Cyprinodon variegatus (sheepshead minnow): 107087575
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Entry
107087575 CDS
T06110
Symbol
hif1a
Name
(RefSeq) hypoxia-inducible factor 1-alpha
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04137
Mitophagy - animal
cvg04140
Autophagy - animal
cvg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
107087575 (hif1a)
04137 Mitophagy - animal
107087575 (hif1a)
04148 Efferocytosis
107087575 (hif1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cvg03000
]
107087575 (hif1a)
Transcription factors [BR:
cvg03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
107087575 (hif1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
PAS_2
Motif
Other DBs
NCBI-GeneID:
107087575
NCBI-ProteinID:
XP_015234712
Ensembl:
ENSCVAG00000010597
UniProt:
A0A3Q2CSY7
LinkDB
All DBs
Position
Unknown
AA seq
752 aa
AA seq
DB search
MDTVIIPEKKRVSSERRKEKSRDAARCRRGKESEVFYELAKQLPLPQSTSSSLDKASIMR
LTISYLRMRKLLCIDELVAEEKTELDEQLNGSYLKALDGFLIVLSEDGDMIYISENVNRC
LGLAQFDLIGHSVFDFTHPCDQEELREMLVYRSGSKKVKEPSTERNFFLRMKCTLTSRGR
TVNVKSATWKVLHCSGHVRVHSSEQSADGPKEPPVPYLVLICDPIPHPSNIEVPLDTKTF
LSRHTMDMKFTYCDERITELMGYDPEDLLNRSVYEYYHALDSDYLTKTHHHLFTKGQVTT
GQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQEDKLILSLEQTEGVEP
VKEQQQGEEESAAEANEALKVKEEEEEEKTPELDVIKLFTEVEIQPKDCLYNLLKGHPDA
LTLLAPAAGDTIISLDFSRPGAESETHLLKDVPLYNDIMMPSSDDKLTLPMSPLSPTEPL
DASNSASEEAKPDSFVPTLLTTPPNKPSEVDNPLGFSFPMETEMNSDFKLDLVEKLFAVD
LDSKTPFNTEAMEDSELEMFAPYISMEDDFQLPCLSPGEPLPCGPGNPPDSSPVLVPLDV
RSYPSSPFSAPESRTASPAPPESVCTPPAATITAKKAPKPEQEIPLRTLAVQNVQRKRKL
SELKEIIEQGSVTQEPEKVKKLKATEMVAARTVLLLPSDLASRLLGTTSDVSSSPFTLPH
LTSYDCEVNAPLQGRQYLLQGEELLRALDHIN
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggacacagtgatcatacctgaaaagaaaagggtgagttcggagcgcagaaaggagaag
tcaagggatgcagcgagatgccggcgcgggaaggagtcggaggtgttctacgagctggcc
aagcagctgcccctcccccaaagcaccagctccagcctggacaaggcgtccatcatgagg
ctgaccatcagttacctgcgcatgcgaaaactgctctgcattgatgagctggtggcagaa
gagaaaaccgaactcgatgagcagctgaatggctcctacctgaaagctttagatggcttt
ctcattgtgctgtctgaagatggagatatgatctatatctcagaaaatgtcaacaggtgc
ctcgggctggcgcagtttgacctgatcggacacagtgtgtttgactttactcatccctgc
gaccaggaggagctgagggagatgctggtctacagatccgggtccaagaaagtcaaggaa
ccgagcacagagcggaacttcttcctgcggatgaaatgcaccctcaccagcagagggcgc
accgttaatgtgaagtcagccacatggaaggtgctgcattgctcgggtcacgttcgtgtt
cacagcagtgagcagagcgccgacggccccaaggagccacccgtcccctatctggtcctg
atctgtgaccccatcccccacccttccaacatcgaggtccctctggacaccaagaccttc
cttagccgccacaccatggacatgaagttcacctactgtgacgagaggatcaccgagctc
atgggttacgatccagaagacctgctgaaccgttctgtgtatgaatactaccatgctctg
gactcagactacctgacaaagactcaccatcacctttttacaaagggccaggtcaccaca
ggtcagtaccggatgctggctaaaagaggaggctttgtgtgggtggaaacacaggctact
gttatctacaacaacaagaactcccagcctcagtgtgttgtgtgcgtcaactttgtgctc
agcgggatccaggaggacaaattgatcctgtctttggagcagactgagggcgtggagcct
gtgaaggagcagcagcagggtgaagaagaatcagcagcagaggcaaacgaggctttgaag
gtgaaggaagaggaggaggaggagaagactccagagctggatgtgataaagctcttcacg
gaggtggagatccagccgaaggactgtctgtacaacctgctgaaaggacaccctgatgcc
ctgaccctgctggccccggcagctggggacacaatcatctccctggatttcagccgcccc
ggtgcagaatcagagacccacctgctgaaagatgtccctctctacaatgacataatgatg
ccgtcctcggatgacaagctgacgctgcccatgtctcctctgtcgcccactgaaccgctg
gacgcctccaacagcgcatctgaggaggccaaacctgacagctttgttcccaccctcctg
actacaccacccaacaaaccttcagaagtcgacaatcctctgggcttttctttccccatg
gaaacagaaatgaactcggactttaaactcgacctggtggagaagctgtttgccgtcgac
ctagattccaaaactcccttcaacacagaggcgatggaggactcagaactggagatgttt
gcaccatacatctccatggaggatgacttccagctgccctgcctctcccccggagagcct
ctgccttgtggaccaggcaaccccccggacagctccccggtcctcgtcccgctggacgtc
cgcagctatcccagctctccgttcagcgcaccagagagccgcacggcttccccagctcca
cccgagtccgtctgcacgcctcctgctgccaccatcactgcaaaaaaagccccgaagccg
gagcaggagatccctctcagaactctggctgttcagaatgtgcagcgtaaacgaaaactg
agcgaactgaaggagatcattgagcagggatctgtgacccaagaacctgagaaggttaaa
aagctgaaggcgacagagatggtagcagccaggaccgttctcctcctgccttcagatttg
gccagcagattgcttggaaccacatctgatgtgagcagctcccccttcacgctgccacac
ctcaccagctacgactgcgaggtaaacgcccccctacagggccgccagtacctgttgcag
ggggaggagctgctgcgcgctctggaccacatcaactga
DBGET
integrated database retrieval system
