Cyprinodon variegatus (sheepshead minnow): 107086365
Help
Entry
107086365 CDS
T06110
Name
(RefSeq) Down syndrome cell adhesion molecule-like protein 1 homolog
KO
K06768
Down syndrome cell adhesion molecule-like protein 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cvg04515
]
107086365
Cell adhesion molecules [BR:
cvg04515
]
Immunoglobulin superfamily
DSCAM family
107086365
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Ig_3
I-set
Ig_DSCAM-DSCAML_C
Ig_2
ig
V-set
C2-set_2
Pur_ac_phosph_N
Interfer-bind
Ig_5
fn3_2
Ig_6
V-set_CD47
ChitinaseA_N
Receptor_2B4
Motif
Other DBs
NCBI-GeneID:
107086365
NCBI-ProteinID:
XP_015232740
Ensembl:
ENSCVAG00000017405
LinkDB
All DBs
Position
Unknown
AA seq
1642 aa
AA seq
DB search
MPSFATLRSLFICSQQKLLLSLLTIKGIKRAFWTWEDAKTKALIEIWVEDGPPRIRPMKN
ITAVAGRNTFINCRVIGYPYYSINWYKEGILLPDNHRQVVFENGTLKLSDVQKGMDEGAY
VCSVLIQPQLFITQTVYVTVKVPPLIQPFDFPPTSIGKLMYIACVVASGDMPIRITWRKD
GQEIVPSSGITIDTKEFMSSLQISKVSLKHNGNYTCIASNDAASVSTERQLTVTVPPRFV
VQPNNQDGIYGKSAILNCSVDGYPPPKVMWKHARGALAGIGNPQQYHPVPLTGRIQIMTN
GSLLIRHVLEEDRGFYLCQASNGVGSDISKSMVLTVKIPAMITSHPNTTMAKKGHVKELN
CTARGEWPIIIRWERGDTVIDPDRNPRYSITTSPNEKTDEVLSTLKLKPAEREDSVFFSC
HAINSYGEGRGLIQLTVQEPPDPPELEVREVKDRSMNLRWTQRFDGNSVITSYDIEYKNK
TDTWELKHATRNISPTNNQANIVDLHPASVYSIRMFSYNAIGKSEASKELTISTEEAQPD
GPPMDVILQPVTSQSIRVTWKAPRKELQNGVIRGYQIGYRENGPGSNGQYSIVEMKATGD
SEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLEDVPSQPPQNVRAISVTSDQA
VINWAEPPRMTLHGVLKGYRVVFWAVFPDGEWSEMQNITTTKEQVELKGLEKFTNYSIQV
LAFTQAGDGVRSNVLYIQTREDYPGPPAGIKAVPSSASSVVVSWLPPHKPNGIIRKYTIY
CSSPGSGQPLPSEYEANPELLLYRITHLNHRQQYLIWAAAVTTAGRGNFSDKVTVEPAAK
APAKILSFGGTVTTPWMKEVRLPCSSVGEPTPSIKWTKDSEDTAIPVSVDGQRLILTNGT
LVLRSVKAEDSGYYTCTATNTLGFDTIIVNLLVQVPPDQPRLTVSTTSTSSITLAWIPGD
NGGSSIRGFVLQYSVDNTEEWKDVFISSTERSFKLENLRCGTWYKVKLAAKNSVGAGRIS
EIIEAKTHGREPQFNKDQPIFTYVNSTHARLNLQGWASGGCPITSVTLEFRPKGMWTWQN
VRTNATTDVFLAELREGTWYELKMKACNSAGCGNQSSQFSTPNYDGSTIPPIKSPLEKND
DVKKLFSIGCPVILVTLGVALLFVAIRKKRKEKRLKRLRDAKSLAEMLISKNNRSFDTPV
KGPPQGPRLHIDIPRVQLLIEDKEGIKQIGDDKATIPVTDTEFNQTGNPQSFCTGVSVHH
PALIQNTGPLIDMSDIRPGTNPVSRKSVKSAHSIRNRYSSQWTLTKCQASTPARTLTSDW
RTVGSQHGITVTESDSYSASLSQDTDKGRNSMVSTESASSTYEELARAYEHAKLEEHLQH
AKFEITECFISDSSSDQMTTGTNDNADSMTSMSTPSEPGICRFTASPPKPQDYDRGKNVA
VPIPHRAKSDYCNLPLYMKSDPFFRKQSEHHDPCPVVPPREASIRGLAQRAYHSQGRHVT
MDSTKQQALAVGHSGLSNLTSSGASSGGATGGGGGGSGGLSASSSSSTLPQRTLTMPSSS
ASAAQSAAAAAVATAAAAGASSSSGGGAVGATGGTPGGASSSSSKMGGSRDSLLESSSSG
LGRLQKQRDGASGAYSKSYTLV
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atgcccagctttgcaactctaagatctctcttcatctgttcacagcaaaaacttcttctc
agcctattaacaataaaaggcatcaaaagagcgttttggacctgggaagatgccaagacc
aaggctctaattgaaatttgggtggaggatggtcctccaagaataaggcctatgaagaat
attacagcggtggcaggaagaaacactttcataaactgtagagtaattgggtatccttat
tactcgatcaactggtacaaagagggaattctgcttcctgacaaccatcgtcaggtggtg
tttgagaatgggacacttaagctcagcgatgttcagaaaggcatggatgagggtgcctat
gtgtgcagcgtgctgatccaaccacagctattcatcacacaaactgtttatgtcactgtc
aaagttcccccgctgatccaaccatttgactttcccccgacctccattggtaaattgatg
tacatcgcctgtgtggtggcatcaggagacatgccaatccgcatcacatggcgtaaggat
ggccaggagatcgtaccctcatcagggatcaccattgatacaaaagagttcatgagttcc
ctgcagatttccaaagtgtctctaaaacacaatggcaactacacatgcattgccagcaac
gatgctgcaagtgtcagcacagaaaggcagctcacagttacagtcccgccacgattcgtt
gtacagcccaacaaccaggatgggatctatggaaagtcagcaatcttaaactgttctgtc
gatggatatcctccccctaaagtgatgtggaagcatgccagaggagcactagctgggatt
ggaaacccacaacagtaccacccggtccctctgacaggtcgtattcagatcatgactaat
ggctctctgctaatcagacatgtcctggaggaagatcgaggtttctacctgtgtcaggcc
tccaatggtgtgggttcagacatcagcaagagcatggtcctaactgttaaaatcccagca
atgatcaccagtcatcccaatactaccatggcaaagaagggccatgtgaaggagctgaac
tgcacagccagaggagaatggcccatcatcatccgctgggaaagaggtgacacagtgatt
gacccagatcgcaaccctcggtactccataaccacaagccccaatgaaaagacagatgag
gtgttgtctacactcaagctaaagccggccgagcgtgaggattcagttttcttctcttgt
catgccatcaactcttatggagaaggacgaggccttattcagctcactgtgcaagagcct
ccagaccctccagagctagaggtgcgagaagtgaaagatcgtagcatgaatcttagatgg
acacaaagatttgatggaaacagtgtcattacctcttatgacattgaatacaaaaacaag
acagatacttgggaactgaaacatgccactcgaaatatctctccaacaaacaatcaggcc
aacatcgtggaccttcaccctgcctctgtctacagcatccgtatgttttcctacaatgca
ataggcaaaagtgaggccagtaaagagctcaccatcagcaccgaagaagcacagcctgac
ggtcctccaatggatgtaatccttcagccagtgacctctcaaagtatccgagtcacttgg
aaggctccaaggaaggagctacagaatggggtaatacggggttaccaaatcggttacaga
gagaatggccctggcagcaatggccagtacagtattgttgagatgaaagccactggggac
agtgaggtctacaccttagacaacctgaagaagtttgctcagtatggtgtggtcgtccag
gccttcaacagagcaggcacagggccttcaagttcagaaatcaatgcaacaacactggag
gatgtgcccagtcagcctcctcagaatgtacgagccatctctgttacatcagaccaggca
gtgatcaactgggcagagcctcctagaatgactctccatggtgtattaaaaggatatcgt
gttgtgttctgggctgttttcccagatggagagtggagtgaaatgcaaaacataacaacc
acaaaagaacaagtggagcttaaaggcctggaaaagtttaccaactacagcatccaggtg
ctggccttcacccaggcaggggatggtgttcggagcaacgtcctgtacatccaaacccgt
gaagactatcctggacccccagctggaattaaagcagtgccctcctctgccagcagtgtg
gtagtgtcttggttaccccctcacaagccaaatggaattatccgcaagtacacaatctac
tgctccagccccggctctggccaaccgcttccaagtgagtatgaagctaatccagaactc
ctactttatcgaatcacccacctgaaccaccgacagcagtacctgatctgggctgctgct
gtcaccactgcgggccgtggaaactttagtgacaaagttaccgtggagccagctgccaag
gctcctgccaaaatcctatcatttggcggtacagtaaccactccatggatgaaggaggtg
cgtctgccttgtagttctgtgggtgaaccaacaccttcaataaaatggaccaaagacagt
gaggatacagcgatcccagtgtctgtcgatggacagcgcttaattctgaccaatgggaca
ctagtgctgcgatctgtgaaagctgaagactctggttattacacatgcacagccaccaac
acgttgggcttcgacaccataatagtcaatcttttagtgcaagtgcctccagatcagcct
cgtttgacagtatccaccacctccacctcttctattacccttgcctggattccaggggac
aatggaggcagctccatcagaggttttgtgctgcagtattcagtagataacacagaagaa
tggaaggatgttttcattagttcaactgagcgttcatttaaacttgagaacttgcgctgt
gggacctggtataaagtcaagttggctgctaagaacagcgttggagctggacgcataagt
gagatcattgaggcgaaaacccatgggcgagaacctcagttcaacaaggaccagcctatc
ttcacctacgttaactccacccacgctcgcctcaacctgcagggttgggccagtggaggc
tgtccaatcacctctgtgacactggaatttagaccaaaaggtatgtggacatggcagaat
gtccgtaccaacgccaccacagacgtgtttttggcagaacttcgtgaaggcacctggtat
gagttgaagatgaaggcatgtaacagtgctggctgtggcaaccagagttctcagttttca
acaccaaactatgatggcagtacgattcctcctattaaatcccccttggaaaaaaatgac
gatgtgaagaaattattttccattggctgtcctgtgattctggtcacccttggtgttgca
ctgctgtttgtcgccattcgcaagaaacgtaaagagaagagactgaagagactacgggat
gctaaaagtctggcagagatgctcatcagtaaaaacaaccgcagctttgacacaccagtg
aaaggacctcctcagggcccacggctacacattgacatccccagagtgcagctgctaatt
gaggacaaagaaggcatcaagcaaattggagatgacaaggctactattcctgtgacagac
acagagttcaaccaaactgggaatcctcagagcttctgcactggtgtttctgtccatcac
cctgccctcatccaaaacacaggtcctttgatagacatgtctgacatcagaccaggaacc
aacccagtgtcacggaagagtgttaagtcagcccacagcatcagaaaccgatactccagt
cagtggactctgaccaagtgtcaggcttctacgccagcccgcactctcacttcagactgg
cgcacagttggttctcagcatggcatcactgtcacagagagtgacagctatagtgccagc
ctctcacaggacacagataaagggcgcaacagcatggtgtccacagagagcgcctcctcc
acctatgaggaactggcaagagcctacgagcatgcaaagctggaggaacacctgcaacat
gccaaatttgagattacagagtgctttatatctgacagctcatctgatcagatgaccaca
ggtaccaatgacaatgcagacagtatgacgtctatgagcacaccatcagagcccggtatc
tgccggttcactgcctcaccacccaagccccaagactacgatcgtggcaagaatgtagcc
gtgcccattccacaccgagccaagagtgactactgcaaccttcccctctacatgaagtca
gatccttttttccgaaagcagtcagaacatcatgacccatgtccagtggttccaccacgc
gaggcctctattcggggtttggcccaacgggcataccacagccagggccgtcacgtgact
atggactctacaaagcagcaggctctggccgtcggccattccgggctttcaaacctcact
tcttctggggcatcctctggaggagcaacaggaggcggcggtggaggaagtggagggttg
tctgctagctccagcagctccacccttccccagcggactctcactatgcctagctcctct
gcctctgcggctcagagtgctgctgccgctgctgtagccactgctgctgcagcaggagca
tcatcttcctctggcggtggcgcagtaggggccacaggtggaactcctggaggagcatct
tcgtcctcctccaaaatgggaggttctagagactctctcctggagagcagctcttcggga
ttaggcagactacagaagcaacgggatggggcatcaggagcctactccaagtcctataca
cttgtgtag
DBGET
integrated database retrieval system
