Cyprinodon variegatus (sheepshead minnow): 107085720
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Entry
107085720 CDS
T06110
Name
(RefSeq) protocadherin-7-like
KO
K16498
protocadherin delta 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03273
Virion - Lassa virus and SFTS virus
cvg04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
107085720
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
107085720
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cvg01009
]
107085720
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cvg04515
]
107085720
Protein phosphatases and associated proteins [BR:
cvg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107085720
Cell adhesion molecules [BR:
cvg04515
]
Cadherins
Protocadherins
107085720
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_FAT4_N
Ig_CLSTN
Cadherin_2
Ig_Cad99C_N
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
107085720
NCBI-ProteinID:
XP_015231699
Ensembl:
ENSCVAG00000020074
UniProt:
A0A3Q2DDU5
LinkDB
All DBs
Position
Unknown
AA seq
1367 aa
AA seq
DB search
MPRLGAVHFVVLLLQLLTQLPAADSALRYRVAEEGPPDVRIGSVATDLGLTAGTGSGDVT
FALESGSEYFKIDNVTGELTTGPRRIDREKLPQCQMIFDENDCFLDFEVSVIGPLQSWVD
LFEGRVVITDINDNTPSFPSPVLQLSVEENRPIGTLYLLPTATDRDFGRNGIDRYELIQD
NGAGSSSTRRTVGGNPITRVDGLDRRGRSGDSGGGARSTVFELQVADIPDGEKQPQLIVK
GTLDREQKDSYELILKVRDGGNPPRSSQALLRVSITDVNDNSPQFERSTYEAEMTENAPP
GTPVLQVRASDRDIGVNGQVEYVFGAATENVRRLLRLDEATGWLSVLHRIDREEVAQLKF
TVMARDRGQPPRTDRTTVVLAVRDENDNVPVVEIRKIGRILVRDGAALVPENVLVDTPVA
LVQVSDRDQGENGAVTCTVVGDVPFTLKPAGETLLPPPPADEAFDRNKKKYFLHTSALLD
YEATKEYSVTIVAVDSGSPSLSSNSSLMVRVVDINDHAPIFAQSNVEVHFAENNGPGERV
VTVVATDADSGKNAEIAYSLDPGSNGPFYIDADNGDIRATGTLDREQQERYELRVIAKDK
GTPSLQGSATVLVQVTDRNDNAPKFVQEIFTFYVKENLLANSPVGMVTVTDADEGENAEL
SLFVEVDGVGADTKTTGEKVEGEDGGNEQEELFSIENNTGTIFSAASFDREKLSTYTFRV
RAVDGGEPRKTATATVSLFVTDENDNAPSITSPANESYTLLPPASSARTIVRTVTAIDSD
TGPNAELHYALVGGNPFRLFEIGQTNGVITLAEPLERRHRGLHRLVVRVNDSGIPSLCAT
ALVHVFINESLANATLVDAQVARSLMAPLSLDIAGDPDSERAFGKQRLSVAIGILAGAAA
VILVILLVVTARQCGAQGKNGYEAGKKEPEEDFFSPSGAQPQASRGSGSDRGRKPRRDKR
GGGSGSTVGGVGKSDRSLYSGIVTVNGLRRHVNDDDDEELSSASERLAARYCAMEGDPGS
PRMGGGRRHQSSPDLARHYKSSSPLPAVNLQPHSPPAEGKKHQAVQELPPSNTFVGSGGC
VGSAGSSSSSTGGSGNADAMSLGSDQCSDYSCQAANKYSKQGTLRRVTFSVVSQPQDGGC
YDSGLEDSETPSSKSSSGPRLGALPLPEEGYERTTPEGSVGEEDHVENDARQLPDVALTG
KCTRECDEFGHSDTCWMPVRPSPRQRQRHGSDPPRLSTFAPGDDNNNLRGNDRESDSESA
GSAGSSEAGVMVGGEGQRLPMVNGDPLGTLGRGDRNRNMGDHNRNLLNRKMTSASYDTFS
GAGLGRRQPEEEGGEGQNPPEVIPLARTGGDYKTTSCLTLSRREVYL
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgccgcggcttggtgcagtgcactttgtggtgttgctgctgcagctgctgactcagcta
ccggctgcagactcagctctccggtaccgggtggcggaggagggcccgccggatgtcaga
atcggcagcgtggccaccgatctgggcctcacagcgggcaccggcagcggggatgtcacc
ttcgccctggagagcggctctgagtacttcaagattgacaacgtgacaggtgagctgacc
acaggcccgcgacgcatagaccgagagaagctcccacagtgtcagatgatctttgacgag
aatgactgcttcttggactttgaggtgtcagtgatcgggcctctgcagagctgggtagat
ctgtttgaaggcagagttgtcatcacagacatcaatgacaacacgccttccttcccctca
cctgtcctgcagctctctgtggaggaaaaccgccccattggcactctgtacctgctccca
actgccactgacagggattttgggcggaatggcattgatcgctacgagcttatccaagat
aatggagctgggtcaagttcaacaaggcgcacagtaggaggaaaccccattactagagtg
gatggacttgaccgcaggggcagaagtggtgatagtggaggaggagctaggagcactgtg
tttgagctgcaagtagcggacataccagatggtgagaagcagcctcagctcatcgtgaag
ggcacactggatcgagagcagaaggactcatatgagctgatcctcaaagttcgagatgga
ggaaacccacctcgttcctctcaggctctgctccgggtttctatcactgatgtgaatgac
aacagcccacagtttgagaggtccacatatgaagctgagatgactgaaaatgctcctcct
ggtacacctgttctccaggtcagagcttctgatcgagacatcggagtgaatgggcaggtg
gagtacgtttttggagctgccactgagaatgtcaggcgacttctgcgcctggatgaggcc
actggttggctgagcgttcttcacaggattgacagggaggaggtggcgcagctgaagttc
acagtgatggccagggaccggggtcagcctccccggactgaccgcaccacagtggttttg
gctgtgcgggatgaaaacgacaatgttccagttgtagagatcagaaagatcgggcggatt
ctggtccgggatggggcggcactggtgccagagaatgttctggtggacacacctgtagct
ctcgttcaggtgtctgaccgggaccagggggagaatggggcggtgacctgcacggtcgta
ggagatgtcccatttactctgaagccagccggcgaaacgctcctcccacccccacctgca
gatgaagcctttgacagaaacaagaagaagtatttcttacatacgtcagccttgctggat
tatgaggccacaaaagagtacagtgtaaccattgttgcagtagattctggcagtcccagt
ctatccagtaacagctcattgatggtgcgggtggtagacatcaacgatcatgccccaatc
tttgcccagagcaatgtggaggtccactttgctgaaaataatggacctggtgaaagggtg
gtcactgttgtagctacagatgcagacagtggaaaaaatgctgaaattgcatattccttg
gatcctgggtctaacggacctttttacatagatgcagataatggtgatatcagagctaca
gggaccctggaccgggaacaacaagaaaggtatgagttgagagtaattgcgaaggacaaa
ggaacaccttctttgcaaggctctgcaactgttcttgtacaggtaactgatcgcaatgac
aatgcaccaaagtttgttcaagagatcttcacattctatgtgaaggagaacctacttgcc
aacagtcccgtcggcatggtaacagtcactgatgctgacgaaggtgaaaatgctgagctt
agcctctttgttgaggtagatggggttggggcagacacaaagacaacaggggaaaaagtg
gaaggagaagatggcggaaacgagcaagaagagctattctccattgagaacaacaccgga
acaatcttttcagctgcatcctttgaccgtgaaaagctttccacctacaccttccgcgtt
agggccgtggatggaggggagccacgcaaaactgccaccgccactgtctccctatttgtg
acagatgaaaacgacaatgcgccttcaataacctctcctgccaatgaatcctacacactc
ctaccacctgccagcagtgcccgcaccattgtcaggactgtaacagccatagactcagac
actggcccaaatgcagaactccactatgcattagtgggaggaaatccctttagacttttt
gaaattggccaaactaatggagtaatcactctggcagaacctttggagcgacgccacaga
ggtttgcatcgccttgttgtacgagtcaacgatagtggaatcccctccctttgtgcgacc
gcactggttcacgtcttcatcaatgagagtttggcaaatgccaccctagtggatgcacag
gttgcccgcagcctgatggccccgctgtctctagacattgcaggggacccagacagtgaa
cgtgcgtttggaaagcagcgcctcagtgttgcgattggcatcctcgcgggagctgcagca
gtcatcctggtgattctccttgtggtaactgccaggcagtgtggcgctcagggaaagaac
ggctatgaggctggtaaaaaagagccagaggaagacttcttcagtccttctggggctcaa
ccacaagccagcagaggcagtggttccgaccgtggtcggaaaccgcgaagagacaagcgt
ggcggaggcagtggcagtacagtcggaggtgtagggaagtcagacaggtctctatacagt
ggcatcgtcactgtcaatggcttgcgtcgccacgtcaatgatgatgatgacgaggaacta
agcagtgccagtgagcgcctagcagctcgctactgtgctatggaaggggaccccggtagc
ccaagaatgggcggcggcagaagacaccagtcaagcccagatctggccagacactacaaa
tctagttcacctctccctgcagtgaatctccagcctcattcacccccagctgagggaaag
aagcaccaggcggtccaggagcttcctccctcaaacacctttgtgggcagtggtggatgt
gtggggagtgccggctccagtagcagcagcacaggaggtagtggcaacgcagatgccatg
tccctgggatcagaccagtgctcagattacagctgccaggctgcgaacaagtacagcaaa
caggggacccttcgccgtgtgaccttctcggttgtgagccaacctcaggatggtggttgc
tatgacagtggcctagaagactctgagacaccaagcagcaagagttcgtcggggccacgg
ctgggagcccttccgcttcctgaggaaggttacgagcgcacaaccccagagggaagcgta
ggggaggaggaccatgtagagaatgatgcgagacagcttccagatgtagcactaactgga
aagtgcaccagggagtgtgatgaatttgggcactctgacacatgctggatgcccgtccgc
ccttcaccacggcaacggcagcggcatggcagcgaccctccacgcctttcaaccttcgcc
ccaggtgacgacaacaacaatctccgtggcaatgaccgtgaaagcgacagcgaaagcgcc
ggcagtgcagggagctcagaggctggagtcatggtgggaggagaaggtcagaggttacct
atggtcaatggggatccccttggcaccttgggacgtggcgaccgcaacaggaacatgggc
gaccacaaccgaaatcttctgaatcgtaaaatgacttccgcatcctacgacacattcagc
ggggcggggcttgggaggcgccagcccgaggaggagggaggagagggccagaacccacct
gaggtcataccgctggcgcggactggaggggactacaagacaacctcctgccttactttg
tctcgtcgggaggtctacctgtaa
DBGET
integrated database retrieval system
