Cyprinodon variegatus (sheepshead minnow): 107086191
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Entry
107086191 CDS
T06110
Symbol
skiv2l
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107086191 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107086191 (skiv2l)
Enzymes [BR:
cvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107086191 (skiv2l)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107086191 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
107086191 (skiv2l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
Motif
Other DBs
NCBI-GeneID:
107086191
NCBI-ProteinID:
XP_015232461
Ensembl:
ENSCVAG00000003072
UniProt:
A0A3Q2DP16
LinkDB
All DBs
Position
Unknown
AA seq
1246 aa
AA seq
DB search
MDRIHVPPLGPMDLPLSLLEMGCSGRCELITHPLPGQPLAPQSTLPHGLPPTNLSLEREV
EKQFLQDPAWLPIHDTDFAFQKFLKVTERKVDVDSLLSSNPSPLHSGLSVVRDPTTGMLL
DFTEVLLENTGLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPGGMEELTLDQIKTRSEQE
EEIDFENNLLKVPPGLKAGMDFTEKGATITKSEVNLMSLLSTLEDIPDLQAEAEQKEDSK
AGEETIKLARTNSLEDLGIKDVESSPSPKEAGKEDKSKPKENPEEKKKWAIPVDISSPCE
DFYKRIPNPAFKWPFELDTFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMT
RTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVI
RDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNAVEFSEWIGRIKKRH
IYVISTMKRPVPLEHYLYTGNSTKTQKEMFLLVDAAGNFLTKGYYTAVDTKKERTSKHAQ
SFGTKSIPQNTSASQDRAVWLTLLHFLSQRQQTPVVAFTFSRTRCDENARSLDSMDLTTS
IEKAEIHSFFQKSLSRLRGGDRQLPQILLMRDLLKRGIAVHHSGILPILKEVIEMLFSKG
LVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGT
VIILCKSGVHDMADLHAMMMGKPTTLHSQFRLTYTMILNLLRVEALRVTDMMRRSFSESH
RDTQAHEKRISQLKQMLASLPPQETEGQLSDILPYYHTVTELQNTREALQQAILESVNGL
KALSVGRVVIVNNKQHLNALGVILQVSNDAVNRTFTALIICEKGNEEGDGKGEDNASFPH
LYNTALFIPEGPCSHTVQKLKLQDISAITVKTLKVIPDRIIDNYNKRQQPRFRNDPPGQA
ISTATQELLRLAEANPSGMATLDPVNDLQLKSVDVVEGSMRLRALQDSLRDFNCIHSPTF
AEQFARIKERMSVQEELDRLLFLVSDQSLTLLPEYHQRIQVLQSLQYIDSSGAVQLKGRV
ACQISSHELLLTELLFENVLSPLAPEESAALLSCLVFTQNTQMEPHITNTLKEGIDRVLS
VAQRIGQLQRECGIAQTAEEFVGQFKFGLTEVVYCWARGMPFAEIALLTDVQEGTVVRCI
QRLDEVLKEVRQAARIVGDSVLGSKMERASLAIRRDIVFTASLYTH
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggacagaatacatgtcccccctttgggtcccatggacctgccgctgtccctgctggag
atgggatgctcaggcagatgtgagctgataacacacccgctccctggtcagccactggcc
ccccagagcacgcttcctcatgggcttcctcccaccaacctgagcctagagagagaagtg
gagaaacagtttttgcaagacccagcctggctgcccatccatgacacagactttgccttt
cagaagtttctcaaagtgactgaaaggaaggttgatgtcgactccttacttagcagcaat
ccatctccacttcactctgggctctcagtggtcagagatccgaccacagggatgctgctg
gacttcacagaggttttattagaaaacactggtctgtcagccaaaaactcactgtcacta
cagcgtcagcctggacctccatcagaaagccttcggggaagcaacactaactatcccttc
cttcctggagggatggaggagctcactctggaccaaatcaagacaagatctgaacaggag
gaggaaattgactttgagaacaatttactgaaagtccctcctggactcaaagctggcatg
gattttactgaaaaaggagccaccataacaaaatcagaggtgaacctcatgtctctgctg
tccacgctggaggacattcctgatctccaggcagaagcagagcagaaagaggatagcaaa
gcaggagaagagaccatcaaattagcaaggaccaacagtctggaagatctgggcattaag
gatgtagagtcctccccttctcccaaagaggcaggaaaagaggacaaatcgaaaccaaaa
gagaacccggaggaaaaaaagaaatgggccatccctgtggatatatcatcaccctgcgag
gatttctacaaacgcatcccaaacccagcgttcaagtggccctttgagttggatactttc
cagaaacaggctgtgctgaggctggaggcccacgactctgtgtttgtagccgctcacacg
tcagcaggcaaaacggttgtagcagagtacgccatcgctctgtcccagaaacacatgaca
aggactatctatacatctcccatcaaagctctgtccaaccagaaattcagagactttaaa
aacacttttggggatgtaggactcctgacgggagatgtgcagctcagtcctgagtcttcc
tgtctcatcatgactacagagatcctcaggtcgatgctctacaacggctcagaggtcatc
agagacttggagtgggtgatcttcgatgaggtccactatattaatgatgctgagagaggg
gtggtttgggaggaagtactgatcatgcttcctgatcacgtcagcatcattctgcttagt
gccacggtccccaatgctgtggaattcagcgagtggatcggtcgtattaagaagaggcat
atttatgtgattagcacaatgaagcgccccgttcccttggagcattatctgtacactggg
aacagcacaaaaactcagaaggagatgttcctgctggtagatgctgcaggaaacttcctc
actaaaggctactacacagctgtcgatacaaagaaggagcgaactagcaaacacgctcag
tcgtttggcaccaagagcatccctcagaacacctcagccagccaggaccgagcggtgtgg
ctcaccctgctacacttcctgtcgcagcggcagcagaccccagtggtggccttcacgttc
tctcggacacgatgcgatgagaacgcacgctctcttgactccatggacctcaccacctcc
atagagaaagccgagatccactccttctttcagaagagcctgagtcgccttcgaggtgga
gacaggcagctgccgcagatcttgctcatgcgagaccttttgaagaggggcatcgccgtc
caccatagcgggatcctgccaatcctgaaggaggtcatcgagatgcttttctccaagggc
ctcgtaaaggtgctgtttgccacggagacatttgcaatgggagtgaacatgcctgccagg
accgtggtgtttgacagcattaggaaacacgacggcaccggcttcaggaatctgctgcca
ggtgaatatattcagatggcgggaagagcagggaggagaggcctggacgccacgggcaca
gtgatcattttgtgtaaatcgggtgttcatgatatggctgatctgcacgccatgatgatg
ggaaagccaaccacccttcattcccagttccgactgacctacaccatgatcctaaatctg
ctgcgggtcgaagctctcagagtgaccgacatgatgaggaggagcttctctgagagccac
agagacactcaggcacacgagaagagaatcagtcagctgaagcagatgttggcatctctt
cctcctcaagagacagagggccaactctctgacattttgccttactaccacacagtgacc
gagctgcagaacaccagggaagccctgcagcaagccatcctggagtctgtgaacggactg
aaagctctctctgtcggtcgagttgttattgtcaacaacaagcagcatctcaatgctctg
ggagttattctacaggtatccaatgacgcagtgaatcgcaccttcactgctctcatcatc
tgtgagaagggaaacgaggaaggggatggaaaaggcgaggacaacgcctctttcccacac
ctctacaacacagctctgtttatacctgaaggcccctgcagccacacggtgcagaagtta
aaacttcaggacatctctgccatcactgtaaaaacccttaaagtgattcctgacagaatc
atcgataattacaacaagaggcaacaaccacggttcaggaacgaccctcctggccaggcc
atttccacagcaacacaggagctgttgcgattggccgaggcaaatccgagcggcatggcc
accctggatccagtgaatgacctgcagctaaagagcgtggacgtggtggaggggtccatg
aggctccgtgcgcttcaggacagcctgagggacttcaactgcatccactcacccaccttc
gcagagcagtttgctcgaattaaggagaggatgagtgtgcaggaggagcttgaccggctg
ctgttcctggtatcggaccagtccctcaccctgctgcctgagtatcaccagaggatccag
gtcctccagtcgctgcagtacatcgacagcagcggggcggtgcagctgaaaggccgagtg
gcctgtcagatcagtagccatgagctgctgctgactgagctgctgttcgagaacgtcctg
agcccactggcgcctgaagagagcgccgccctgttgtcctgcctggtgttcacccagaac
acgcagatggagccgcatatcaccaacacgctaaaggagggcatcgatcgtgtgctgtct
gtggcccagcgaatcggacagctgcagcgcgaatgtgggatagcgcagaccgccgaggag
tttgtaggccagttcaagttcggcttgactgaggtggtgtactgctgggccagaggcatg
ccttttgctgagattgcgctactcacagacgtccaggagggcactgtggtccgctgcatc
cagcgcctggatgaggtgctaaaggaggtgcgacaagccgcacgcatcgtgggagactcc
gtcctagggagcaagatggagagggcctcgttggccatccgcagggacatcgtcttcact
gcctccctctacactcactga
DBGET
integrated database retrieval system
