Cyprinodon variegatus (sheepshead minnow): 107086931
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Entry
107086931 CDS
T06110
Name
(RefSeq) usherin-like
KO
K19636
usherin
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cvg03037
]
107086931
Cilium and associated proteins [BR:
cvg03037
]
Primary cilia and associated proteins
USH complex and associated proteins
107086931
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
fn3
Laminin_G_3
EGF_LMN_ATRN
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
107086931
NCBI-ProteinID:
XP_015233708
LinkDB
All DBs
Position
Unknown
AA seq
1687 aa
AA seq
DB search
MTVITYSHSLGKLQNKIPVLEDPASFRTVPEPVVKIHKPRTVLNSLKIQELHGVKCIKVN
EKNDNKEKNILRKLQTMGQDVHICRKDHRKYVKGCVKLANEEDDSTDLAGICSFTKKGKD
ILQIYNRIQNKQLRLVFKLADRSANGGKIKMNFMRLGQPKVQLWLCLLILSFCAKPVSSQ
GHFPRMENVAAFKPVSTLPARSTCGFPKQSSYCQSPSSRDELHLCFEAMCVQECPYRSST
PPYAQLLFAPQRGTCVTEDVVDTHPGTETAAGSTTSPDGLSVVAQSVLFQPSEDGCLVTP
PSQAIGPRGSLTLAVWLKPSSNGEMMLLEKSSEKRLVFSLTVSERAVTFRYNATNGRTSP
SVSFRTEGRLQLNRWTHLTLQIYDRHASLFLDGLEDDQTPFDTKHLMSPLSDIDEYGDMW
VGLSSNGSNQFIGRMQDFRYYPTTLTNREIVQLYSGVMPKLHVHSECRCPSSHPRVHPLV
ERYCIPNAVEDTTNDRVLRLNINAHPLSYINDQDMGTMWLSKVMSLQELDDGITITVDLA
NGQYQVFYVIVQFRGPLPESVLIQRQKLPFSEQEMDMTEQSWLDWQYMARNCNVFDMQNN
GPLPRPDSVNCQQMPSDVPLLGGNITFSLLTTQPHPRPGYNDFYKTPGLQEMVLASQVRI
HMKGQYHTGADGVDQRHRHFAISEITISGRCECHGHADQCDTSVTPYRCLCLPESHTVGN
NCERCAPLYNDKPFRSGDQLQPMNCRLCQCYGHAVSCHYDVLADEHPHEHYRGGGGVCDH
CIHNTTGKNCEQCVSGFFRMQDFDPTSAHVCQPCNCNPAGTVQGTTECAQIGGQCHCKVA
VTGRQCTHCLPGWYGLDATNPNGCTSCNCSDQGTMSPSTVEVSICNQDTGQCHCKPHVTG
LSCDRCEFGYWNLSHPDGCIPCDCDPLGSLSPFCEPNGGQCECKPGVGGRQCDLCGRGLY
GLTIEGSCAPCNCSLDGTVPGTNCDPYTGQCVCKEYVQGHHCDSCRRGYHTLEHRNSLGC
LPCLCDISGTLSEGVCSKKTGQCPCKEGVEGAHCTSCIPNYYNSSLDHESFSQGCVPCIC
DPRGTVTGSTCDSNTGQCVCIPSRQGKDCSSCRPGFYLSPDHSMCLECDCHPMGAMQLSC
ESQNGQCVCAHPSVGGRRCDQCRENFFGFNPGLGRCQPCACDPFGSLNSSCDPDTGVCTC
KLLVTGDKCDSCQPGAISFDPENPFGCSKAPSQQPAPLGLAPSYSSIYLSWHPPDSPNSH
RLNYTLMRDGLSVHTIQSHFPFKLESFEDGNLFPFTNYSYWLITANVAGETISASTSYQT
LGAPPSAEQLVLNLLGRPGPYSASFNWSIPRNDKGPVQRFVLSSVGSSNEAEPVIHYTGL
STEAVASGLKSFTQYSVTLKACSSGGCTSGPPLSILTAAAPPQNQSAPRINATGPHTLHA
FWEPPSQPNGVITKYELYLRGPLEMNQVSSFNSERRVFFSSGWLDPSVVPQPKPAKRSSL
SAPKNSTIIEGLQAFSVYQLRVVSINRAGNVSSDWTTAHTLEGVPEFVAPPDVSALSSSC
LNITWNSTEGYGIIARGQVMEYRVNLLTEQFSNPYAPPVVSQVLHRMGPSSLPAYIVQGL
KPYHVYNFTITLCTRMGCITSTPSSGRTLPAVPTGLSPPRLRPLNETTIQIDWDPPDQLN
GPSPLYQ
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgacagtcatcacttattcacacagcttggggaagcttcagaacaaaattccagttctt
gaagatcctgcatccttcaggactgttccagaacccgttgtgaagatccataaacctaga
accgtgctgaactctttaaagatccaagaactgcatggagttaaatgtataaaggtcaat
gaaaagaatgataataaagaaaaaaatattctaaggaagctccaaacaatgggccaagat
gttcacatttgcagaaaagaccatagaaaatatgtcaaaggatgtgtcaagttggctaat
gaagaggatgacagcacagatctcgcagggatatgttcgtttacaaaaaaggggaaggat
attctgcaaatatacaacaggatacaaaacaagcagctcaggcttgtgtttaaattggca
gatcgcagcgcaaatggagggaaaataaagatgaatttcatgagacttgggcaacctaag
gtccagctctggttatgtcttcttatcctgagcttctgtgctaaacctgtttcatcacag
ggacatttcccacgaatggagaatgttgcagctttcaaacctgtgtccacactgccggct
cgatccacctgtggttttccaaagcagagcagctactgccaatcaccttcctcacgggat
gaactgcatttgtgttttgaagccatgtgtgtccaggagtgcccctatagatcctccaca
ccaccgtatgcgcaactgctcttcgctccacaaaggggtacctgtgtaactgaagatgtg
gttgacactcatcctgggacggaaacagcggctggaagcacaacaagtccagatggactt
tctgttgtagctcagagtgtactgtttcagcccagcgaagatggatgtctggtcactcct
ccttcacaggcaataggaccacgtggttcccttactttggctgtctggttaaagccaagc
tccaatggagaaatgatgttgctggagaaaagctcagagaagcggttggtcttttctttg
acagtatcagagcgagctgtaaccttccgatacaatgcgaccaatggtcggacctctcct
agtgtaagcttcagaacagaaggacggctacagctgaacagatggactcatcttactttg
cagatctacgacaggcatgcaagtctttttcttgatggacttgaagatgaccaaacaccg
tttgacacaaaacatctgatgagcccactttctgatatcgacgagtatggtgacatgtgg
gtgggacttagctccaatgggtctaatcagttcattgggcggatgcaggactttagatat
tatcctactacactgaccaacagagaaatagtccagttgtattccggagtcatgccaaag
ctgcatgtccactctgagtgccgctgtccttccagccatcccagagtacatccattagtt
gagagatactgtattcctaatgctgttgaggacaccactaatgacagggtcttgagacta
aacatcaacgctcatccacttagttacattaatgatcaagatatgggcaccatgtggctg
tctaaggtcatgagtttgcaggagctagatgacggaatcactattacagtggatttggct
aatggacaatatcaggtgttctacgttatagtgcagtttcgggggcctttgcctgagtca
gttttgattcagagacagaagcttcctttttctgagcaggagatggatatgacagagcaa
tcctggttagattggcagtatatggccagaaactgcaatgtttttgatatgcagaacaat
ggaccattaccaagaccagactctgtcaactgccagcaaatgcccagtgatgtgccactt
ttaggaggtaatatcacctttagtctcctgaccacacagccacatccgaggccaggatat
aatgacttctataaaactcctggcctgcaagagatggtgctagcttcccaggtcagaata
catatgaaaggacaataccacaccggagcagatggagtcgaccagcgacacagacacttt
gccataagtgagatcacaatcagtggcagatgtgagtgtcacggccatgcagatcagtgt
gacaccagtgtgaccccttaccgctgtctgtgtctacctgagagccacaccgtcggaaat
aattgcgaacgctgtgcaccactctacaatgacaaacccttcaggtcaggtgatcagctc
cagcctatgaactgcagactctgtcagtgttatggtcatgctgtttcttgtcattatgat
gtccttgctgacgagcatccacatgagcactatcgtggaggaggaggagtctgtgaccac
tgcattcacaatactacaggaaagaactgcgagcagtgtgtaagtggattcttcaggatg
caggattttgatccaacctcagctcatgtgtgtcagccctgcaactgtaaccctgctgga
actgtccaaggtaccacagagtgtgcccagattggaggacagtgtcactgcaaagttgca
gtaacaggccgtcaatgcactcactgtttgcctggttggtatggtctcgatgctacaaat
ccaaatggctgcacatcctgtaactgtagtgaccaaggaaccatgagcccctcaacagta
gaagtttccatctgcaaccaggacacagggcagtgccactgtaaaccccatgtcacaggt
ctgtcatgtgaccgctgtgagtttggatattggaacctttcccacccagatggctgcatc
ccatgtgactgtgaccctttgggttccctcagtccattttgtgagcccaatggggggcag
tgtgagtgcaagcctggggtgggaggccgtcaatgtgacttatgcggtaggggattgtat
ggtttaacaatagagggatcctgtgccccctgcaactgctcacttgatgggacagtacct
gggacaaactgtgatccatacacaggccagtgtgtatgtaaggaatatgtacaaggccat
cattgtgattcatgtcgtcgtggttaccacacccttgagcatcgcaacagcctgggctgc
ctgccgtgtctatgtgacatcagtggaactttgtcagagggtgtgtgcagtaagaagaca
ggacaatgcccctgcaaggaaggagtcgagggagcccactgtaccagctgtattccaaac
tactataatagtagtttggaccatgagagtttttcacagggctgtgtgccatgtatctgt
gaccccaggggaacagtgacagggtcaacatgtgacagcaacacggggcaatgtgtttgt
atcccatcgcgacaaggaaaggactgcagcagctgccgacctggcttctacctcagccca
gatcatagcatgtgtttggagtgtgactgccatcctatgggagcaatgcaacttagttgt
gaaagccagaatggacagtgtgtctgtgctcatccctcagtgggaggaagacgctgtgac
caatgtcgtgagaacttctttggatttaaccctggtctgggaagatgtcagccttgtgct
tgtgacccattcggcagtctcaatagttcatgtgatccagacacaggtgtgtgtacatgt
aagctgttggtaactggagataaatgtgattcatgccagcctggagccatttcatttgat
ccagagaaccccttcggatgcagcaaagccccttcccagcagcctgcaccacttggtctg
gctcctagttactcctcaatctatctctcgtggcatccacctgactccccaaattcacac
agactcaactacactctcatgagggatggactctcagttcataccattcaaagtcatttt
ccatttaaactggaatcctttgaagatggtaatttgtttccatttaccaactactcctac
tggctcataacagcaaatgtggctggtgagacaataagtgcatcaacctcctaccagact
ttaggagcacctccttctgcagagcagcttgtcttaaacctccttggacgaccaggtcca
tacagtgcaagctttaactggagcataccgagaaatgataaaggtccagtccaaaggttt
gttttatcctcagtggggtcatctaatgaagcagagccagttattcactacacaggttta
tctacagaggctgtggctagcggtttaaagtcctttacgcagtactctgtaacattgaag
gcatgctcttctggcggttgcacctctggcccaccattgtctattctcacagctgctgca
cccccacaaaaccagtctgctcccagaatcaatgctacaggacctcatacgctgcatgct
ttttgggagccccctagtcagcccaatggtgttattacaaagtatgagttgtatctccgt
gggcctttggaaatgaaccaagtgtcaagttttaactctgagaggagagttttcttcagc
tctggttggctggatccaagtgtcgtcccacaaccaaagccagccaagaggagttcattg
tctgcccctaaaaatagtaccatcatagagggtcttcaggcattttcagtttatcagctg
agagttgttagcatcaacagggctggaaatgtttcatcggattggaccactgcacacacc
ttggagggagtcccagagtttgtggctcctccagatgtatctgcactatcatccagctgc
ctcaacattacatggaactctactgagggttatggcatcattgccagagggcaggtcatg
gagtacagagtcaatttactaactgagcaattctccaatccctatgctcctcctgttgtc
agtcaggtcttgcatagaatggggccatcatcactgcctgcttacatcgttcaaggattg
aaaccgtaccatgtgtacaacttcactatcacgctgtgcacaagaatgggttgcattaca
agtacacccagctcagggcggaccttaccagcagtgcctacaggactgagtccacctcgt
ttacgtcccttaaatgaaaccaccattcagatagattgggatcctccagatcaacttaat
ggaccaagcccactgtatcag
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integrated database retrieval system
