Cyprinodon variegatus (sheepshead minnow): 107087148
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Entry
107087148 CDS
T06110
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107087148 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvg03041
]
107087148 (prpf40a)
Spliceosome [BR:
cvg03041
]
Complex A
U1 snRNP components
U1 related factors
107087148 (prpf40a)
Complex B
107087148 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
107087148
NCBI-ProteinID:
XP_015234047
Ensembl:
ENSCVAG00000004275
LinkDB
All DBs
Position
Unknown
AA seq
883 aa
AA seq
DB search
MSSTETNNGPNQAAPYAAVPPAAIPPPYMGPPGIPPHFPPMGIPPMAQRPPSMTPMPPGI
MPPGIMPPMAAPPMAQMPSMIPPMMPGMMLPPRIPAATVQPTGPPGVDSTVPTAAAPGTT
SATNGSQPEEQPKKKSVWTEHKSLDGKTYYYNTETKQSTWEKPDELKSPAEQMLSKCPWK
EYKSDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEESGTTETTAPGTTAAPAVQADKI
TVTTATVKEVETSAAVPEEQPSQVTVHQAAEVKAVEAPVTSTESPVVTESKPSVEVKEEE
RPELQKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKLIINDPRYSALPKLSEKKQ
AFNAYKVQTEKEEKEEARIKYKESKEKFQRFLENHEKMTSTTRYKKAEQMFSELEVWSCV
PERDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLD
NPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEDKQKTLLRERRRQRKNRESFQKFLD
ELHDHGQLHSMSSWMEMYPTLSSDMRFSSMLGQPGSTPLDLFKFYVEDLKARYHDEKRII
KDILKDKGFLVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEE
ARKMKRKEAAFKAMLKQATPPLEPETTWEEARERFLKEAAFEDVTLESERKRIFKDFMHV
LEHECQHHHSKTKKHSKKSKKHHRKRSRSRSASESEDEEYHKKKKRSQSKSPSERSSSGE
SERSYKKSKKHKKKGKKRRHKSASPDSEGEKKGRERDGKRERDSEKDKENDKSRGKSRSE
SKQKSPKRKAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgacggagacaaataatggcccgaaccaagcggcaccttacgcagcagttccc
cctgcagcgataccgcctccatatatgggaccaccaggaataccacctcacttcccaccc
atgggaataccccctatggcacagcggcctcccagcatgactccaatgccacctggaatc
atgccaccaggcataatgcctccaatggctgctccaccaatggcacagatgccaagcatg
ataccacccatgatgccgggaatgatgctaccccctcgtattccagctgcaactgtgcaa
ccgacaggacctcctggtgtcgactcgacagtccctacagcagctgctcctggaacaacg
agtgcaacaaatggctctcaaccggaagaacaaccaaagaagaaatctgtgtggacagag
cacaaatctttggatgggaaaacttattattacaacacagagaccaaacaatccacatgg
gagaagccagatgaactgaaatctcctgcagagcaaatgctgtctaaatgcccctggaag
gagtacaaatcggacacaggaaagccttattattacaactctcagacaaaggagtccaga
tggaccaaacccaaagagttggaggatctggaagctatgatcaaggcagaggagagtggg
acaacagagacaacggcccctggaaccactgcagctcctgcagtgcaagctgataaaatt
acagtcactacggcgacggtaaaggaggtggaaacttctgcagcagtcccagaggagcag
ccgtcccaggtgaccgtgcatcaagcagctgaggtcaaggctgtagaggcacctgtgact
tccacagagagtccagtcgtcacagagagtaaacccagtgttgaagtcaaagaagaagaa
cgacctgaacttcagaagaaaacgtataagtggaacacaaaagaagaagctaagcaggcc
tttaaagagctgctgaaggagaagggtgtttcatcaaactcctcctgggaacaggccatg
aaactgattatcaatgatcctcgctacagtgcactccccaaactgagcgagaagaaacag
gcgttcaatgcctacaaagtccaaaccgagaaagaggaaaaggaagaggcaagaattaag
tacaaggagtccaaagagaagttccagagattcttggagaaccacgagaagatgacgtcc
accaccagatacaagaaagcagagcaaatgttcagtgagctggaagtttggagctgcgtt
cctgagagagaccggctggagatctatgaggatgtgttgttctacctggctaaaaaggag
aaggaacaagccaaacagctgaggaagaggaactgggaagctctgaagaacattttggac
aacatggctaatgtgacctatcgcaccacctggtctgaggcccagcagtatctgcttgat
aaccctacgtttgctgaggacgaggagctgcagaatatggataaagaagacgccctcatc
tgttttgaagagcacatccgtgctctggagaaggaggaggaggaagacaagcagaagact
cttctcagggaaagaagacggcagcgtaaaaacagagagtccttccagaaatttctggat
gagctccacgatcatggccagctccactccatgtcctcctggatggagatgtacccgacc
ctgagctctgacatgcgcttcagcagcatgctgggccagcctggttctactcctttggac
cttttcaaattctatgtggaagacttgaaggcccgttatcatgatgaaaagagaattatc
aaagacatcctgaaggataaaggcttcctggtggaagtgaacaccagctttgatgacttt
ggatccgtcatcagctccgacaagagagccactactctggatgctggaaacataaagctg
gccttcaacagtttactggagaaggcggaggccagagagagggagcgagagaaggaggaa
gcccggaagatgaagaggaaagaagcagcgttcaaagctatgctgaagcaggccacgccg
ccgctggagccagaaaccacatgggaggaagccagagaaagattcctaaaagaagccgcg
ttcgaagatgtgacgctggagtcggagcggaaaaggatatttaaagatttcatgcatgtc
ctggagcatgaatgccagcatcaccactccaagacaaagaagcattcaaagaagtcaaag
aaacaccatcgcaagcgatcccgctctcgatcagcttcagagtcagaggatgaggagtac
cacaagaaaaagaagaggtcgcagtccaaatctccctctgagcgttcttctagtggagaa
tctgagagaagctataaaaaatccaagaaacacaagaagaagggcaagaagaggcgccac
aaatctgcctcaccggactctgaaggcgagaagaaaggaagagagcgtgacgggaagaga
gaacgggattcagagaaggataaagagaacgacaagagtcgggggaaatctcgctctgag
tctaaacagaaatctcctaaaagaaaagcagccaaagaggagggtggctgggacacatcg
ggcagcgagctgagcgagggagagctggagaagagaagaagaactttactggaacaactg
gatgcaccttga
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