Cyprinodon variegatus (sheepshead minnow): 107084711
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Entry
107084711 CDS
T06110
Name
(RefSeq) ribonuclease ZC3H12A-like
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107084711
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
107084711
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
107084711
NCBI-ProteinID:
XP_015230147
Ensembl:
ENSCVAG00000017420
UniProt:
A0A3Q2EBI8
LinkDB
All DBs
Position
Unknown
AA seq
619 aa
AA seq
DB search
MEFRMDQLLPGEFFDSDLQEQENEDLQLRVDFFRKLGYSTAEVKAALRKLGLSTDTNAVL
GELVRNRTTKTSPCASDNDETHPKDPLLPPSWDTGTYKIPPQLSDKKTEDSELRPIVIDG
SNVALSHGNKEVFSCRGIELAVDFFLDRGHDNITVFVPSWRKELPRADAPITDQHILLEL
EKQKILAFTPSRRVGGKRVVCYDDRFIVKLAYESDGVIVSNDTYRDLQGEKPEWKKCIEE
RLLMYSFVNDKFMPPDDPLGRHGPNLDNFLRKKPLPVEQKKVPCPYDKKCTYGIKCKYYH
PKRANHSYLSLADELREKAQISSGKEERKARSSVNYLQTDPEPSHLRQTYQKIRDQKSSS
VSDHILENKPLHWEDLRKSPNQMLSSVNGGKCQKEYLGLHFMPNHYHPNISQEYLDSGFG
SFESHYSDMHPSLSCTHTLGPQHQSPFVASQHASLHVEKKSYHCGGCCSHPQHQSNIECS
QPLYNTYHPNMFQHCVHQQRSLPAHFHNSGAPSLHHNYWSDPFLCAPQARASCPIPSLSY
PSCCHNACCSYKNPQYQTWGQQQPPPSAAFSQQRSEMRKKLHAIFNPLQVDQVMEMFPHL
MDAEKLAAEILNMKAQGMI
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggagttcaggatggaccagctgctccccggtgaatttttcgactcagatctccaggaa
caagaaaatgaggatctccagcttagagtggacttcttcaggaaactggggtactccaca
gcagaggtgaaagctgctttgagaaagctgggcctaagtacagacaccaatgcagtgctt
ggggagctcgtaagaaacagaaccaccaagacatcaccctgtgcttcagacaatgatgag
acgcatccgaaagaccccctgctgcctccaagctgggacactgggacctacaaaatccca
ccacaactcagtgacaaaaagactgaagattcagagctgaggccgattgttattgatggc
agcaatgttgccctgagtcatggaaacaaggaagtgttctcatgtcggggcatagagttg
gcagtggatttcttcctggacagaggacatgataatattactgtgtttgttccctcttgg
cgcaaagagctgccccgagctgatgcccctataacagatcaacacattctgctagagctt
gaaaaacagaaaatactggccttcactccgtcacgccgcgttggtggcaagcgagtggtt
tgttacgatgaccgcttcattgtcaaattggcgtatgagtcagatggagtgattgtgtcc
aacgacacctaccgtgatcttcaaggagaaaaacctgagtggaagaaatgcatcgaggag
aggctcctcatgtactcatttgtgaatgataagttcatgcctccagatgatcctttgggt
cgacatggacctaacctggacaactttcttagaaaaaagcccctgcctgtggagcaaaag
aaagtaccctgtccttatgataaaaagtgcacttatggcatcaagtgtaagtactaccat
cctaagcgggcaaatcactcctacctgtccctggctgatgaacttagagagaaagctcag
atttcttctggaaaagaggagagaaaggcaagatcatcagtcaactatcttcaaactgac
cctgagccttctcatcttagacaaacctatcaaaagattcgggatcaaaagagttcctct
gtttctgatcacattcttgaaaacaaaccactgcattgggaagacttaagaaaaagcccc
aaccaaatgctgtcttcagtaaatggggggaagtgtcagaaagaatatcttgggctgcac
ttcatgccaaatcattatcatccaaacatatctcaggaatatttagattctgggtttggc
tcctttgagagccattactctgacatgcatccatccctcagctgtacccacacacttgga
cctcagcatcagagcccctttgtggcatcccagcatgcctcacttcatgtggaaaagaaa
agctatcactgtggaggatgttgttcccatcctcaacaccagagcaacattgaatgcagt
cagcctctctacaacacttaccatccaaatatgttccaacactgtgtacatcagcaaagg
agtctacccgctcatttccataacagtggagcaccctccctccatcataattactggtca
gatccctttctgtgtgccccccaagccagagcatcatgccccatcccgtctttgtcctat
ccttcatgttgccacaacgcctgctgctcctacaagaatcctcaataccaaacctggggc
caacaacaaccaccaccttctgctgcattcagtcaacagagatcagagatgcgcaagaag
ctgcatgccatcttcaaccctctccaagtggatcaggtcatggagatgtttccacacctg
atggatgcagaaaagctggctgcagagatcctgaacatgaaagcgcaggggatgatctga
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