KEGG   Cyprinodon variegatus (sheepshead minnow): 107085849
Entry
107085849         CDS       T06110                                 
Symbol
shfm1
Name
(RefSeq) 26S proteasome complex subunit DSS1
  KO
K10881  26 proteasome complex subunit DSS1
Organism
cvg  Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03050  Proteasome
cvg03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cvg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03050 Proteasome
    107085849 (shfm1)
  09124 Replication and repair
   03440 Homologous recombination
    107085849 (shfm1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cvg03019]
    107085849 (shfm1)
   04131 Membrane trafficking [BR:cvg04131]
    107085849 (shfm1)
   03051 Proteasome [BR:cvg03051]
    107085849 (shfm1)
   03400 DNA repair and recombination proteins [BR:cvg03400]
    107085849 (shfm1)
Messenger RNA biogenesis [BR:cvg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX-2 complex
     107085849 (shfm1)
Membrane trafficking [BR:cvg04131]
 Exocytosis
  Tethering complex
   Exocyst complex assembly proteins
    107085849 (shfm1)
Proteasome [BR:cvg03051]
 Eukaryotic proteasome
  Regulatory particles
   PA700 (19S proteasome)
    non-ATPase subunits
     107085849 (shfm1)
DNA repair and recombination proteins [BR:cvg03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Other HR factors
     107085849 (shfm1)
SSDB
Motif
Pfam: DSS1_SEM1
Other DBs
NCBI-GeneID: 107085849
NCBI-ProteinID: XP_015231945
Ensembl: ENSCVAG00000015390
UniProt: A0A3Q2E878
LinkDB
Position
Unknown
AA seq 70 aa
MSDKKQTVDLGLLEEDDEFEEFPAEDWTGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAEL
EKHGYKMETS
NT seq 213 nt   +upstreamnt  +downstreamnt
atgtcagacaagaaacagaccgtagatcttggtttactggaggaggacgatgaatttgaa
gaattcccagctgaagactggacgggactggatgaagatgaagatgctcatgtgtgggaa
gataactgggatgatgataatgttgaggatgatttctcaaatcagctgagagcggagctg
gaaaaacatggttacaagatggagacgtcataa

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