Cyprinodon variegatus (sheepshead minnow): 107085883
Help
Entry
107085883 CDS
T06110
Symbol
vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvg04131
]
107085883 (vps50)
Membrane trafficking [BR:
cvg04131
]
Protein recycling
Others
EARP complex
107085883 (vps50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
107085883
NCBI-ProteinID:
XP_015231998
Ensembl:
ENSCVAG00000014679
LinkDB
All DBs
Position
Unknown
AA seq
992 aa
AA seq
DB search
MQKIKSLMTRQGLKSPQESMADLSPVENLRIHSTEELRELRQQPIDPQAEQEIIDSIEEV
YFSSDSFDMVQHELEKLPPELNLQELEEHRDKLKRQQAAVSKRVADLILEKQPSYVKELE
RVTALQTNLQLAAVICTNARRQLRVAKEEFTEASLGLLANQRRRQLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDVLHYTKVQKAYTLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITLDSYIPCLTDLCKALWEVMLSYHRTMQWHEEHDKQKAAPSQDD
SAAEPDELNVDRSYVKKKLEHGLTRIWQDVQLKVKVYILGTDMSNFKYDDFIVVLDVISR
LMQVGEEFCGSKSEVLQESIKRQSVNYFKNYHRARLEELRMFLENETWELCPVKSNFNIS
QLHEFKFMGQCRSPSVSPSRQAASSVPPALEELSLFQQYHQDGNPFEMHIENKEEETEDV
LASNGYESDELEKSVYQDYDSDSDVPDELKQDFVDEQTGDVPLKSVSRETIRSKKKSDYN
LSKASAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHCVSQLFDYYLYAVYTFFGRND
MPIPSPSLPTYSGREAVPARVVGPACLYESSGLGLISSRLRTTLNRIQESLIDMDPVGET
VGVHGPPEDRKEKVPIPHLSQMVVLTDSGTLYGLAQRVVATESLVFLAEQFESLQSHLDT
MMPAAKKPFLQQFYSQTVSTASELRKPIYWIVAAKAIDYEQMLLMMAGVKWDIKEIMSQH
NVYVDVLLKEFEQFNKRLGDVSRHVRIPLPVSNVLWEHCIRLANRTLVEGYANVKKCSNE
GRALMQLDFQQFLMKLEKLTDLRPIPDKEFVETYIKAYYLTENDMEQFIKNHREYSMKQL
ANLVNVCLGSHINKKARQKLLAAIDDIDRPKR
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagataaagtctcttatgacccgacagggcctcaaaagcccccaggagagcatg
gctgacctgagtccagtagagaatctgaggatccacagtacggaggagttgcgggagttg
aggcagcagcccatcgatccgcaggcggagcaggaaatcatcgacagcatcgaggaggtc
tacttctccagcgactccttcgacatggtgcagcacgaactggagaagcttccacctgag
ctgaacctgcaggagctggaggagcacagagacaaactgaagagacaacaggctgcagtt
tctaaaagggtcgctgatctaattttggagaagcagccttcttatgtcaaggaactggag
agggtgacagcattacagaccaatctccagctggcagcagtcatttgcaccaacgcaaga
agacaactcagagttgcaaaggaggagttcacagaggccagcctgggtctgttagccaat
cagaggaggcgacagctgctgacaggcctgcttaagtctctaaggaccatcaagactctg
caaagaacagatgtaagactcagcgagatgcttgaggaggaagactatccaggtgcaatc
cagctctgtctagaatgtcaaaaggctgccagcaccttcaagcactacagctgcatcagt
gagctgaactctaaattacaagacactcttgagcaaatagaggagcagctcgatgtcgcc
ctgtcaaagacttgtaagcactttgatgtgttgcactacaccaaagtccagaaagcctac
acgctccttgggaaaacccagactgcgatggatcagctgcacatgcacttcacccaggcc
atccacaacacagtgttccaggttgtgctgggatacgtagaactgtgtgctggcaatgcg
gacaccaagtttcaaaagatgcagtataaggacctttgcacgcacatcaccctcgacagc
tacattccctgcctgacggatctctgtaaggctctgtgggaagtgatgctgagctaccac
cgtaccatgcagtggcatgaagagcatgacaagcagaaggccgcaccctcacaagatgac
tcagcagcagagccggatgagttgaatgtggaccgcagctacgtcaagaagaagctggag
cacggattgacgaggatctggcaggatgtccagctaaaggtgaaggtctatatcttggga
acggacatgtctaacttcaaatacgatgatttcatagtggtgctggatgtcatcagcagg
ttgatgcaggttggtgaagagttctgtggcagtaagtcagaggtcctgcaggagtctatc
aaacgccagagtgtgaactacttcaaaaactatcacagggcacgattggaagagctcagg
atgtttctagaaaatgaaacgtgggaactgtgtccagtcaagtccaactttaacatttcc
cagctccacgagttcaagttcatgggccagtgccgctctccctccgtttccccaagcaga
caggctgcgtcctcggttcccccggccctggaggaactgtcccttttccagcaatatcat
caggatgggaatccctttgagatgcacattgaaaacaaggaagaggagacagaggatgtg
ctcgcttctaatgggtacgaatcggatgaactggagaagagcgtctatcaggactacgac
agtgacagcgatgtcccagatgagctcaagcaagactttgttgacgagcagacaggcgat
gttcccctgaagagcgtgtcccgtgagaccataagaagcaagaaaaagtcagattacaac
ctcagcaaggctagcgcgccaattctcaccaacaccaccctcaacgtcatccggcttgtc
ggaaaatacatgcagatgatgaatattctaaagccgattgccttcgatgtcatccactgt
gtatcacagctctttgactactacctttatgctgtatacaccttctttggacgtaacgac
atgcccatcccaagcccatctctgcccacctatagtggcagagaggcagtgccagccagg
gtggtgggccctgcctgcttgtatgagtcatcgggtttgggccttatcagcagtcgactg
agaaccactctgaaccggatccaggagagtctcattgacatggatcctgtcggggagaca
gtaggagtccatggtccaccagaggacaggaaggagaaggtccctattcctcacctgagc
cagatggttgttctcacagacagcggtactctgtatggactggcgcagagggtggtggcc
actgagtctcttgtgtttttggctgagcagtttgagtccctgcaatcccacttggacaca
atgatgcctgcagccaagaaaccgttccttcaacagttttattctcagaccgtgtccaca
gccagcgaactacgtaaaccaatatactggatagtggcagccaaggctatagactacgaa
caaatgctgctgatgatggccggagttaaatgggatatcaaggagataatgtcacagcac
aatgtatatgtggatgttctactgaaggagtttgagcaatttaacaagcggctgggtgat
gtttccagacatgtgcgtattcctttgcctgtgtccaacgttctctgggagcactgcatt
cgcctagcgaacaggactctggttgaaggctacgctaacgtgaagaagtgcagcaacgag
ggccgagccttgatgcagctggactttcagcagttcctgatgaagctggagaaactaacg
gacctgcgacccatccccgacaaggagtttgtggaaacctacatcaaggcctattacctg
actgagaacgatatggagcagtttatcaaaaatcacagggagtactccatgaagcagctg
gccaacctggtgaatgtgtgtctgggttcacatataaacaaaaaggctcgtcagaaactt
ctagctgccatcgatgacatcgaccgtcccaagagatag
DBGET
integrated database retrieval system
