Cyprinodon variegatus (sheepshead minnow): 107087332
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Entry
107087332 CDS
T06110
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03030
DNA replication
cvg03410
Base excision repair
cvg03420
Nucleotide excision repair
cvg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107087332 (rfc5)
03410 Base excision repair
107087332 (rfc5)
03420 Nucleotide excision repair
107087332 (rfc5)
03430 Mismatch repair
107087332 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cvg03032
]
107087332 (rfc5)
03036 Chromosome and associated proteins [BR:
cvg03036
]
107087332 (rfc5)
03400 DNA repair and recombination proteins [BR:
cvg03400
]
107087332 (rfc5)
DNA replication proteins [BR:
cvg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
107087332 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
107087332 (rfc5)
Chromosome and associated proteins [BR:
cvg03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
107087332 (rfc5)
DNA repair and recombination proteins [BR:
cvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
107087332 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
107087332 (rfc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_22
AAA_24
RuvB_N
AAA_14
AAA_assoc_2
ResIII
AAA_16
DEAD
DUF815
PhoH
AAA_7
ATPase_2
TIP49
AAA_19
AAA_5
AAA_30
DNAX_ATPase_lid
AAA_2
nSTAND3
Gp44_lid
Mg_chelatase
Thioredoxin_6
AAA_25
Glyco_hydro_57
DUF4119
Motif
Other DBs
NCBI-GeneID:
107087332
NCBI-ProteinID:
XP_015234345
Ensembl:
ENSCVAG00000018134
UniProt:
A0A3Q2EBV7
LinkDB
All DBs
Position
Unknown
AA seq
335 aa
AA seq
DB search
MASTNKGQLQSRNLPWVEKYRPQSLDDLISHKDILSTIQKFISEDKLPHLLFYGPPGTGK
TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRL
EHVIQQENIDVSSDGMKAIVTLSSGDMRRSLNILQSTSMAYEKVTEHTVYTCTGHPLRSD
IANILDWCLNKDFTSAYKQILELKTLKGLALHDILSEVHLLIHRVDFPPAIRIGLLIKLA
DIEYRLASGTDEKIQLSSMVAAFQAVRDMVVSEAS
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaacaaataagggacagttacagagcaggaatctaccatgggttgaaaaatac
agacctcaatcgcttgatgatttgatttcacacaaagatattctgagcaccatccagaaa
ttcatcagtgaggacaagcttccccacctgttgttctacggcccccctggaacaggaaag
acgtccacgatcctcgcctgtgcaaggcagctctacaaggacaaagagtttaactccatg
gtgttggagctcaacgcatcagatgacagggggattgacgtcgtccgaggtcctattctg
agttttgccagcaccaggactattttcaaaaagggattcaagttggtgatactggatgag
gccgatgctatgacccaggatgcccagaatgcattgcgacgagtcattgagaagttcaca
gaaaacactcgattctgcctcatctgcaactacttgtccaagatcatcccagccctgcag
tctcgctgcaccaggttccgcttcggccctctgtctccggaccagatgatccctcgactg
gagcacgttatccagcaagagaacattgatgtcagttcagacggaatgaaggccattgtc
actttatcgtcaggtgatatgagaagatcactcaacatcctgcagagcaccagtatggcg
tatgagaaggtcacagaacacacagtgtatacctgcacaggccacccgctccgctcagac
atagccaacatcctggactggtgcctcaacaaggactttacttcagcttataaacaaatt
ctggagctgaagactttgaagggtttggctctgcatgatattctctctgaggtgcatctg
ctcatccacagagtggactttcctccagctattcggattggcctgctgatcaagttagct
gatatagaatatcggctggcctcaggaacggatgaaaagatccagctgagctctatggtt
gcagctttccaggcagtcagagacatggtggtcagtgaagcctcttaa
DBGET
integrated database retrieval system
