Cyprinodon variegatus (sheepshead minnow): 107085664
Help
Entry
107085664 CDS
T06110
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107085664 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107085664 (clp1)
Enzymes [BR:
cvg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
107085664 (clp1)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107085664 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
AAA_18
ATP_bind_1
MMR_HSR1
TniB
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
107085664
NCBI-ProteinID:
XP_015231623
Ensembl:
ENSCVAG00000020101
UniProt:
A0A3Q2DD95
LinkDB
All DBs
Position
Unknown
AA seq
441 aa
AA seq
DB search
MAAEGVEKASEDATSSGKVCTRFDLEKETELRFEVEAGEAAEQVELELLTGMAEVFGSEL
NRNRKYTFGAGSKIAVFTWHGCSVNLFGKPEVAYVSKDTPMLLYLNTHAALEQMRKQAER
ENERGPRVMVVGPTDVGKSTVCRLLLSYAVRVGRRPTLVELDVGQSGVSVPGTVSALCIE
RPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVGGCIIN
TCGWVKGSGYQALVHCASTFQVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERS
KECRRDARDEKIREYFYGFRGLSFFPFSFEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTYHVLSVSSVDDGDEDARKSIVESPVCGFIVVTNVDTQAQVMKVLSP
APRPLPRHTLLIMDIRFMDMK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggagggggtggaaaaagccagcgaggatgctacctcttctgggaaggtgtgc
actaggttcgacttggagaaggagaccgaacttcgtttcgaggtggaggccggggaggcc
gcggagcaggtggagctggagctcctgacggggatggctgaggtgtttgggtccgagttg
aacagaaacaggaagtacacctttggagcaggatccaagatcgcagttttcacctggcac
ggctgcagtgtgaatctttttgggaagccagaggtggcctatgtgtccaaggatactcct
atgctgctttaccttaacactcatgctgccctggaacagatgagaaaacaggcagagcgg
gaaaatgaaagaggtcccagagtgatggtggtgggacctacagacgttgggaagtccact
gtgtgccgactgcttctcagctacgctgtgagagttggaaggagaccgacactggtggag
ctggatgtcggacagagtggggtttctgttccagggactgtatcagctctgtgtatcgag
cgtccggcagatgtggaggagggcttctctgtccaggctcctttggtgtatcactttggt
tctactactcccggaaccaacatcaaactttacaacaaactgacatcatgcctggcagag
gttttctctcagcgctgcgaggtaaacaggaaggccagcgttggaggctgcatcatcaac
acttgcggctgggtgaagggttctgggtaccaagctctggttcactgcgcctccaccttc
caggtggatgtggtgcttgtgctcgaccacgaaagactctacaatgaactgaaaagggac
ctgcctcactttgtgcgcgttgtcctgctgccaaagtccggaggagtggtggaacgctcc
aaagagtgccggcgggacgctcgggatgaaaagatccgcgagtatttctatggcttccgt
ggactgtccttcttccctttctccttcgaggtgcggttttcggatgtccgcatctataag
atcggggcgccgtccatcccggactcgtgcttgccgctgggaatgtctcaggacgacacg
cagctgaagctggtgccggtgactccggggagggacctgacatatcacgtgctgagtgtg
agcagtgtcgatgacggggatgaagatgccagaaagagcatcgtggagagccctgtgtgt
gggttcattgtggtgacgaatgttgacactcaggctcaggtaatgaaggtgctgtcgcct
gcacccagacctctgcccagacacactctgctcatcatggacatccgatttatggacatg
aaataa
DBGET
integrated database retrieval system
