtcgccctcacgaaaggaggcaccactcctctgct
ggggagaagcagcggtactactcctgcgagcggtacggcagcagggagcattgtcaggcc
aggtcggccggtccgagccggtccgcatctccaggagagagcctagacactggtcttatc
aaacagcagggaggctctgtggtgaaactgtcttctggtaacaacatgcatggccgtggt
cgtaggcagctcccgcagacgccgctcacacctcgcccagctgtggcctacaagacctcc
acctcctcggctcctccatccagcgccagcacctccacggctgggcctcaggctcgcttc
tgccgtggcataccagagcacgaccgcctgctggcgggtcacgaagagtctaaaacccca
gtcacctccgtcagttcggactctaactccaacaggcagcagttggactcccctcagcag
gccctccttgaggagggcgaggacttccaggacgctgtgagcagccacggagggggacac
tcttccagaagctccgctcccacctcgtcctcgcagggtagcgctgctacgcccgtcacc
gcagccgccatgcaggggcgggcagcgggagttccgaacgggtaccacttcactctgggg
tctgcgtcggggcccggtagcagaggaacagcgggtctcagggagcaggaggaggaagac
tggtgctag
DBGET
integrated database retrieval system
