Cyprinodon variegatus (sheepshead minnow): 107087714
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Entry
107087714 CDS
T06110
Symbol
acin1
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03013
Nucleocytoplasmic transport
cvg03015
mRNA surveillance pathway
cvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107087714 (acin1)
09122 Translation
03013 Nucleocytoplasmic transport
107087714 (acin1)
03015 mRNA surveillance pathway
107087714 (acin1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107087714 (acin1)
03041 Spliceosome [BR:
cvg03041
]
107087714 (acin1)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107087714 (acin1)
Spliceosome [BR:
cvg03041
]
Complex C
Other components
EJC/TREX
107087714 (acin1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
107087714
NCBI-ProteinID:
XP_015234923
LinkDB
All DBs
Position
Unknown
AA seq
1631 aa
AA seq
DB search
MADLEDVTLDGRPLQSLRVADLKAALEERGLSKSGQKNALVKRLKGALMLENLQKTSTPH
VGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAYDTNEQEVHTQVNNSTPCP
PPAQEVTPAGQHRPPGSSDGEGFFGSVNSGQGNRSQEADVSSPPASGSKAMRAPASEQRS
ERGSASGEVAGESDDDDSEEDGDDDEDWGNRAPRRSLREPARVPAARSGAARSGPARSGP
ARSGAARHPQPQQQHIPSLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPPVARHSPS
SSSSGSSSSGSRSSSPEPQRSGHADRKPGPLTLLARKMESEGAFSGGWHGADGKGDGQDG
GSPSLMAFPGKGPPDGLGSASIIPGTHSAHIQKSGRARKTAAAQERERERMMELERQKAL
ELERQEQEMIEQQLALEREERERVLQRELALEKERQEREEALAKEREEQERAIEMERQRE
LERRRALEERLQREREEKEKREREEMEKALELERAKEKERIEKERALEQERLERERVLEA
ERKEKERLEREKALEQERLEKERIERQKALEQERLEKERIEREKALEQERMEKERIEREK
ALEKERLEKEKREREKALEQERLEKERIQREKAFEQERLEKERIEREKALEKERLEKERI
EREKALEQERLEKERIEREKALEQERLEKERIEREKALEQERLEKERIEREKALEQERLE
KERIEREKALEQERLEKERVESEKALEQERLEKERVEREKALEQEREQALQKEKVEKERA
LEQEMQDKAMEQEKERGGSVSPPRSGTKLGVSTQAAPEQQNVRTSLAQTEAQPAKSISTT
VSPQSSFKKSRLFRDSPVRPQSGSTSIVIKRPRTFSDTPQPRAPLATLPTSAGERQPGQH
LPSTDQEDAQIHSNQDVSTAPVASTRTGSDSLNTNPTPAHSDPKEERPMMAREEATLPKT
AEPVEGEDQSIDSSIPEGKQDREANKEGKKVRRRSLSDDSSSSDSDSSSSRSSGSSSSSQ
DQPVSTSRSRPVSPPNSNFLKQAAEETRKEEANRKRKHSEKEEEKEPEGQETEAPTTDPE
KHSESSEEIPKAFSSRKISLSSSKPSPGSTEAEHESGAGAGRKRRWGSSTAVTAKKPSIS
ITTESLKSLIPDIRPPVGQDAVVDLHPEEAALSGTEEEERERSDQDLQIRRTVTQVVPAE
SQENGQKEAKRIRREDFEEDDSQVEGGSITAHEEQMDTSLPAAVETQSPTLPSQDTESNT
VTPSDTLIRRSISQQKTGVSITIDDPVRTATQPSPPRGQASNIVHIWNLVRPFTLGQLKE
LLSRTGTLVEDGFWINKIKSHCYVTYSTIEEAVATQAALHGVKWPQSNPKFLRVDFCQQE
ELDHQRNPSMAVDRPAGEDTGPAPVRGRTSGPPPLLPERDQWAEREREMERRERARAERE
WDRDKVKEFGKTEGEKEGGSRRSQSRERRRKERAKSKEKKMEKKAEDPPAKLLDDLFRKT
KAVPCIYWLPLTEEQFVQREAARAKETKEREERRKEREKRRKQEEEEEEKKREEERKERT
KAAAASAENRSEGEKDKGRERDRDRGRDRERDRDRNRENDKRREGYRRPGGSGAGSSRRS
RSRSEPRERRR
NT seq
4896 nt
NT seq
+upstream
nt +downstream
nt
atggcggatctcgaagacgttacgctggacgggagaccgctccagtcgctccgcgtagca
gaccttaaagcggctctggaagagcgggggctgtcgaaaagcggacaaaagaatgctctc
gtcaaaagacttaaaggggctctcatgctggagaatttgcagaaaacctctactccacat
gttggactgcagcctaactctcagattggtgaggaaatgagccagaacagttttatcaaa
cagtatctggccaagcagcaagagctcctgaggcagcgtcttgagagagaggcccgtgaa
gcatatgatacaaatgagcaagaggtccacacacaggttaacaacagtacgccatgccct
cctcctgcacaggaagtcacaccagcagggcagcacagaccacctgggtcctcagatgga
gagggattctttggttcagttaattcaggacagggaaacaggagtcaggaggcagatgtg
tccagtccccctgcttctggctctaaggccatgcgagctcctgcctcagagcagaggtca
gaacgaggttcggcttccggtgaagttgcaggcgaaagcgatgatgatgacagtgaggaa
gatggcgatgatgatgaagactggggaaacagggctccaagaagaagcctcagagaacca
gccagagtacctgcagcacggtctggtgcagcaaggtctggtccagcacgttccggtccg
gcacggtctggtgcagcacgtcatccacaacctcagcagcagcacattccttcccttttg
tcacctcagctccgccaaccaacaccacctccatccccacctccagaattatcatttccc
ttacctgacaccccaaagcagagcccacctagtccccctgttgccaggcactcgccaagc
tcttccagctctggctcctccagcagcggcagccgcagtagcagcccagagccacagaga
agtggccatgctgaccgtaagccaggtcctcttacccttctggcacgtaaaatggagtct
gagggtgccttttctggaggttggcacggtgctgatggtaaaggtgatgggcaagatggc
ggttcaccctcacttatggcgtttcctggcaaagggccaccagatggtctagggtctgcc
agtataattccaggcacacattcagcccacatccaaaaatctgggagagcacgcaaaaca
gctgcagcccaggaaagagagagggaaaggatgatggagctggaaagacaaaaggcactt
gagctggagaggcaagaacaggagatgattgagcaacagttggctttagagagagaagag
agagaaagggtcttgcagcgagagcttgctcttgaaaaagagagacaggagcgggaggag
gctttggctaaagagagggaggagcaagagagggcgatagagatggaaaggcagagagag
cttgaaagacgtagagctttggaagaacgtctgcagagagagagggaagagaaggaaaaa
cgtgaacgagaggagatggagaaggccttagagctagaaagagccaaggagaaagaacgg
atagagaaagaacgggctctagagcaagagaggttggagagagagcgggtgttggaagcc
gagagaaaggagaaggaaaggcttgagagagagaaagctcttgagcaggaacgattggaa
aaggaaaggatagagaggcagaaggcactggagcaggaacgattggaaaaggaaaggata
gagagagagaaagctcttgagcaagaaagaatggaaaaggaacgtattgagagggagaaa
gctcttgagaaggaaagattagaaaaggaaaagagagagcgagagaaagcactggagcag
gaacgattggaaaaggaaaggatacagagagagaaagcttttgagcaggaacgattagaa
aaggaaaggattgagagggagaaagctcttgagaaggaaagattagaaaaggaaaggata
gagagagagaaagcccttgaacaggaaaggttggaaaaggaaaggatagagagagagaaa
gctcttgaacaggagagattggaaaaggaaaggatagagagagagaaagcactggagcag
gaacgattagaaaaggaaaggatagagagagagaaagctcttgagcaggaacgtttggaa
aaggaaaggatagaaagggagaaagctcttgagcaagaacgcttggaaaaggaaagagtc
gagagcgagaaagctcttgagcaagaacgcttggaaaaggaaagagtcgagagggagaaa
gctcttgagcaagagagagaacaggctttacagaaagaaaaagtagaaaaagagagggct
ctagagcaagaaatgcaggacaaggcaatggaacaagagaaagagagagggggtagtgtt
tctcctcctagaagtggcactaagctgggtgtcagtacccaggctgccccagagcagcaa
aatgtccgtacttctttggcacagactgaagctcaaccagctaagtctatttccacaact
gtctctccacaatcatcatttaagaagtctcgccttttcagggactctccagtacgacct
cagtccggttcaacctcgattgttattaagcggcctcgtacattttctgataccccccag
cctcgagcccctcttgccaccttacctacaagcgctggggaacgtcagccaggacaacac
ttgccatcaactgaccaagaagacgcacaaattcattccaaccaagatgttagcactgca
cccgtagcatctacaaggactggttctgacagcctgaacaccaacccaactccagctcac
tcagatcctaaagaagaaaggcccatgatggcgagagaagaggctacattgccaaagact
gcagagcctgttgagggagaagatcaaagcatagattcttcaatccctgaaggaaagcag
gacagagaagcaaataaagaaggaaaaaaagtacgacggagatctttatcggatgattcc
tcttcctcagattctgattcctcatcatcacggtcatctggttcatcgtcatcttctcaa
gaccaaccagtctccacctcaaggagtagaccggtaagccctccaaattccaacttttta
aaacaagctgctgaggaaacaagaaaagaggaagcaaacaggaagagaaaacacagcgag
aaagaagaagaaaaagaaccagaggggcaggagacagaggctcccactacagatccagag
aagcattcagagtccagtgaggagataccaaaggctttctcctcacgaaagatctctctt
agcagcagtaagccgtcaccaggcagcacggaggccgagcacgagtctggggccggggca
ggtcgcaaaaggaggtggggctccagcacagccgtcactgccaaaaaaccctccattagt
atcaccaccgagtcactcaagtccctgattcctgacatcaggccgcctgtcggtcaggat
gctgttgtagatcttcatcctgaggaagctgctctgtccggtaccgaggaggaagagcgg
gagcgctctgaccaggaccttcagatccgacgcaccgtcacacaggtggtgcccgctgaa
agccaagaaaatggccaaaaagaagcaaagagaataaggcgggaagactttgaggaagat
gattctcaggtagaagggggaagtatcacagcccatgaggagcagatggacacctctctc
ccagcagctgtggaaactcagtcaccaacactaccaagccaagataccgaaagcaacact
gtgacacccagcgacaccctcattcgacgctccatcagccagcagaaaacgggtgtctcc
atcactatcgatgaccctgtccgcacagcgacgcagccatcaccaccgcgaggccaagcc
tccaacattgttcacatctggaacctggtgaggccgttcacactgggacagctgaaggaa
ctgctaagcagaactggcaccctggtggaggatggcttctggataaataaaatcaaatcc
cactgctatgttacttactctactattgaagaggcagtcgctacacaggcagctcttcat
ggagtgaaatggcctcagagcaacccaaagtttcttagagtagacttctgccagcaggag
gagttggaccaccagagaaacccctcgatggccgtggacagacctgcaggagaggacaca
ggacctgccccagtgcgtggacgaacatcagggccgccacctctcctccccgagcgggac
cagtgggccgagcgtgagcgtgagatggagcgcagggagcgtgcccgagcagagcgggag
tgggatcgagacaaggttaaagagtttgggaaaaccgaaggtgagaaggagggaggctca
cgaagatcacaatccagagagagacggcgaaaggagagggcaaagagcaaggagaagaag
atggaaaagaaagccgaagatccccccgcaaagctgctggatgacctgttccgcaaaact
aaagccgttccctgcatttactggcttcctctcacagaggaacagtttgtgcagcgagaa
gctgcccgagcaaaagagacgaaagagcgcgaggagcggaggaaagaacgcgagaagaga
agaaaacaggaagaagaggaggaggagaagaaaagggaggaggagcgcaaggagagaacg
aaagcagccgccgcctcggcagaaaaccggagtgagggtgagaaggacaagggccgggag
agggacagagaccggggtagagacagggaaagggacagagacaggaacagggagaacgac
aaacgcagggaagggtaccgtaggccagggggcagcggagcgggatccagccggcgctcc
cgcagccggagcgaaccaagagaaaggaggcgctga
DBGET
integrated database retrieval system
