Cyprinodon variegatus (sheepshead minnow): 107087293
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Entry
107087293 CDS
T06110
Symbol
usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107087293 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvg03041
]
107087293 (usp39)
Spliceosome [BR:
cvg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
107087293 (usp39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
107087293
NCBI-ProteinID:
XP_015234285
Ensembl:
ENSCVAG00000022610
UniProt:
A0A3Q2DJ64
LinkDB
All DBs
Position
Unknown
AA seq
498 aa
AA seq
DB search
MSLKREREDEVDDDDSEDEVSTKRGRGRVEEDRRSRHCPYLDTINRSLLDFDFEKLCSIS
LSHINVYACLVCGKYFQGRGQKSHAYTHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLE
DITYVLKPTFTKKHIAGLDKHGKLYRAYDGTTYLPGIVGLNNIKANDYANAVLQAFSNVP
PLRNYFLEEENYKGIRRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCS
KKTFQITKQGDAVDFMTWFLNALHGALGGTKKKPSIITKVFQGSMRIFSKKLPHPDLPPE
EKEALLQTEEYQEQMSESSFLFLTLDLPTAPLYKDEKEQLIIPQVPLFNILGKFNGNTEK
EYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLSEYLTEEA
QATEKNTSYDLVANIVHDGKPTEGSYRIHVLHHGTGKWYEMQDLQVIDILPQMITLSEAY
IQIWKRQESSDTNNHKGV
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgaagagagagagagaggatgaggtggacgacgatgatagcgaagacgaggtt
tcaaccaaaagaggacgaggacgtgtagaagaagaccgtagaagccgccattgcccttat
ctggacaccataaacaggagtttgctggattttgactttgagaaactctgctccatctcc
ctctcacatataaacgtctatgcgtgccttgtatgtgggaaatactttcagggcagaggt
cagaagtcccatgcatatacccacagcgttcagttcagccatcatgtgttcctcaacctc
catacactgaagttttactgtctgccagataactatgagatcatcgactcctcgctagag
gacatcacatatgtgctaaagccaaccttcactaagaagcacattgcaggactggataag
catggtaaactgtacagagcctatgacgggacgacctacctgccaggcatcgtggggctc
aataacatcaaagctaacgactatgccaatgcagtgttacaggctttttctaatgtccca
cctttgcgaaactacttcctggaggaggaaaactacaaaggaatccgcagaccaccaggg
gacatcatgttcctcctggttcagaggtttggggagctgatgcgcaaactttggaacccc
agaaacttcaaggcccacgtgtctccacatgagatgctgcaggccgtggtgctgtgcagc
aagaagacctttcaaattacgaagcagggtgatgctgtagactttatgacatggttcttg
aatgctctgcatggggctcttggaggcaccaagaaaaagccatcaatcatcacaaaggtt
tttcaaggctccatgagaatcttctctaagaaacttccacacccagatttgccacctgag
gaaaaggaggcgctacttcagacggaggagtaccaggagcagatgtccgagtcctccttc
ctgtttctgaccctggacctcccaacagctcctctgtacaaggatgaaaaggagcagctt
attatccctcaggtccctcttttcaacatcctgggcaaattcaatggcaatactgaaaag
gaatacaaaacctacaaagagaatttccttaaaaggttccagctgaccaagctgccacct
tatctcatcttttgcattaaaagattcaccaagaacaacttctttgtggagaaaaaccca
acaattgtcaacttcccaatcacaaacgtagacctttcagagtacctcacggaagaagct
caagctacagagaagaatacttcttatgaccttgttgccaacattgttcatgatgggaaa
cccactgaaggatcctacaggatacatgtcctgcatcatggaacagggaagtggtatgaa
atgcaagatctgcaggtgatcgacattctccctcagatgatcactttgtcagaggcctac
atccagatttggaaaaggcaagagagcagtgacacaaacaaccacaagggggtgtga
DBGET
integrated database retrieval system
