Cyprinodon variegatus (sheepshead minnow): 107083834
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Entry
107083834 CDS
T06110
Symbol
ttc37
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107083834 (ttc37)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107083834 (ttc37)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
107083834 (ttc37)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_14
TPR_16
TPR_11
TPR_19
TPR_17
TPR_8
TPR_CcmH_CycH
TPR_12
CFAP70_TPR_C
TPR_9
ANAPC3
CFAP70_mid_TPR
CABIN1_N
TTC22_N
TPR_7
PknG_TPR
RPN7
TPR_15
Motif
Other DBs
NCBI-GeneID:
107083834
NCBI-ProteinID:
XP_015228816
Ensembl:
ENSCVAG00000007124
LinkDB
All DBs
Position
Unknown
AA seq
1570 aa
AA seq
DB search
MSNKEVKAALKSAREAINNKEFKEVLKHCKAVLKLEKNNYNAWVFIGKAASELEQPDQSQ
AAYKKAVELEPEQLLAWQGLANLYENTDQWDFKDELPNVYQKLVELYARTDKNKSYDMIK
KLSDIYLSDREYLKLAKVWLQLVQLKEEDGAEKKELVQLLQTMTQLLSDCITENEKQDNE
TQQHLITAFEKAMTLTEPMPGEEHRKLSADFIKYLSKLPHEEVKMKEACRSMLSVYPNQS
YPLEVLCSHFLKTSNVDDDAVSCFSRLLELVPNSGLGHLGLGTKALLEGRYKEAVDDLAK
GLKKTSSAGGWYSLAEAQFKIHRYSDSAASSSQGLNVCTSDDKKLRDKLLRLKLEALVRT
EGELAADQALETFSQIPEAVKDPVLLALKGRAHLNKGQLDQTLKLLSELEASNPSLPQGL
TLRGLAHLAEGQLQLAEQSFLQAAKQTPDSGECFFLLGKLYWDMGSETRKDRSKTHTHLL
KAAKLDPHLGCAFRYLGHYYREVANDSARAQGCYRKAFQLNSDDAESGAASVDLSMGQGD
MESAMATLESVIEKATPGSAKWAWMRRGLYHLKVGEHQQAISDLQAALRADPEDWVCWEC
LGEAYLNRRSFTAALKSFGKAHQLHPGSIYSVYQAAAIKQTLGKFKEAVDEYLQITTQQD
YVPALKGLGECQLSLAKSLMEDCRDGGAIDLIQQAIHNLYRAVQLRPDLSCLWKLLGDAC
TAVRVVSPNRAQVEVPTLLTGFDSSKQDHRLNQTETLKAGERCYAHALKLMPEVASLWYD
LGFNYYHQATISPSDQHQDCPPLNLQKAQQCLKKAIQMDSENHTYWNALGVISMSKGLES
YGLAQHCFIKSIQVEPNNVVAWTNLGTLYLKKDNIELAHEAFKIAQSLEPLYVNCWIGQA
LIAERVGSYDTMDLFRHTTELCTHMEGVKGYAYWVCSTLLDKTNRDSELYRYNIVQMNAV
SAAHVALCKYTERIQSDPDAFIMLGYLNEHLQLKRQALQAYRRAVELLKSTSSSDLLVFS
LGGYARALCNSGQWEEAVQVFNSTPLQDLTELVGLALAYCRAGLFPESISAYERALAVTS
NEKEKAYILTALALLQHRMGNLDSAKTLLFKCSVLKEPISESLLCLCALGLVHSDATLAA
AALTELLKQGSASGGVVEQRCLLTCSLLALQGNYSAVQREASRAVHSNPGNASLWALLSR
VIPQYYPRKARGGAVAGHIACLFSMTQGKRALLYSGVNQVAYGKHTGEDPHRNAFKTLQK
AVVLCPDDPATWAGLMAACHTENTACYLSGSPPHRQSLEHTLMSVVSEKVHNVEEMERPL
AQALEGWVLQQAVLGLRQQGQLEQAEALCMQVLSVSPEHPAVLLSLTQVQCQRLLLTEGG
TVLPEQVLEQLNKAVLMNPTNLGAWHWLAEVYRNQGLLVQAVMAYRQSLQLALQLGAHSF
QVASLLRLALLALGPCMAGVPGNDWKDLVMEATTEVLKLGSSPMALLFQALLQYVNKMTA
RETRRLLERLVYVSSDDTPVTVVQVASWYLLRLLHAKNDQELINVLLQHAKTTGNQRLLE
LHSQLTSSSS
NT seq
4713 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacaaagaagtgaaagccgcactgaaaagtgccagagaagccattaacaataaa
gagttcaaagaggtcttaaagcactgcaaggctgttctgaaacttgaaaagaataattac
aatgcctgggtgttcatcggcaaggcagccagcgagctggaacaacccgatcagtcccaa
gcagcttataaaaaggcagtggagctggagcctgagcagctgctggcctggcagggattg
gcaaatctttatgaaaacaccgatcagtgggatttcaaagatgaactgcctaatgtctac
cagaagcttgtggagctttatgcaaggacggataagaataaaagctatgacatgatcaaa
aagctgtcagatatttatctgtccgacagggagtatttgaagctggctaaggtttggctc
cagctcgtccagctgaaggaggaagacggcgcggaaaagaaggagttagttcagttattg
caaacaatgacccagctcctgtctgactgcatcactgagaatgagaagcaggataacgag
actcagcaacacttgataacggcgtttgagaaagccatgacactcactgaaccgatgcct
ggagaggagcacaggaagctctcggctgattttattaaatatctctctaaactaccacat
gaggaagtcaaaatgaaagaggcgtgtcgctccatgttgtctgtgtatccaaaccaaagc
tatcctctcgaggtcctttgcagtcattttctcaaaacaagtaacgtggatgatgatgca
gtcagctgtttctccagactcctggaactggtacctaacagtggattgggtcacttgggt
ctgggtaccaaggctctgctggaggggaggtataaagaagctgtagatgacctggcaaag
ggattaaagaaaacaagctctgcaggtggatggtacagtctggctgaggctcagtttaaa
atacacagatactccgacagcgctgcatcaagctcacaaggcttaaatgtttgtacttct
gatgacaagaagctaagagacaaactccttcgactgaagctggaggctttagtgagaact
gaaggagagctggctgctgatcaggctctggaaacattttcccagattccagaggctgta
aaggatccggttctgttagccctgaaaggacgagcgcacctgaacaaaggacagcttgat
caaacactcaagctgttgtcggagctggaagcgtccaaccccagcctgccccagggactg
actctgagaggactggcacatttggctgagggtcagctccagttggcagagcagagcttc
ttacaggcagcaaagcagaccccagacagcggggaatgttttttcctccttggaaaactt
tactgggatatgggctcagaaactcgtaaagaccgcagtaaaacacacacacacctgtta
aaggcagcaaagttagatccacatcttggctgtgcgtttcgctacctgggtcattattac
cgagaggtggcaaatgatagtgctcgtgcacaagggtgctacaggaaggcattccagtta
aacagtgatgatgctgagtctggagctgcttcagtggatcttagtatgggacagggagat
atggagagtgccatggcaacgcttgagtctgtgatagagaaagcaactccaggctcagct
aagtgggcctggatgagacgaggtctgtaccacctgaaggttggagaacatcaacaggcc
atatctgatctgcaggctgctttgagggcagatcctgaggactgggtttgctgggaatgt
ttgggcgaggcctacctgaacaggcggagcttcacagcagctctgaagtccttcggcaaa
gcacatcagcttcaccccggctccatctacagcgtttaccaggcagctgccatcaaacag
actctggggaagttcaaagaggcggtggatgagtatttgcaaatcacaacgcagcaggac
tacgtccctgctcttaaaggtcttggggagtgccagttgtctttggcaaagagtttaatg
gaagattgcagagacggaggagcgatcgacctcattcaacaagccatacacaacctctac
agagcggttcagctgcggccagacctgtcttgtttgtggaagctgctcggtgacgcctgc
accgcagttagagttgtttcgcccaacagggctcaggttgaggtgccaaccttactgact
ggatttgactccagcaaacaggatcacaggctgaaccaaactgagacactcaaagctgga
gaaaggtgttacgctcatgctttgaagttgatgcctgaggtggccagcctttggtatgac
ttagggttcaactattaccaccaggccactatctccccttcagatcaacaccaagactgc
ccccctttgaacctgcagaaggcccagcagtgcttgaaaaaagctatccagatggacagt
gagaaccatacctactggaatgccttgggagtgatttccatgagcaaaggtctggagagc
tacggtttggctcaacattgcttcattaagtccatccaagttgagccaaataatgttgtc
gcgtggacgaacctcggtacgttgtatttaaaaaaggacaatatagagcttgcacatgaa
gccttcaaaatcgcccagtctttggagccactgtatgtcaactgctggattggacaggcg
ctgatcgcagagcgcgtgggaagctacgacaccatggatcttttcaggcacaccactgaa
ctctgcacacacatggaaggagtcaaaggttatgcctactgggtttgttccacccttttg
gataagactaacagagacagtgagctgtaccgctacaacatcgtccaaatgaatgccgtc
tctgctgctcatgtcgcgctctgcaagtacacagaaagaatccagtctgatccagatgct
tttattatgctgggttaccttaatgaacacctccagctgaagaggcaggccttacaggct
taccggagagctgttgaactgcttaagtccacatcctcttcagatctgttggtcttttca
ctcggcggatacgcccgtgctttatgcaattcaggccaatgggaggaagcagtgcaggtt
tttaattccactccacttcaggatctaactgagctggtagggcttgcactggcctactgc
agggccggactcttcccagagagcattagcgcatatgagcgtgccttagctgtgacgtcc
aatgagaaggagaaggcttatattttgactgctctggctttgctgcagcaccgaatgggc
aacctggactctgccaaaactctgctttttaaatgttccgtcttaaaggagcccatctca
gagtctctgctttgtttatgtgcgctgggattggtccacagtgatgctacactagccgct
gccgccctgactgagctgctgaagcaaggttcagcatcagggggggttgtagagcagcgg
tgtctgctgacctgctccttgctggcccttcagggaaactacagcgcagtgcaaagagag
gcctccagagctgtgcacagtaatcctgggaatgcatccctgtgggctcttttgtccaga
gtaataccgcagtactaccctagaaaggcccggggaggtgcagtggcaggtcacattgcc
tgcctctttagtatgactcaaggaaagagggcgctgttgtacagtggagtaaaccaagtg
gcttatgggaaacatactggagaggatcctcacagaaatgcatttaagactctgcagaaa
gctgttgtgctctgtcctgatgatccagcaacatgggcgggattaatggcagcctgtcac
actgaaaacaccgcctgttatctttctggctctcctcctcacagacagtcactggaacac
actttaatgtctgtggtttctgagaaagtgcataacgtagaggagatggagcgccctttg
gctcaggctctggaaggctgggtgctacagcaggctgtgttaggtctaaggcaacaaggg
cagctggagcaggcagaggctctctgtatgcaggtcctcagtgtgtcaccagagcaccca
gcggtgctgctgtcactgacgcaggttcagtgtcagcgcctcctcctgaccgaaggcggt
actgttcttccagaacaggtcctggaacagctaaacaaagcagttctgatgaaccctaca
aaccttggagcatggcattggctggctgaggtgtatcgtaaccagggtctgctagtccag
gccgtcatggcatatagacagagtctgcagcttgccctgcagctgggggcacatagcttc
caggtggctagtctgctccgactggctctgttagcccttggaccgtgcatggctggagtc
cctggaaatgactggaaggatcttgtgatggaagccactacagaggttctgaagctgggc
tcttctcccatggccctcctcttccaggctttgctccaatatgtgaacaagatgactgca
agagaaacaaggcgtttgctggagagactcgtctatgtttcctctgatgacaccccagtg
acagtggtgcaggttgccagttggtaccttctcagactcttgcatgccaaaaatgaccag
gaactcatcaatgttcttttgcagcatgctaaaacgactggtaatcaaagactgctggag
cttcactcacagctgacgtcttcctcatcctga
DBGET
integrated database retrieval system
