KEGG   Cyprinodon variegatus (sheepshead minnow): 107087637
Entry
107087637         CDS       T06110                                 
Symbol
thoc3
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
cvg  Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03013  Nucleocytoplasmic transport
cvg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cvg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107087637 (thoc3)
  09122 Translation
   03013 Nucleocytoplasmic transport
    107087637 (thoc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cvg03019]
    107087637 (thoc3)
   03041 Spliceosome [BR:cvg03041]
    107087637 (thoc3)
Messenger RNA biogenesis [BR:cvg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     107087637 (thoc3)
Spliceosome [BR:cvg03041]
 Complex C
  Other components
   EJC/TREX
    107087637 (thoc3)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    107087637 (thoc3)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40_CDC20-Fz WD40 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_Prp19 WD40_WDHD1_1st WDR55 ANAPC4_WD40 Beta-prop_Aladin Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_EML eIF2A Beta-prop_WDR36-Utp21_1st WD40_RFWD3 Beta-prop_WDR35_TULP_N RMC1_N Beta-prop_TEP1_C WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_HPS5 Tricorn_2nd B-prop_COPA_B_2nd Beta-prop_ACSF4 WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_NUP159_NUP214 PD40 Beta-prop_WDR41 Beta-prop_Nup120_160 Cytochrom_D1 Beta-prop_SCAP Peptidase_S9_N WD_LRWD1 Beta-prop_NWD2_C DPPIV_N YNCE Beta-prop_WDR11_1st PROPPIN Beta-prop_ELP1_1st Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 107087637
NCBI-ProteinID: XP_015234802
Ensembl: ENSCVAG00000006941
UniProt: A0A3Q2DUK8
LinkDB
Position
Unknown
AA seq 322 aa
MASQYYQEMQESFRNNNKSREFQAHTAKVHSVAWSCDGRRLASGSFDKTASVFVLEKDRL
VKENNYRGHSDSVDQLCWHPTNPDLFVTASGDKTIRIWDVRTTKCVATVNTKGENINICW
SPDGQTVAVGNKDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNDMFFLTNGNGCINIL
SYPDLKPIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWDVEELVCVRCFSRLDWPV
RTLSFSHDGKMLASASEDHFIDIAEVETGEKLWEVQCDSPTFTVAWHPKRPLLAFACDDK
EGKYDSNREAGTVKLFGLPNDS
NT seq 969 nt   +upstreamnt  +downstreamnt
atggcgtcacaatattaccaagagatgcaggagagcttcagaaataacaacaaaagccgg
gagttccaggctcatacagccaaagtacattcagtggcctggagctgcgatgggaggagg
ctcgcctccggctcgtttgataaaacagccagcgtttttgtcctggaaaaggaccgtttg
gtgaaggagaacaactacagaggacacagtgacagcgtggatcagctgtgctggcatcca
accaaccccgatctgtttgtcactgcgtccggagacaaaaccattcgcatatgggacgtg
cgcacaaccaaatgcgtcgccacagtcaacacgaagggtgagaacatcaatatctgctgg
agtccagacggtcagactgtcgcagtcgggaacaaagacgacgttgtgaccttcatcgac
gccaagacgcaccgctccaaggctgaggagcagttcaagtttgaggtgaacgagatctcc
tggaacaatgataacgacatgttcttcctcaccaacgggaacggctgcatcaatattctg
agctatccggacctgaagcccatccagtccatcaacgctcacccatccaactgcatttgc
atcaagtttgaccccacggggaaatactttgccacaggaagtgctgacgctctcgttagt
ctgtgggacgtggaggagctggtatgtgtgcgctgcttctccagactggactggccggtg
aggactctaagcttcagccacgatggaaagatgttggcctctgcctctgaggatcatttt
attgacattgcagaggttgaaacaggtgagaagctgtgggaagtgcagtgtgattctcca
actttcacagtcgcctggcatccaaagagaccgttgctggccttcgcctgtgatgacaag
gagggcaaatatgacagcaacagagaggcaggaacagtgaaactgtttggccttcctaat
gactcctga

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