Cyprinodon variegatus (sheepshead minnow): 107085682
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Entry
107085682 CDS
T06110
Name
(RefSeq) protocadherin-11 X-linked-like isoform X1
KO
K16498
protocadherin delta 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
107085682
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cvg01009
]
107085682
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cvg04515
]
107085682
Protein phosphatases and associated proteins [BR:
cvg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107085682
Cell adhesion molecules [BR:
cvg04515
]
Cadherins
Protocadherins
107085682
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
TMEM154
DUF6249
Motif
Other DBs
NCBI-GeneID:
107085682
NCBI-ProteinID:
XP_015231641
Ensembl:
ENSCVAG00000021320
LinkDB
All DBs
Position
Unknown
AA seq
1317 aa
AA seq
DB search
MNLASQVHVLVALLACLVSLCKAQERDYIVKEEQPENVRIGNLRKDLDLNLDPTIRLSSP
LQFKPVYKTGDVPLVRVEANTGEIFTTNHRIDREKLCSGVFTEKRCYYEIEVAVLPDEIF
RLVKIRFLIEDVNDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYELVK
SVNEFGLDIIETPEGDKWPQLIVQQNLDREQKDTFVMKIKVEDGGSPPKSSTAILQVTIS
DVNDNRPIFRDNELEVEVPENAQMGTSVAQLHATDADLGSNAQVHFSFSNQISSSTKRHF
AINSSTGLITVKQPLDREVTPVHKLIVLASDGSSTPSRATVTVNVTDVNDNVPSIDTRYI
INLVNGTVLLSENAPLNTKIALITVTDKDADLYGKVACYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIKIVASDRGTPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPENND
PSTQLIKISATDADSGHNAEIIYTLGPDAPDGFNIDRRSGILSVGKRLDREKQERYSFTV
MARDNGSAPLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDADAG
DNAVITLSVLNGKDNFIIDPQTGVIKPNITFDREQQSSYTFMVKAVDAGQPPSSSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVRTTTTPGSVVTRVFAIDNDTGMNAELQYSIISSII
VTSRVSPRGLFSIDKTTGNITLQEKIVLADVGLHRLVVKVKDLGQPESLHAIALVHLFVN
DTVSNSTFIQEQLRKSMETPLDRNIGDNEITPQANGYVIVVIAIIAGTMTVILVIFVTAL
VRCRQTPRHKVVQKGKQSGEWVSPNQENRQIKKKKKRKKRSPKSLLLNFVTIDESKPEDP
THEHVNGTLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPV
APKKHHVIQELPLDNTFVVGCDSLSKCSSTSSDPYSVSECGCQGGFKTSGQIATRQNPGQ
TPEKSFNSTSPICKSQDLNPVEHLWDVVERDICIRDMQPTNQQQLCDEACQLGKITSVNL
DYLVRNIRNHSSNWDFSNNYLLQTQRRVTFHLPDGSQESCSDSGLGDADPSSTASATQPL
PLSFPREEYYEQTSPNSRTEGDGNSDPESTIEVNLKKALAEASETCTQECLILGHSDSCW
MPPTLAHFQSPGTNSPTSTPTTTISAAALPSFGFQGVKANIGGMGVMDGRHTLGRSVPKR
DELDKGFSRPQFYNTLDRHCSSKKEDPVKVIPLASFSSPGQHTPTGGSSSFLNEHQL
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
atgaacttggcaagtcaggtgcatgttctggtggccttgctcgcctgtttggtctcatta
tgcaaggcccaggagagggactacatcgtgaaggaggagcagccagagaacgttcggatt
ggaaatctgcgcaaggacctcgaccttaacctggacccgaccatcaggctgtcctctccg
ctgcagttcaagcctgtttataagacaggtgacgtgcctttggtgagggtggaggccaac
acgggggagattttcaccaccaatcacaggattgaccgggagaagctgtgctcgggggtc
ttcacggagaaacgctgctactatgagatcgaggtggcagtactgcccgatgagatcttt
cggctggttaagatccggttcctgattgaggatgtgaacgacaatgcaccccttttccag
tccactgtcataaacatctccatccctgagaacacagctattaacacccgctacccggtg
ccatcagcatttgaccctgatgtagggatcaatgggatccaacactatgagctggtcaag
agtgtcaatgagtttggcttagacatcattgaaacccctgaaggtgacaagtggccccag
ctcattgttcagcagaaccttgatcgggagcaaaaagacacctttgtgatgaagatcaag
gtggaggatggtggcagcccccctaaatctagcactgctattctccaagtaaccatttct
gatgtcaatgacaatcgtcctatcttcagggacaatgaattggaagtagaagttccagag
aacgctcagatggggacttcagtggctcagcttcatgcaacagatgcagacctaggatcc
aatgcacaggtccacttttcattcagcaaccagatctcctcatcaaccaagcgtcacttt
gccatcaatagttctactggactaataactgtaaagcaacctctagaccgagaggttact
cctgttcataaactcattgttctcgcaagtgatggcagctcaaccccatcaagagccaca
gtgactgtcaatgtcacagatgttaatgacaatgttccttccatagacactcgctacatt
atcaacctggtaaatgggactgtcctactgtctgagaatgctcctttgaacaccaaaata
gcccttattaccgttactgacaaggatgcagatttgtacggaaaagtggcttgctacact
gaccatgatgttcctttccggctaaagcctgtatttaatgatcaattcctactggagaca
gctgcccctctagattatgagaccactcgtgaatacgctattaagatagtggcttcagac
agaggaacgcctcctttgaacacttcagctatggtcttaattaaaatcaaggatgagaat
gacaacgcaccaattttcccccagccggaaattcaactttcaataccagagaacaatgat
ccctcaactcagttaataaaaatcagtgccactgatgcagatagtggacataatgctgag
atcatttatactcttggccctgatgcaccggacgggtttaacatagacaggcgctcagga
attctctctgtagggaagcgactggacagagagaagcaagagaggtactcattcactgtc
atggcaagagacaatggctcagcacccctgcagagtaatgtcactgttaggctaattgtg
caggaccttaatgacaacagcccagctttcacacaccctgaatacaacttctatgtgcct
gagaacctgcctctctatgggacagtaggcttgatcacagtgacagatgcggacgctgga
gataatgctgtcattactttgtctgttttgaatggcaaagataattttatcattgacccc
caaactggtgtgatcaaaccaaacatcacctttgacagggagcagcaaagctcctataca
ttcatggtcaaggcagttgatgcagggcagccaccaagttcctcctatgctaaggtcaca
attaatgttgtcgatgtgaatgacaatcgccctgtgtttgtcatcccatcctccaattat
tcatatgacctggtgcgaaccaccaccacaccaggttctgtggtcacaagagtgtttgcc
attgacaatgacacaggtatgaatgctgagttacagtacagtatcatcagcagcatcatt
gtcacatctagggtctcccctcgaggtctcttttccatcgacaaaacaacgggtaacata
actctgcaggagaaaatagtattggctgatgtgggactgcataggctggtggtcaaggtc
aaagatttaggccagcctgagtctttacatgctattgcacttgtgcacttgtttgtcaat
gacactgtgtcaaattccacatttatccaagagcagctgcggaaaagtatggaaacacca
ttggatcgtaacataggggacaatgagataacgcctcaagccaatggatatgtgattgtt
gttatagcaattattgcagggaccatgactgttattttggtcatatttgtcactgccctg
gtgcgctgccgacaaacacctagacataaagtagttcagaaaggcaagcagagtggggag
tgggtgtcacccaaccaagaaaaccgtcaaatcaaaaagaagaagaagagaaagaagcgg
tctcctaaaagccttctcttgaactttgtgactatagatgagtcaaagcctgaagacccc
acacatgagcatgttaatggtactctggatcttccggtggagctagaggagcagaccatg
ggaaagtacaattgggcgaccacacctacgaccttcaaacctgacagcccagatttagcc
aagcattataaatctgcatcccctcagcccacatttcaaatcaaaccagaaactccagtg
gcccctaagaagcaccatgtgatccaggagctccccttggacaatacgtttgtggtgggc
tgtgactcactctccaagtgttcatcaactagttccgacccatacagtgtctcagagtgc
ggctgtcaggggggattcaagacttcagggcaaatcgccacccggcagaacccgggccag
acaccagaaaagtcttttaactctacatcacctatttgtaagtcgcaagacctcaatcca
gtagagcacctctgggatgtggtggaacgggacatatgcatcagggatatgcagccgaca
aatcagcagcagctgtgtgatgaggcctgtcaacttggaaagataacctctgtaaatctt
gactatctggtgagaaatatcagaaatcattcttcaaactgggatttttcaaacaactat
ctactgcagacccagcgccgtgtgaccttccatcttccagatggatcccaggaaagttgc
agtgacagcgggctgggggacgcggatcccagcagcacagccagcgccacccagcctctc
cccttgagcttcccccgagaagaatactatgagcaaacgtcaccgaacagtcgcaccgag
ggagacggaaattcagaccctgaatctaccattgaggttaatttgaagaaagctctcgct
gaggcttcagagacctgcacccaggagtgtctaatactgggccactctgacagctgctgg
atgcccccaaccctggcccacttccaaagccctggaaccaacagccccacctctacccct
actaccaccatcagcgccgcagcactcccatcctttggctttcagggagtaaaagccaac
ataggcggcatgggggtcatggatggccgccacactctgggcaggtctgtgcccaaaaga
gatgaactagacaaagggttcagcaggccacagttctacaacaccctagacagacactgc
agcagtaaaaaggaggacccagtcaaggtcattccactggcaagcttctcctctcctggg
cagcacactcctactggtggcagcagttctttcttaaatgagcaccagctgtaa
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integrated database retrieval system
