Cyprinodon variegatus (sheepshead minnow): 107085521
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Entry
107085521 CDS
T06110
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
107085521 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvg03400
]
107085521 (msh2)
DNA repair and recombination proteins [BR:
cvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
107085521 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Motif
Other DBs
NCBI-GeneID:
107085521
NCBI-ProteinID:
XP_015231368
Ensembl:
ENSCVAG00000005802
UniProt:
A0A3Q2CH52
LinkDB
All DBs
Position
Unknown
AA seq
937 aa
AA seq
DB search
MAVQPKQNQNLSLDSAAETGFLNFIFSMKEKPDTTFRIFDRNDYYTVHGKDAIFAAKEVF
KTNGVIKYLGSGTRKLESVILSKLNFEAFVKDLLLVRQYRVEVYRNHSKSSKEHDWRIEY
KASPGNLTQFEDILFGGGTGGEGCAGVVAVRFATGADGQRVVGVGYVDAAQRTMGVCEFP
DNEIFSNLESLLVQISPKECLLAQGECSSDVNKLREVVQRGGVLVSDRKRAEFNSKDIVQ
DLNRLLRSKRGDTVASNTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTTLELGQY
MRLDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKAKIEER
LDLVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRHTATLQDCYRVYQAVSHIPALVS
ALERYSGSYKVLLLAVFASPLADLQTDFIKYQEMIETTLDMNQIEHHEFLVKASFDPVLS
ELREKMDALEKSMQAVLSGAARELGLEAGKTVKLESNAVHGFYLRVTCKEEKSLRNNKKF
TTLDVQKNGVRFTNSKLSSLNEEYTRSREEYEEAQNAIVKEIINIASGYVDPLQTLSDVI
AQLDAVVSFAVASVSAPVPYVRPRLLDDGCRRLELLQARHPCMETDADTAFIPNDIIFVQ
GEKSFYIITGPNMGGKSTFIRQVGLIALMAQIGCFVPCEKAELSVIDSVLARVGAGDSQV
KGVSTFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHIASKIGCFCL
FATHFHELTALAAQQPTVHNLHVTALTSHNTLTMLYRVKPGVCDQSFGIHVAELACFPQS
VLAVARDKAEELEEFQEPVGDDPNQAEEPEAKRRRTEKQVGENLIQDFLLKVKALPVATM
SEEEVKAEIKRLKDDLVSKNNTHITEILARCAPVKTA
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaagcaaaaccagaacctgtctctggacagcgcggccgaaaccggc
tttctgaatttcattttttccatgaaggagaaacctgacacaactttcaggatattcgac
cgaaacgactactacaccgtccacggaaaggacgccatatttgcggccaaggaggttttt
aagactaacggagtcatcaaatatctgggttcagggactcgcaagctggagagcgtgatc
ctgagcaagctgaactttgaggcctttgtgaaggacctgttgttggtgaggcagtacaga
gtagaggtctacaggaatcacagcaagagcagcaaggagcatgactggaggatcgagtac
aaggcctctcctggaaacctgacccagttcgaggatattctgttcggtggtggaaccggg
ggggagggctgcgcgggagtggttgccgtgcgcttcgcgacgggagccgatggccagcga
gtggtcggcgtcggctatgttgacgcggctcagaggaccatgggggtgtgcgagtttcca
gacaatgagatcttctccaacctggagtccctgcttgtccagatcagtcccaaagagtgt
ctcctggctcagggtgaatgcagcagcgatgtgaacaagctgcgggaggtggtccaacgt
ggcggtgtgctggtctccgacagaaagagagctgagtttaacagcaaggatatcgtccag
gaccttaacaggctgctgagatctaagaggggagatactgtggcgagcaacacgctgccc
gaactggacaagcaggttgccatgtcttgcttggctgcggtggtgcgattcctcgagctc
ctctctgatgagtccaactttaactccttcagcctcaccacgctggagctgggtcagtac
atgcggctggacaacgccgccgtcagggctctcaaccttttccagggttcgcctgacgac
accagtggagcgcattcattggctggtttgttgaacaagtgtcgtacgcctcagggtcag
cggctggtcaaccagtggatcaaacagccacttatggacaaagctaagatagaggaaaga
ctagacctcgtggagagttttgtgtgcgactcagagctgaggcagacttgtcaggaggat
cttctgcgacggttcccagaccttcaccgcctggccaaaaagtttcaccgccacacagcc
acactgcaggactgctatcgcgtctaccaggctgtgagtcacattcctgctctcgtctca
gccttggagagatactcaggcagctacaaggtgcttctcctcgccgtgttcgcctcgcct
ctcgcagacctgcagacagattttatcaagtaccaggagatgattgaaaccactctggac
atgaatcagattgagcaccacgagttcctggttaaagcctcatttgatcctgtcctgagc
gagctcagagagaagatggacgcactggagaaaagcatgcaggctgtactaagcggagca
gccagagaattaggcctggaagctggaaagaccgtgaagctggagtctaacgctgtgcat
ggcttctacctgagagtcacttgcaaggaagagaagagtctaaggaacaacaagaagttc
accaccctggatgttcagaaaaatggagttcgcttcacaaacagcaagctaagctctctg
aatgaggaatacaccaggagcagagaggagtacgaggaggcccagaacgccattgtcaaa
gagatcatcaacatcgcctcaggttacgtggatcctcttcaaacgttgagtgacgtcatc
gcacagctggacgccgtggtgagctttgccgtggcctcggtgtctgctccggtgccgtac
gtgcggccccgactcctggatgacggctgcaggcgcctggagctgctgcaggccagacat
ccttgcatggagacagatgcagataccgctttcatacccaatgacatcatattcgttcag
ggggagaagagcttttatattataacagggccaaatatgggtggaaagtctacctttatc
cggcaggtgggtttgatcgcactgatggctcagatcggctgctttgtgccatgtgagaag
gcggagctcagtgtgattgacagcgtcctggccagagtgggagcaggagacagccaggtg
aagggagtgtccaccttcatgtctgagatgttggaaactgctgccatcctgcggtctgcc
acggaaaactccctcatcattatcgacgagctcggccgtggaacctctacgtacgacggc
tttgggctggcctgggccatcagtgaacacatcgcctccaaaatcggctgcttctgcctc
ttcgcaacgcacttccacgagctgacggccctggcagcgcagcagccgaccgtccacaat
ctgcacgtcaccgccctgacgtcccacaacacgctaacaatgctctacagagtcaaacca
ggtgtttgtgaccagagttttgggatccacgttgctgagctggcttgcttccctcagtca
gtgctggcggtggcaagggacaaggcggaggagctggaggagttccaggaaccagtaggg
gatgatccaaaccaggcggaagagccagaggccaagaggagacgaactgagaagcaggtg
ggagaaaatctgatccaggactttctgctgaaggttaaggcactccctgttgctaccatg
tctgaggaggaggtgaaagcggaaatcaagagattaaaggatgatttggtgtccaaaaac
aacacgcacataactgagatactcgctcgctgcgctcctgtgaaaactgcctga
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