Cyprinodon variegatus (sheepshead minnow): 107086540
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Entry
107086540 CDS
T06110
Symbol
nfkb2
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04010
MAPK signaling pathway
cvg04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
107086540 (nfkb2)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
107086540 (nfkb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cvg03000
]
107086540 (nfkb2)
Transcription factors [BR:
cvg03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
107086540 (nfkb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_4
Ank_3
Ank_5
Death
CIS_TMP
T3SS_basalb_I
Motif
Other DBs
NCBI-GeneID:
107086540
NCBI-ProteinID:
XP_015233023
LinkDB
All DBs
Position
Unknown
AA seq
879 aa
AA seq
DB search
MAGALRMTEAPFMNYDSEMISNFLPYDFTPMDIKMEPYVTETAHGPYIQIIEEPKQRGFR
FRYECEGPSHGGLPGASSEKNRRTYPTVKINNYVGHARVEVQLVTHTDPPRVHAHSLVGR
HCNENGTCTLDIGPNDLTASFSNLGILHVTKRGVVEVLTKRLREERRRQKGIHCSLTDGE
ESDVLKEAKELGKAMDLNIVRLRFTAYLQDSNGGFTRALKPVVSNPIYDSKSPNASNLKI
SRMDRTCGSVLGGDEVFLLCDKVQKDDIEIRFYEEDEEGCWEAFGDFSPTDVHKQYAIVF
KTPPYHSAEIDRPVTVFLQLRRKKAGDSSDPKQFTYIPQIQDKEEVLRKKQKPLPHYDSW
RGGGGGRGRDGGAGTGGFGGAAGGAGFQFQQMNGGTGGGAFFTGGFTGFSSGGGAQMSGS
APQQQGEALQQQLIRIAASLSNRVSQSARQTAAALLQYCSTGDPRVLLALQRHLCGVQDN
NGDTPLHLAIIHQQSSVTQQLIQTLLSSQQNAVLNTCNHLQQTPLHLAVITRQLKVTEML
LRAGADPSSVDKDGRSPLHLAALAGDTASLRLLLAHLGERHAHLVNTPDYHGLQPLHLAV
RRDGERCLRLLVESGAKINAPEQKSGNTALHLAVRENLFKVACTLITELKADVNACTFGG
NTPLHLAASLGSPTLCSMLVAAGADKNMENDEPLCFSSSDEEQDEPIRERGERSQPTSKR
PGGGHTPLDLATCQKVKNLLNSRQSQEASRHAGKKIRTSSEDAERSGLDEDTLSRLVEVL
SVGDVPWMKLAEKLGMMTLTHLYQDSPTPCQNLLQHYKLGGGPVEGLVDALQSLGLTEGV
RLLRNTEQRHDKLGSDATVDSGFSSQPMEEQQEEEVTNQ
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atggctggagctctgaggatgacggaagctccgttcatgaactacgacagtgaaatgatt
tctaacttcttgccgtacgacttcaccccgatggacataaagatggagccgtacgtgacg
gagacagctcatggtccgtacatccagatcatcgaggaacccaaacagagggggttccgc
ttccgttatgagtgtgagggtccgtcccacggcgggctcccaggggcctccagcgagaag
aaccgcagaacctacccgaccgtgaagatcaacaactatgtgggtcacgcacgggtggag
gtccagctggtgacccacaccgacccgccccgggtccacgcccacagcctggtgggacgc
cactgcaacgagaacggaacctgtacgctggacatcggacccaacgacctcaccgcctcg
ttcagtaacctgggcatcctccatgtgaccaagaggggcgtggtggaggtgctgaccaag
cgtctgagggaggagcggcggcggcagaaagggatccactgctccctgacagacggcgag
gagtcggacgtcctgaaggaggccaaggagctggggaaggccatggacctgaacatcgtc
cgcctgcgtttcaccgcctacctgcaggacagcaacggcggtttcaccagggcgctgaaa
cccgtggtgtccaaccccatctacgacagcaagtctccaaacgcctccaacctgaagatc
tcccgcatggatcggacctgcggttccgtcctgggaggagacgaggttttcctgctgtgt
gacaaagtgcagaaagatgacatagagatccggttctacgaggaggacgaggaggggtgc
tgggaggcgttcggggacttctcacccaccgacgttcacaaacagtacgccatcgtgttc
aaaacgccgccctaccacagcgccgagatcgaccggcccgtcactgtcttcctgcagctc
aggaggaagaaggccggcgacagcagcgaccccaaacagttcacctacatccctcagatc
caagacaaagaggaggtgctgaggaagaagcagaagcctctgcctcactacgactcctgg
agaggaggaggaggaggaagaggacgagatggaggagcaggaaccggtggctttggagga
gctgcaggaggagcagggttccagttccagcagatgaacggtggaacaggaggcggagct
ttcttcacaggaggcttcacagggttcagctcagggggaggagcccagatgtcaggctcc
gccccccagcagcagggggaggctctgcagcagcagctgatccggatcgccgccagcctc
agtaaccgggtctcccagagcgcccggcagacggccgccgccctgctgcagtactgcagc
accggggacccccgcgtcctgctggccctgcagagacacctgtgcggcgtccaggacaac
aacggagacacgccgctgcacctggccatcatccaccagcagagctccgtcacccagcag
ctgatccagacgctgctgagcagccagcagaacgccgtcctcaacacctgcaaccacctg
cagcagacccccctacacctggccgtcatcacgcggcagctgaaggtgacggagatgctg
ctgagggcgggggccgaccccagctcggtagacaaagatggccgcagccctcttcacctg
gcggcgctggccggagacaccgcctcactgcgccttctgctggctcacctgggagaacgc
cacgcccacctggtgaacacgccggactaccacggtctgcagccgctgcacctggcggtc
aggagggacggcgagcgctgcctccgcctgctggtggagagcggagccaagatcaacgcc
cccgagcagaagagcgggaacacggcgctgcacctggccgtcagagagaacctgttcaag
gtggcgtgcacgctcatcacagagctgaaggctgacgttaacgcctgcaccttcggagga
aacacgccgctgcacctggcagccagcctgggctcgccgacgctctgctccatgctggtg
gctgcaggtgccgataagaacatggagaacgacgagccgctctgcttcagctcctcggat
gaagagcaggacgaaccaatcagagagcgaggagagcgcagccagccaaccagcaagagg
cctgggggaggacacacccctctggacctggctacctgtcagaaggtgaagaatctgctg
aattccagacagagccaagaggcgtctcgacacgctggcaagaagatccggaccagcagt
gaagacgcggagcgctccgggctggacgaggacaccctgtcccggttagtggaggtcctg
agtgtgggggacgttccctggatgaagctggccgagaagctgggaatgatgacgctgacc
cacctgtaccaggacagccccaccccctgccagaacctgctgcagcactacaagctgggt
ggaggtccggtggaaggtctggttgatgctctgcagtctctgggtctgactgaaggagtc
cgactgctgaggaacacggagcagcgacacgacaaactcggctcagacgccacggtggac
agcggcttcagcagccagccaatggaggagcagcaggaggaggaggtgaccaatcagtga
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