Cyprinodon variegatus (sheepshead minnow): 107085845
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Entry
107085845 CDS
T06110
Name
(RefSeq) laminin subunit beta-1-like
KO
K05636
laminin, beta 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04510
Focal adhesion
cvg04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107085845
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107085845
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
DUF5798
Alanine_zipper
Motif
Other DBs
NCBI-GeneID:
107085845
NCBI-ProteinID:
XP_015231943
LinkDB
All DBs
Position
Unknown
AA seq
1836 aa
AA seq
DB search
MWLIIFTLTALALCCPVRAQGPEPEFVDMCTESSCYPATGDLLIGRAHKLTASSTCGLQQ
PERFCIVAHLEDQSGQQRVDVPFHSESSLNQSIHTERGEKNIPERKLHFLDYPNNPQQVG
GGEEKYELQGEKKCFTCDSREAYNEDSNPYSHTIENVVTTFAPNRLKTWWQSENGVENVT
IQLDLEAEFHFTHLIMTFKTFRPAAMVIERSMDFGENWEVYRYFAYDCESVFPGISAGPL
QRVDDIICDSRYSNIEPSTEGEVIFRVLDPVFEIEDPYSLRIQKMLRITNLRVKFIKLHT
LGDNLLDSRGEVTDKYYYALYDMVVRGNCFCYGHASECAPIAGEERRAEGMVYGRCVCNH
NTEGLNCERCRDFYHDLPWRPAEGRNTHACKMCECNRHSTKCHFDLETYISTGNVSGGVC
DDCQDNTVGRQCEQCAPHFYQHPNRDLRDPNICEPCDCDPEGSLQGGICDSRTDVSAGMI
SGQCRCKLNVEGERCDHCRQGHYGLGQGPGGCLPCTCNPDGTMPGGNTCDSNTGKCFCKQ
LVTGHNCDECKPEHWGLSNDMDGCRPCDCDQGGAVNNNCDPFTGQCVCRDHMFGRRCNQV
ESGFYFIALDHYTYEAEDAKHGPGVTFVARAYPQDRSPTWTGMGFAHVPERGYIEFNVDN
IPESMDYDILIRYEPQLPQEWEQVTVRVERPVFNPPTYDAHCINSLHRGDDQSISLPPGS
RHVLLVSPVCLEKGLNYTIRLTFPLYSTDSHMLDPHTLIDSLVLMPRVREMEMFHGTEGK
EAWDTFQRYRCLESSRSVIKSPMTDICNDYIFSVSALLHKGAIGCHCDPQGSISTVCEPS
GGQCRCRPNVIGRNCDHCAPATFSFSPAGCRSCDCDPIGSVTPFCHESTGQCECVSGATG
RQCSHCLPGFWGFPQCRPCQCNGHSEYCHPQTGECQGCRDFTTGHHCERCINGYHGDPQL
GSGGHCRPCMCPDGPRSGRQFADSCYLLTNQLVCVCSHGYKGTRCDECAPGYHGNPLIPG
GRCTPCDCNNNIDMHDPGSCDVRTGACLKCLYHTQGHSCQHCKPGYYGNAATQSCRKCMC
DPMGTLPYVCSSPDDCRCDQRSGQCSCQPNVVGQNCDQCAPNTWNIASGTGCQRCDCDPV
HSVSSSCNEVTGQCVCEPGFGGRTCRECKELFWGDPEVECHACDCDSRGISSEQCDRATG
QCTCMESFSGPRCDQCARGYKGEFPNCEPCHQCFPIWDAVVGELTNQTRRLEARVDELLT
AGVTAPYKELINSLERNAKAVREIVENKTAGEKLENVQEVMHQITGVMSFLNGKLNTTEG
NLIFAFQEKNLTGTNLEELTDEAEKLQQRVEELRQQVQNIKNANIQGAMSTISAAHGESK
AAELRSQAATSDPGNTVEQSAALREATEDKLSSSQKEFDRKHQRNSQKLDKLSKDLETFD
LSPLSEKTCGSSAEGESCSQCGGFGCVREDGGHHCGGDGCGGFVTTSQTALKSSQNLEQE
IQQAMEEVDKLSRMVWEANIRANEAKAKAIEVLISSNRSKERVEQSNEQLRALIKEIRDL
LTNEKADASVIEAVANEVLALKMPTSAEKLQELTNEIREKVGSLTSVEEILRESAEDIRS
AESLLTQAKSASEGALHLKETAESVKAALEETERAQRVAMDAIQLAQNNTRETVDLVNSM
ETETSESEQKVSQATGRLFKLEQELMLLRNNDLEMNQKVETAEQVSDRAKQIAEEAQKEF
DEDLKEKLEVVEEEMGDKGESVLQARRKADELQREARELIEQSSSKLQRLKELENSYEEN
QRLLEKKAEELAEFERTARLILEEISSKVSLYSSCQ
NT seq
5511 nt
NT seq
+upstream
nt +downstream
nt
atgtggctcatcatcttcactctaacagctttagctctgtgttgtcctgtcagagcacag
gggccagagccagagtttgtagacatgtgcacagagagcagctgctaccccgccaccggt
gacctgctgatcggcagagcgcacaaactcaccgcctcctccacctgcggcctccagcag
ccggagcgcttctgcatcgttgcgcacctggaagaccaatcagggcagcagagggtcgat
gttcccttccactcagaaagctctctcaatcaatcaatccacacagagagaggagagaag
aacatcccggaaagaaagcttcattttctggattatccgaataatccgcagcaggttggg
ggaggagaagagaaatacgaacttcagggggagaagaaatgtttcacatgtgactcaagg
gaggcgtataatgaagacagcaacccttacagccataccattgagaacgtggtcaccacc
tttgcccccaaccgcctcaagacctggtggcaatctgaaaatggcgttgagaatgtaacc
atccagctggacctggaggccgagtttcatttcacgcacctcatcatgactttcaagacg
tttcgtcctgctgccatggtgatcgagcgctccatggattttggggaaaattgggaggtt
tatcgatactttgcgtacgactgcgagtctgtcttccctgggatctccgccggacccttg
cagagagtagacgacattatctgcgactcccgctactcaaacatcgagccatccacagag
ggagaggtgatattccgagtgttggatcctgtttttgaaattgaagacccctatagcttg
aggatacagaaaatgctgaggatcacaaacctcagagtaaagttcatcaagctccacacg
ctgggtgacaacctgctagactccagaggggaggtgacggataagtactactacgccctc
tacgacatggtggtccgtgggaactgcttctgctacggccacgcgtcggagtgtgctcct
atagccggagaggagcgccgagctgagggcatggtttatggccgctgcgtttgcaaccac
aatactgagggactaaactgtgagcgctgtcgagacttttatcacgacctgccgtggaga
cctgcagagggccgcaacacccatgcctgcaaaatgtgcgagtgcaatcgacactccact
aaatgtcactttgacctggaaacgtacatttccaccggtaacgttagcggaggggtgtgt
gacgactgtcaggacaacacggtgggcagacagtgtgagcagtgtgcgcctcacttctac
cagcacccaaacagagacctgagagacccaaacatctgtgaaccatgtgactgtgatccg
gagggatctctgcagggaggaatttgcgactcgcggactgatgtgtctgccggaatgatc
tcgggtcaatgccggtgcaaactcaacgtggaaggggagcgttgtgaccactgcagacag
ggacactatggactgggacaagggccgggggggtgcctgccttgtacatgcaacccagat
ggaacgatgccaggaggaaacacctgtgattccaacacagggaaatgcttctgcaaacaa
ctcgtcactggtcacaactgcgatgagtgcaaaccggagcactggggtctatcaaatgac
atggatgggtgcagaccatgtgactgcgaccagggaggagcggtcaacaacaactgtgat
cccttcacagggcagtgtgtgtgcagggaccacatgtttggacgccgctgcaatcaagtg
gagtctggattctactttatcgctttggatcactacacgtatgaagcagaagatgccaaa
catggacctggcgtcacattcgtagcgagagcctatcctcaggaccgaagccccacgtgg
actgggatgggctttgctcatgttcctgaaagagggtatatagagttcaacgtcgacaac
atcccagagtcaatggactatgacatccttatccgctacgagccacagctgccgcaggag
tgggagcaagtgaccgttcgagtggaacgccccgttttcaaccctccaacctacgacgct
cactgcatcaactctctccataggggagatgatcagtccatctctctcccacctggatcc
aggcatgtactgctagtaagtcccgtttgtttggagaaaggactgaactacaccatccgc
ctgactttcccgctgtactcgacggacagccacatgctggacccacacacgctcatcgac
tctctggtcttgatgccccgggtcagagagatggaaatgtttcatgggacagagggtaag
gaagcgtgggatacgttccagcgttacagatgtttagaaagcagccgcagcgtcatcaaa
agcccgatgacggacatctgtaatgactacattttcagcgtctccgctctgctgcacaaa
ggagcaataggttgccactgcgaccctcagggttctatcagcaccgtgtgcgagccaagc
ggcggtcagtgtcgctgtcgtcccaacgtgatcggcagaaactgtgaccactgtgctccg
gctacattctcattcagtcctgctggttgcagatcttgtgactgcgaccccatcggctcg
gtcacacctttctgtcacgagtcaactggtcagtgtgagtgcgtatcgggagccaccgga
cgccagtgttcccactgcttgccaggtttttggggcttcccccagtgccgaccatgccaa
tgtaatggccacagcgagtactgtcaccctcagaccggagagtgtcagggttgcagagac
ttcaccaccggacatcactgtgagaggtgtataaatggttaccatggtgacccacagctg
gggtcggggggccactgtcgtccctgcatgtgtccggacggcccccgcagtggtcggcag
tttgcggacagctgttatcttttaaccaatcagctggtgtgtgtatgcagccacggctac
aaaggaaccaggtgtgatgagtgtgccccaggttatcatgggaaccctctcattcctggg
ggccgctgcacgccttgtgattgtaacaacaacatcgacatgcatgaccccggatcctgc
gacgtccgtacaggcgcctgtctcaaatgtctgtaccacacgcagggccactcatgccag
cactgcaagccggggtattacggcaatgctgcaacacagagctgcaggaagtgcatgtgt
gaccctatggggacgctaccgtacgtctgttcgtcccctgatgactgccggtgtgaccag
cgcagcggccagtgttcctgccagcccaacgtggttggacagaactgtgaccagtgcgct
cccaacacgtggaacatcgccagtgggacgggctgccagcgctgcgactgcgaccccgtc
cactctgtcagctcctcctgcaatgaggttacgggtcagtgtgtgtgcgaaccaggattc
ggtggcaggacgtgtagagaatgcaaagagctgttctggggagatccagaggtcgaatgt
cacgcttgtgactgcgactccagaggaatatccagcgagcagtgtgatcgagccacaggg
cagtgcacctgcatggaaagcttttcaggccctcgctgtgatcagtgtgccaggggctac
aagggagagttccctaactgtgaaccctgccaccagtgcttccccatctgggacgctgtg
gttggcgagctgaccaatcagactcgtcggctggaggcccgggttgatgagctgctgacg
gctggagtgacggcgccgtacaaggagctgatcaacagtttggagagaaacgccaaggct
gtcagggagatagtggagaacaagacggccggagagaagctggaaaatgtccaagaagtg
atgcatcagattactggagtgatgtcattcctcaacggaaagctgaacacgaccgaggga
aatttaatctttgcttttcaagaaaaaaacctcacaggcacaaacttagaagaattgact
gatgaggctgagaagctgcagcaacgcgtagaagagctcagacagcaggtgcaaaacatc
aagaacgccaacatccagggagctatgagcacaatctctgctgcacatggcgagtccaaa
gctgcagagctacgctctcaggctgcaaccagtgatccgggcaacaccgtggaacaatcg
gctgcattacgggaagccactgaggacaaactgagcagcagtcagaaggagtttgaccga
aaacaccaaagaaactctcagaagctggataaactgtccaaagatttggaaacctttgac
ctatccccgcttagtgagaagacatgtggcagctcagctgaaggggaaagctgctctcag
tgcggaggattcggttgtgtcagggaagatggagggcatcactgtggaggagatggttgc
ggcggttttgtcacgacttctcaaaccgccctgaagtcctcccagaacctggagcaggag
atccagcaagctatggaggaggtggacaagctctctaggatggtgtgggaagcaaacatc
cgcgctaatgaggccaaggctaaggccatagaggtgctgatctcatccaatcgcagcaaa
gagagagtagagcagagcaacgagcagctccgtgccctcatcaaagagatacgagatctt
ctgaccaacgaaaaggcagacgcttctgtgattgaggccgtggccaacgaggtgctggcg
ttgaagatgcccacgtcggcggagaaactgcaggagctgaccaatgagatcagggagaag
gtcggcagtctgaccagcgtggaggagatcctcagggagagcgctgaggacatccgaagt
gcagagtctctcctgactcaggccaaatcagccagtgagggggcgttacatctgaaggag
acggcagaatcagtgaaagcagccctagaagagactgagcgcgctcagagggtcgccatg
gacgccatccagctggctcagaacaacacaagagaaacagtcgatctggtcaattctatg
gaaacagagacgtcagaatcggagcagaaggtcagccaggccactggccgtctgtttaag
ctggagcaggaactgatgctgctgaggaacaacgacctggagatgaaccagaaggtggaa
acggcagagcaggtctccgaccgggccaaacagatcgcagaggaggctcagaaggagttc
gatgaggaccttaaagaaaaactagaggtggtagaggaagaaatgggggataagggggag
tcggtgctgcaggcgaggaggaaagcagatgagctgcagagggaagccagagagctgatc
gagcaaagcagcagcaaactgcagagacttaaagagctggagaactcctatgaagagaac
cagcggctcctggagaagaaagctgaggagctggctgagtttgagcgaaccgcccgcctc
atcctggaggagatcagcagcaaagtgtccctgtacagcagctgtcagtga
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integrated database retrieval system
