Cyprinodon variegatus (sheepshead minnow): 107085190
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Entry
107085190 CDS
T06110
Name
(RefSeq) RNA exonuclease 1 homolog
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
107085190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cvg03009
]
107085190
Ribosome biogenesis [BR:
cvg03009
]
Eukaryotic type
Pre-60S particles
RNases
107085190
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
KIX_2
Motif
Other DBs
NCBI-GeneID:
107085190
NCBI-ProteinID:
XP_015230879
LinkDB
All DBs
Position
Unknown
AA seq
1145 aa
AA seq
DB search
MFPSSGLFININCPFSRHGLCERPHCLYKHATEARGTFGGVSKSPTAELTGQTGNLYGNR
FRPVNADSLHELQRLEKEIETARHEVEQEQRRLSCYQTNWADRSGNKPPTKCEASVSCGL
PSSKGHKSSVQAMKYVVDSSKPRTDLEYDPLSNFSAALRSYSSSGKVKNRQDGRSSRSVE
KPTTHQAQLNRPSSPPDLDDSFEDGVLVIDVSLSPDKTSDQTPNAAADVASETSSEGTER
ARKEIKTHNVLLDSSPQKITPQVVNAAWSSTASNNVNKEPDCCLIESNPVSSASEKAKDY
SNDSSGFNLTGCLVELERGRENPGLRSPEMPTKKNESQSFSTTSDHLGNPHNKLISNTGK
YNPQPHCSLFRKQPDPDSAKQALVTEVQSHVPYTQSAQSDAAAREKTAEKTNLQQADGGP
GNSQIWSPDVASVNPHGRADSSDLTEQLHQEEDEAVIVINSSAEEDELDYSEMELSDSDP
MEECYRIFMEANGEERGNEEQGSTSMTVVMDVEKPEVKAAGQSFTGKKRVAHEAKNLEQP
LAKMRPQPQVLVPLREPSAAGLNSRATVASKTQQLQHRASIPSVPVKIAQNILSSGSQKK
DTQMAASASTLKNLQPSPTPNACVNFIPIGTAVIEVGNNVHLILPQGSFPLSVSSASSPV
TSVLTPVSRVHPNPGTLKQTSAPAAVTPLPRHRSTVPVLIAAPARRPALGSALASTSVQA
AVGASTTSQAAGQAAVKPLPVKRKLKQQSETAKEKVPHDVRQRYVNMFTEEFLKTTADVN
EAFEKALTEEKSVYNRSVNKLKYLSIAVNALKRLKNQSASAKNEKQVQNQKPKGNIPFIR
KKMKENAGDMVLYEIFKGYTLTDEQMIENNYPIQHPEKASSAVLFSEKKVSTDPLKRICC
RCGATYAVNQTGKHLRKEECNYHYGKGVTNRVPGGVETRYSCCQGVMGAPGCQMFKLHVH
DFLSLDGFVSTAPRCPSDMSCPGVYSLDCEMCYTVQGLELSRVTVINSNLQVVYDTFVRP
DNEVIDYNTRFSGISEEDVKGNHPSLREVQETLLSFISADTILVGHGLETDLCLLKLLHG
LVVDTSVVFPHRLGPPNKLSLNSLTAEYLRRIIQESVCGHDTEEDASACMELMLWKMKED
GKLKK
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgtttccatcctctggtctttttattaatataaactgccccttttcacgacacgggctc
tgtgagagacctcattgtttgtacaaacatgccacagaagcgagggggacgtttggtggc
gtgtctaaatcacccacagcggagctaacagggcaaacaggaaatctgtatggcaaccgc
ttcagaccagtaaacgcagactccctgcatgagctgcaaagactggaaaaggagattgaa
actgcaaggcacgaagtggaacaggagcagcgccgcctctcatgctatcagaccaactgg
gcggacagaagtggcaataaacctccaacaaaatgtgaggccagcgtttcctgtggactt
ccttcaagcaaaggacataaatccagtgtgcaggcaatgaagtatgtggtggacagctca
aagccaaggactgatttagagtatgatccactctccaacttttctgccgccttgcggtct
tacagctcatcaggaaaagtgaaaaaccgacaagacggaaggagctcgagatctgtggag
aagccgactactcatcaagcccagctcaaccgaccttcatctccgccagaccttgatgac
tcttttgaagatggtgtccttgttattgatgtttctttatctccagacaaaactagtgat
caaactccaaatgccgccgctgacgtggcatcagagacatcctccgagggaacagagaga
gccaggaaggagattaaaacccataatgttcttcttgattcctcaccgcagaaaataact
cctcaggtggtaaatgctgcttggtcatccaccgccagcaacaatgtaaacaaagagcct
gattgttgtctaatagagagcaatccagtctcatctgcttctgaaaaagccaaagattac
agcaatgatagtagtgggtttaatttaaccggatgtctagtagaacttgaaagaggacgt
gaaaaccctggtctacggtcacctgagatgccaaccaaaaaaaatgaatcccaaagtttt
tccaccacctcagatcacttgggtaaccctcacaataaactgatctctaatactgggaaa
tataatccacagccgcattgttccctttttcgtaagcaaccagatccagattcagccaag
caagccttggtgacagaggttcagagccacgtcccttatacgcaaagcgcgcagtcggac
gctgcagctcgtgaaaaaacggcagagaaaacaaacctgcagcaagcagatggaggacca
ggcaatagccagatctggtctcctgatgttgcatcagtaaatccccatggcagagctgat
tcatctgacctcacagaacagcttcaccaggaggaggatgaagcagtgatagtaataaac
tccagcgctgaggaggacgagctggattactcagagatggagctgtctgatagcgacccg
atggaggaatgctacaggatcttcatggaggcaaatggcgaggaaagaggaaacgaggag
cagggtagcacttctatgacggttgtcatggatgttgagaaaccagaggttaaagctgca
ggccagagtttcacagggaaaaagagagttgctcatgaagctaagaacctagagcagccg
ctggctaagatgagacctcagcctcaggttctggttcctctgcgggagccgtcggctgca
gggttgaactcccgggctaccgtcgcttctaagacccagcagcttcagcacagagcctcg
ataccgtctgtcccggttaaaatcgctcagaatattctgtcttctgggagccagaaaaaa
gacacacagatggcagcttcagcttcaaccctgaaaaaccttcagccttccccgacgcca
aatgcttgtgtgaacttcatccccattggaactgcagtcattgaagtgggaaacaacgtg
cacctgatcctcccacagggcagcttccctctctccgtctcctccgcttccagcccagtt
acttctgtgctgactccagtgagccgggttcatccaaaccctggcacactcaaacaaact
agcgctcctgctgcagtgactcctttgccaagacatcgctccactgtgcctgtgctcatt
gctgctccagcgcgacgacctgcactcggctctgctttggcatcgacctctgtgcaggca
gcagttggagcctccacgacttctcaagctgctggccaagcagctgttaagcctctgcca
gtgaaaaggaagctgaagcagcaaagtgaaacggcaaaagagaaagttccccacgatgtc
cgtcagcggtacgtgaacatgttcacagaggagttccttaaaaccacagctgatgtcaat
gaggcttttgagaaggccctaactgaggagaagagcgtgtacaaccgcagcgtcaacaaa
ctcaaatatctcagcattgcagtgaacgccctcaaaagactgaagaaccaaagtgcttct
gctaaaaatgaaaaacaggtccagaatcaaaaaccaaaaggcaacatcccatttatccga
aaaaagatgaaagaaaatgcaggtgatatggtgttgtatgaaattttcaagggttatact
ttgactgatgaacaaatgatagaaaacaactatcctatccagcacccagaaaaagcaagt
tctgctgttcttttttctgagaagaaagtgagcacagacccccttaaaaggatctgctgt
cgatgcggggccacgtacgctgtcaatcaaacaggcaaacacctccgaaaagaggagtgc
aactaccactatgggaaaggagttaccaacagagttccagggggagtggaaactcgctac
agctgctgtcagggagtcatgggagctcctggatgtcaaatgtttaagttgcatgtccat
gattttctcagcttggatgggtttgtatctactgcacccagatgtccctcagacatgagc
tgtcctggagtttattccctggattgtgaaatgtgttacactgttcaagggctggagctg
tccagagtgacggtgatcaactccaaccttcaggtcgtctacgacacctttgtcagacct
gataatgaggtcatcgactataacaccaggttttcaggaatcagtgaggaagatgtgaaa
ggtaaccatccctccctcagggaggtccaggagactttgttgagcttcatcagtgcagac
actattctggttggacatggcctggaaacagacctttgtttactcaagttgcttcatggg
ttggtggtagacacttcggtggtcttccctcatcgtctaggaccacctaacaagctgagc
ctcaacagtctcacagctgaatacctcaggaggattattcaagagagtgtttgtggccac
gacactgaggaagatgcatctgcctgcatggagcttatgctgtggaagatgaaagaagat
gggaaactgaaaaaatga
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integrated database retrieval system
