Cyprinodon variegatus (sheepshead minnow): 107085874
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Entry
107085874 CDS
T06110
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain
KO
K06236
collagen type I alpha
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04510
Focal adhesion
cvg04512
ECM-receptor interaction
cvg04518
Integrin signaling
cvg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107085874 (col1a2)
04518 Integrin signaling
107085874 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107085874 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
107085874 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cvg00536
]
107085874 (col1a2)
Glycosaminoglycan binding proteins [BR:
cvg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107085874 (col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
107085874
NCBI-ProteinID:
XP_015231985
Ensembl:
ENSCVAG00000015066
LinkDB
All DBs
Position
Unknown
AA seq
1349 aa
AA seq
DB search
MLSFVDTRILLLLAVTLYLTTCQLSGPKGPRGDRGPQGPNGRDGKPGLPGPPGPPGPPGL
GGNFAAQYDGAKAPDPGPGPPGPPGPRGSPGMPGPQGPQGQTGHPGEPGQPGNDGPVGPR
GPPGPPGKSGEDGNNGRPGKPGDRGTPGPQGARGFPGTPGLPGMKGHRGYNGIDGRKGEP
GTAGPKGESGSPGSSGSPGLAGQRGQPGERGRPGPAGPAGARGSDGNVGPAGPAGPLGAA
GPPGFPGGPGPKGEIGAAGSTGPSGPQGSRGEPGPNGAVGPVGPPGNPGNNGLNGAKGAA
GTPGIAGAPGFPGPRGGPGPQGPQGAAGPRGPSGDPGLQGVKGDTGSKGEPGNAGPQGPP
GTQGEEGKRGPTGEIGANGPPGNRGARGAPGTRGIPGSDGRAGPVGMPGARGATGPAGSR
GAPGDAGRAGEPGPAGLRGLPGSPGSSGPPGKEGPSGPAGQDGRAGPPGPAGPRGQPGNI
GFPGPKGASGESGKPGEKGPSGPTGLRGPPGPDGNNGATGPMGLAGGPGEKGEQGPAGAP
GFQGLPGPAGPAGEAGKPGERGIPGEQGTAGPAGAKGERGNPGSAGATGPQGQAGPRGPA
GPPGSDGGKGEPGAAGNAGAPGHQGPSGLPGERGIAGAPGGKGEKGEAGNRGPDGNPGRD
GARGLQGPPGPPGPTGANGDKGEMGSFGPAGPPGPRGQSGERGEVGPPGPPGFSGPPGAD
GQPGARGERGPSGAKGEAGAAGPAGPSGQSGPAGPAGPAGPPGARGENGPPGLTGLPGAA
GRVGAPGPAGIVGPPGPSGSAGKDGPRGLRGDPGPAGPSGEQGMVGPPGPPGEKGPSGES
GPAGSPGAPGPSGLLGPPGFVGLPGSRGQLGLPGGPGPAGPPGRSGPPGVTGARGAPGNM
GMPGMNGPQGEAGREGSPGNDGPPGRPGAPGFKGDRGEPGSPGSLGLAGPPGPAGPSGAA
GRPGNRGEPGSQGPSGAVGPAGARGAPGPSGPRGEKGVAGDKGDRGMKGLRGHPGLQGMP
GPSGPPGEPGPAGALGAAGPRGPSGPNGPPGKDGRSGTHGPMGSPGSRGPPGYVGPSGPP
GSPGLPGPPGPAGGGYDVSGYDEYRADQPALRAKDYEVDATIKSLNTQIENLLTPEGSRK
NPARTCRDIKLSHPDWSSGFYWIDPNQGCTNDAIKVFCDFTTRETCIYAHPERIARKNWY
RGTEKRKHVWFGETINGGTEFTYNDETISTQSMATQLAFMRLLSNQASQNITYHCKNSIA
YMDGQSGNLKKAVVLQGSNDVELRAEGNSRFTFSVLEDGCTRHTGEWSKTVIEYRTNKPT
RLPILDIAPLDIGGADQEFGLDIGPVCFK
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatactcggattctgttgctgcttgcagtaactttatacctaacg
acatgccaattgtcgggtcccaaaggacctcgaggtgacaggggtcctcagggcccaaat
ggaagagatggcaaacccggactccctggccctcctggccccccaggcccccctggactt
ggaggaaactttgctgctcagtatgatggtgccaaggcccctgatcctggccctggaccc
ccaggaccaccaggacccagaggctcccctggaatgcccggaccccagggaccccaagga
cagacaggacaccctggtgagcctggccagcctggaaacgacggccctgttggtccccgt
ggaccccctggaccacctggcaaatctggagaagatggaaacaacggcaggcctggcaaa
cccggagacagaggtacccctggccctcagggcgctcgtggattcccaggaaccccagga
cttccaggaatgaagggacacagaggttacaatggtattgatggacgcaaaggagaacct
ggcactgctggccccaagggtgagtctggttcccctggatcttctggaagtcctggactt
gctggacaacgcggtcagcctggtgagaggggtcgccccggccctgctggtcccgctggt
gctcgtggttctgatggcaatgtcggacctgctggtccagctggtcctctcggtgctgcc
ggtcccccaggcttccccggtggtcccggccccaagggagagattggagccgctggaagc
actggcccatctggacctcaggggtctagaggagagcccggacctaatggtgctgttgga
ccagttggtcctcctggtaaccctggtaataatggcctgaatggagccaagggagctgct
ggcacccctggtattgctggagctcccggtttccctggaccaagaggaggccctggacct
cagggacctcagggtgctgctggaccaagaggaccttctggtgatcctggtcttcagggt
gtcaagggagacactggttccaaaggagagcctggcaacgctggtccccagggacctcct
ggaactcaaggggaggaaggcaagagaggacccactggtgagatcggtgccaatgggcct
cctggcaaccgtggtgctaggggtgctcccggaacccgtggcattccaggttctgatgga
agagctggcccagttggtatgcctggtgcccgtggtgccactggtcccgctggatcgcgt
ggagcccctggagatgctggtcgtgctggtgaacctggccctgctggtctcagaggtctc
ccaggaagccctggaagctctggacccccaggaaaggagggaccttctggtcctgccgga
caagatggccgtgctggacctcctggccccgctggacctagaggccagcccggaaacatt
ggtttccctggacccaaaggagcatctggagaatctggcaagcctggcgagaagggaccc
agtggccccactggactgaggggaccccctggacctgatgggaacaacggagccactggc
cctatgggattagctggcggtcctggtgaaaagggagagcagggaccagccggagctcct
ggcttccagggtctgcctggacctgctggacctgctggtgaggctggcaagcccggagaa
agaggtatcccaggagaacagggaacagctgggccagctggtgccaagggagagcgcggt
aacccaggttctgctggagcaactgggcctcaaggacaagctggaccccgtggaccagct
ggaccccctgggtctgatggtggaaagggagagcctggagctgctgggaatgctggtgcc
cctggacatcaaggacctagtggcttacctggtgagcgcggtatagctggtgctccaggt
ggcaagggagagaagggagaggctggaaacagaggccctgatggaaatcctggcagagat
ggagcccgtggccttcaaggacctcccggtcctcctggacccactggagccaatggtgat
aagggtgagatgggttcctttggacccgctggccctcctggacctcgtggacaatctgga
gagcgtggagaggttggccctcccggaccccctggatttagcggcccccctggtgccgat
ggtcagcccggagccagaggagagcgtggaccttctggagctaagggagaagctggagcc
gctggccctgctggaccttctggacagtctggacctgctggccctgccggccctgctgga
cctcctggtgctcgtggagagaatggccctccaggtttgactggtttacctggtgctgct
ggtagagttggtgctcctggtcctgctggtattgttggacctcctggccccagtggttct
gctggcaaagatggacctcgtggtctccgtggtgaccctggccctgctggtccctctggt
gagcaggggatggttggaccacctggtcctcctggagagaagggaccatctggagagtct
ggccctgctggatctcctggtgctcctggaccctctggacttcttggacctccaggattt
gtgggtctcccaggtagtagaggacaacttggtcttcctggtggtcccggccctgctgga
ccccctggtagaagcggaccccctggtgtaactggagctcgtggtgcccctggtaacatg
ggcatgcctggtatgaacggacctcagggagaggctggacgtgagggtagccctggtaac
gatggaccccctggtcgtcctggtgcccctggattcaagggagatcgtggtgagcctgga
tctcctggttccttgggactcgctggtcctccaggacccgctggaccaagtggagctgcc
ggcagacctggaaaccgtggagagcctggctcacaaggtccttctggagctgttggcccc
gctggagccagaggagcccctggaccctctggacctcgtggtgagaagggtgttgctgga
gacaagggagacagaggcatgaagggtctgcgtggacaccctggtctccagggaatgcct
ggaccctctggacctcctggagagcccggacctgctggagcccttggagctgctggacct
agaggaccttctggacccaatggaccccctggtaaagatggtagatctggcacacatggt
cccatgggctctcctggttcccgtggacctcctggatatgttggaccatctggtcctcct
ggatctcctggtctgcctggacctcctggccctgctggtggcggatacgacgtctccgga
tacgatgagtacagagctgatcagccagctctcagagccaaggactatgaagtggatgcc
accatcaagtctcttaacactcagattgagaaccttcttacccctgagggatccagaaag
aaccctgcacgcacctgccgtgacatcaagctcagccacccagactggagcagcggattc
tactggattgaccccaaccagggctgcaccaacgatgccatcaaggtcttctgtgacttc
accacccgtgagacctgcatctatgcccatcctgagagaattgcacgcaagaactggtac
agaggaacagagaagaggaagcatgtctggtttggagagaccatcaatggtggtaccgag
tttacctacaacgatgagaccatcagcacacagagcatggccacccagctggctttcatg
cgcctgctttccaatcaggctagccagaacatcacctaccactgcaagaacagcatcgcc
tacatggatggtcagagcggcaacctgaagaaggccgtggtgcttcaaggctccaacgat
gttgagctcagggccgagggcaacagccgctttaccttctctgtgctggaggacggctgc
actagacacactggtgagtggagcaagacagtgattgagtacagaacaaataaaccaact
cgcctccccatcctcgacattgcacctttggacattggtggagctgatcaggagtttggt
ttggacattggcccagtctgtttcaaataa
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integrated database retrieval system
