Cyprinodon variegatus (sheepshead minnow): 107085135
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Entry
107085135 CDS
T06110
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cvg03036
]
107085135 (chd5)
Chromosome and associated proteins [BR:
cvg03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
107085135 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
PHD_2
DEAD
Motif
Other DBs
NCBI-GeneID:
107085135
NCBI-ProteinID:
XP_015230796
Ensembl:
ENSCVAG00000016412
LinkDB
All DBs
Position
Unknown
AA seq
2002 aa
AA seq
DB search
MPGSLSNEDEGQDDMDFEDDMPDEDDETERNTVPLTALASFFSDDDSLKQQKKTKPKKIK
EGKIPKVKKRKKEGGLQVKHDSDLEEISEVEEEHERPEIGSESENSAYGPTKKKKKKPRE
KKERKPRKKKRDEDDDEEDDDDGNMKEPKSSSQLMDEWGLEDVQYGFTEDDYKTITNYKA
FSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGASATAVAAAVAAAVEMVTVA
QPASVNNSQLSSQQVTLKKAKTKEGKGPGVRKKSKTLKEVKKKPKPKKTKSKTGQSGKKK
KASSSEEDFLEESDFDDISIHSASVLSDTSGAITKKKARRGRKKRKKEDGDGYETDHQDY
CEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDEEEEEEE
PAGEEEDDHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLK
GKVQRILHWMWGEPPLPAEPPAGPDGKPIDPLTKPPLKGRPEREFFVKWAGLSYWHCSWV
SELQLELYHTVMYRNYQRKNDMDEPPPYDYGSGEEELNNEKRKSKDPQYAAMEERFYRYG
IKPEWMVIHRILNHSFDKDGDVHYLIKWRDLPYDQCTWEADDFDIPEYDIHKAFYWDHRE
QILGEDQRPLVVRKGKTLKDSYPKREVPPGAPIIDPTIKFEHQPWYINATGGTLHPYQLE
GLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWER
EFEMWAPDFYVVTYTGDKDSRATIRENEFTFEDAAIKSGRKVFRMKKDSPIKFHVLLTSY
ELITIDQAILGSVTWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEEL
FHLLNFLTPDRFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTEL
IVRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEA
PVLPNGSYDGNLLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFLEFEGYK
YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLASADTVIIYDSDWNPHN
DIQAFSRAHRIGQNKKVMIYRFVTRGSVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSK
QELDDILKFGTEELFKDEMEAARTMGDNKDGEEGNVIHYDDDAISKLLDRSQDATEDTEI
QNMNEYLSSFKVAQYVVKEEDEEEEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARN
LGKGKRIRKQVNYNDATQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRQSRRQL
KNEKDKPLPPLLARVGGSIEVLGFNTRQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKS
EREFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHV
NGKLSSPDLIPIGMELKKLTESVSSDPNTPVPASPVATQPSTPIPPEKAESLLRNAEDKE
TTETDGRKPSKQEQVPSAEVASVPEKAADSDETKATSEEKTGDETNRTKSPMTKAEPPAY
PKESAFKQAELPSSHTSPKTDPCKEAEKSSEKGEAGSPLEKTEDKENKPDDVKSEDALEG
RLNGDKDSLDELDESRKEDKNGFKAKFMFNIADGGFTELHTLWQTEERAALSSGKMHDIW
HRRHDYWLLAGIVTHGYARWQDIQNDPRYAILNEPFKTEMHKGNYLEMKNKFLARRFKLL
EQALVIEEQLRRAAYLNMTQDPSHPAMALNTRFAEVECLAESHQHLSKESLAGNKPANAV
LHKVLNQLEELLSDMKADVTRLPNMLSRIPPVSARLQMSERSILSRLTSRGNEPPPQQPF
SQGGFSCSQMYSSGFGGGFRGPGGQPMVNYSQMPLGPYVSVSSNGPPPPTSHLDKKSLDS
FRDGATPELKSGKASDVICIED
NT seq
6009 nt
NT seq
+upstream
nt +downstream
nt
atgccggggtcgctgagtaatgaagacgagggacaggacgacatggattttgaagacgat
atgccagatgaagatgatgaaactgagcgtaacaccgtaccactcactgcccttgcaagc
ttcttctctgatgacgactccctcaagcagcaaaagaagacgaaacccaaaaagataaaa
gaggggaaaatacccaaagttaagaagaggaaaaaagagggaggactacaggtaaaacat
gacagtgacctagaagagatttcagaggtagaggaggaacacgaaaggccagaaattgga
tcagagagcgagaacagtgcatatggcccaaccaaaaaaaagaagaagaaacccagagag
aaaaaagaaagaaagcccaggaagaagaagagagacgaggacgatgatgaggaggatgat
gatgatggtaacatgaaagaacccaaatcctccagccagctgatggatgaatggggtctt
gaggatgtgcagtatgggttcacagaggatgactacaaaacaattactaattacaaggct
ttcagccagttcctcaggccccttattgccaagaagaatccgaagattcccatgtcaaag
atgatgacagtgttaggagccaagtggcgggagttcagtgccaacaacccgttcaaaggt
gcatctgccactgctgtggccgctgcagtggctgctgccgtggaaatggttactgtagct
cagccagcatctgtcaacaacagccagctgagctctcagcaggtcacgttaaaaaaagca
aaaaccaaagaaggaaaagggccaggagttagaaagaaaagcaagactttgaaagaagtg
aagaagaaacccaaaccgaagaagaccaaatcaaaaacaggtcaaagtgggaagaagaag
aaagcatcctctagtgaagaggactttttggaggagtcagactttgatgacatcagtatc
cacagtgcctctgtgctttctgatacctctggggccatcaccaagaaaaaggcccggcgt
gggcggaaaaaaaggaaaaaggaggacggcgatggctatgagactgaccatcaggactac
tgtgaggtttgccagcagggtggagaaattatcctctgtgacacttgtccaagagcttac
caccttgtctgtctcgaccctgagttggagaaggcacctgagggaaaatggagctgtcca
cactgtgagaaagagggaatccagtgggaggccaaagatgaagaggaagaagaggaggag
cctgcaggtgaggaagaggatgaccacatggagttctgcagagtttgtaaggatggaggg
gaacttctgtgttgtgacacctgcccatcatcctatcacatccattgcctcaatccacct
ctgcctgagatcccaaacggagaatggttgtgtcctcgctgtatgtgcccacctctcaaa
ggtaaagtgcagaggattctgcactggatgtggggagaaccgccgctgccagctgagcca
cctgcaggccctgatggcaagccaatcgatccactgactaaaccccctctcaaggggcgt
ccagagagggaattctttgtaaagtgggctggcctttcgtactggcactgctcctgggtc
agcgaacttcagttggagctgtaccatacagttatgtatcggaactaccagcgcaagaac
gacatggatgagcctccgccatacgattacggctcaggagaggaggagctgaacaatgag
aagaggaagagcaaagacccacagtatgctgcgatggaggagcgcttttaccgctacggc
attaagccagagtggatggtcatccacaggatactcaaccacagttttgataaagatggt
gatgtccattacctaatcaagtggagagacttgccatatgatcagtgcacctgggaggca
gatgattttgacatcccagagtatgacattcataaagccttttactgggaccacagagag
caaattttaggagaggaccaacgccctcttgtggtgagaaaagggaagacgctaaaggac
agctatccgaaaagggaagtcccccctggtgcccccatcatagatccaaccatcaaattt
gagcaccagccctggtatattaatgccacagggggaacattgcacccataccagctggaa
ggcctgaattggttgcgattttcctgggctcaggggactgataccatcctggcagatgaa
atgggccttggaaaaacagttcagacaatagtctttctctactcactatacaaggagggt
cattctaaagggcctttcttggtgagcgcacctttgtccactatcatcaattgggagaga
gagttcgagatgtgggctccagatttctatgtggtgacttacactggagacaaagacagc
agggcaactatcagggagaatgaattcacctttgaagacgctgcaataaaatctgggcgc
aaggtgttccgcatgaagaaagactctcctattaagttccatgtgctgctgacatcttat
gagctgatcactatagatcaagccattctgggctctgtcacctgggcctgtctggttgta
gatgaggctcacagactgaagaacaaccaatccaagtttttcagaattcttaatggatat
aagatttactacaagctgctgctcactggaacgcctctccagaacaacctggaagagctt
tttcatctacttaacttcctcaccccagaccgtttcaacaatctggaaggcttccttgag
gagtttgcagatatctctaaggaggaccagatcaagaagctccacgacctcctgggacct
cacatgctgaggaggctgaaagctgacgtcttcaagaacatgccggcaaaaactgagctc
attgtcagagtggagctcagtcctatgcagaagaaatactacaagtttattttaacacga
aattttgaggctttgaactccaaaggtggaggaaaccaggtttctctgctcaacattatg
atggacctgaagaagtgttgtaaccatccctaccttttccctgttgctgctgtggaggct
ccagttttacccaacggttcttatgatggcaacttgttggtaaaatcttcagggaaacta
acactgcttcaaaaaatgctaaagaaactcaaagatgaaggacacagagttcttattttc
tctcagatgacaaagatgctggatctgctagaggatttcttggagtttgaaggctataaa
tacgaacgtattgatggagggattactggaggcttacggcaggaagccattgatcgcttc
aatgctccaggggcacagcagttctgcttcttgctttcaactcgagctggaggtctcggc
attaatttggctagtgcagacaccgttatcatctatgactcggactggaatccacataat
gacatccaagcttttagcagagcccacagaataggccagaacaagaaggtgatgatctat
cgttttgtgactcggggatctgtagaggagagaatcactcaggtagcaaagagaaaaatg
atgttgacccacctggtggtgcggcctggcctgggctccaaaacaggctccatgtccaaa
caagaactggacgacattctcaagtttggaacagaggaactttttaaggatgaaatggag
gcagcacggaccatgggtgataacaaagatggtgaggaaggcaacgtcattcactacgac
gatgatgccatttcaaagctgctggaccgcagccaggacgccactgaggacacagagata
cagaacatgaacgagtacctgagctcatttaaggtggcgcagtatgtggtgaaagaagag
gatgaagaggaggaggtagaacgagaaatcattaagcaagaggagaacgtagacccagac
tattgggaaaagctcctccgccatcactacgagcagcagcaggaggaccttgcacgaaat
ctgggaaaaggcaaacggattcgaaagcaggtcaactacaacgacgcgacacaggaggac
caagaatggcaggatgatctttcagacaatcagtcggagtactctgtggggtccgaagat
gaggacgaagattttgaagagaggcctgaaggtggacgtagacagtctcgtcgacagctg
aagaatgagaaagacaaacctcttccccccttactggcacgtgttggaggaagtatagag
gtccttgggttcaacactcgccagaggaaagctttcctcaatgccatcatgcgctggggc
atgcctcctcaggatgcttttaactcccactggctggttcgagacctgagagggaagagt
gagcgcgagttcagggcctatgtgtctctgtttatgagacatttatgtgagccaggtgca
gacggagcggagacctttgcggatggagtcccccgtgagggcctgtctcgacagcatgtt
ctcaccaggatcggagtcatgtcgcttgtcaggaaaaaggtgcaggagtttgaacacgta
aatgggaagctgagctctccagatctgattcccattggaatggagctgaagaaactgact
gagagtgtctcttctgatcccaacaccccggtaccagccagccctgttgctacgcagccc
agcacccccatcccaccagagaaggcagagtctttgttacgaaatgctgaagacaaagag
acgacagagacagatggaaggaaaccatctaagcaagaacaggttcccagtgctgaagta
gcatctgtacccgagaaggctgctgacagtgacgagaccaaggcaacctcagaagagaaa
actggagatgagacgaacagaaccaaatcccccatgacaaaggccgagccacctgcctac
ccaaaagagtctgctttcaagcaggcagagctgccatctagtcatacctcacctaagacg
gacccctgcaaagaagctgagaagtcctcagaaaagggagaggctggctctcctctggaa
aaaactgaagacaaagaaaataagccagatgatgtgaagagtgaagatgcattagagggt
cgattgaacggagacaaagactctctggatgagctggatgagagcagaaaagaggacaaa
aatggattcaaagccaagttcatgtttaatattgcagatggaggttttactgagttgcac
accctgtggcaaacagaggagcgagcggctctttcgtctggaaaaatgcatgacatctgg
catcgtcgccatgactactggctgctggctggcatcgtaacacatggctacgctcgctgg
caagacattcaaaatgatccccgttatgcgattctgaatgagcccttcaaaacagagatg
cataaaggcaactacttggagatgaagaacaagttcctggcgaggcgcttcaagttgtta
gaacaggctttggtgattgaggagcagctgcgacgggcagcttacctcaatatgacccag
gaccctagtcaccctgctatggctctcaacacacgctttgctgaggtggaatgtttggcc
gagtcccaccaacacctctccaaagagtctctggctgggaacaagcctgcaaatgctgtg
cttcacaaagtgctgaaccagctggaggaacttctgagtgacatgaaagcagatgtgaca
cgacttcccaacatgctgtccagaatcccgcctgtgtcggctcgtttgcaaatgtcggag
agaagcatcctgagccgccttaccagcagaggcaacgaacctccaccacagcagcctttt
agccagggaggtttcagctgttcccagatgtacagcagtggttttggtggaggattcaga
ggaccaggcgggcagcctatggtcaactacagccagatgccactcggaccttatgtcagc
gtgtcatctaatggccccccaccccctacaagccatttggacaagaaatcacttgactcg
ttcagagacggggctacgcctgagctcaagtcaggcaaagcaagtgatgtcatctgtatt
gaggactag
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integrated database retrieval system
