Cyprinodon variegatus (sheepshead minnow): 107087722
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Entry
107087722 CDS
T06110
Symbol
chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8 isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
107087722 (chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cvg03036
]
107087722 (chd8)
Chromosome and associated proteins [BR:
cvg03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
107087722 (chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
HDA2-3
HTH_Hrp3
MUN
Motif
Other DBs
NCBI-GeneID:
107087722
NCBI-ProteinID:
XP_015234932
LinkDB
All DBs
Position
Unknown
AA seq
2610 aa
AA seq
DB search
MADPIMDLFEDTPLFNLDGLPDDSFSQGSSDPVEEALKLALGQAVPTGEPESTPDLAVSS
SLGVPVATPVIPDPAPLSVPTQQPVSVGSAQTVSVAPVVEAGAFMTSAPVPAPAECVPQI
QAQTTIPVASNPSGVSSSTVLLSSPLTVSSSPAITTTATTQQLTQITHQLTPQQLAAITQ
QAGGKIVILKGPQGQAQVLQAVSGTTGQTGGKVIRLLSGTPLKPGMSILQGGTVLNQASP
GQTQVKVGAAGVQRLLQSANGPVKQVLLTSMPQQTQGQPVQVQMAQGQTTVQVQPQTQTS
QIQVQPQGQSTQLQVQPQAQTVQIQVQPQAQAAPAQVQTQGQVQLQPAMQGQTQGGEAKR
ITLVLQQPSQTGSTTPAVSAQQQVTAGGQQQQTQAPARLVLGQLPGGKLVLQGSQLAALT
QARAAGQAGGQPKVLTIQLQVQQQPNQQGGVKYQLVSGAGGTGGPQMLQISQGQGGQRVA
VPLKMLLQPQTSSATSSGGTVSVVKVINPSTAAPSATTTTPSQAIRITKAPGEPAAVRRV
EILCKQEKANRIVAEAIARAKARGEKNLPRVLNQDELPSTQTSPEMGGTLTLVSPAKKKS
SGGGGSKKKSLVSGGPIPKIIVGTDKKGKVVKISGGTIAVSGGTVIPGAGNKSKSKTKAN
TITLVGAKKRKRNASSDVSDGELSPPSPVPMEDDMIMKRRSNRVVKRKKYTEDLDIKITD
DEDEQEDVDVTTTAAAVASISGGAAAQLKQEVELDGDGLPSMQFFVENPSEEDAAIVDKV
LSMRITKKEVSPGQYTNIEEFFVKYKNYSYLHCEWATLNQLEKDKRIHQKIKRFKTKHAQ
MRHLFQEEEEPFNPDYVEVDRILDVSHSVDKDNGEPVIYYLVKWCSLPYEDATWELKEDV
DEGKVEEFGKLLNRQPRLKKMVRPSASAWKKLEETREYKNGNTLREYQLEGVNWLLFNWY
NRQNCILADEMGLGKTIQSITLLSEIYAAGVQGPFLVIAPLSTITNWEREFSTWTNMNAI
VYHGSLASRQMIQQYEMYCKDDKGHLIPGAYKFDALITTFEMVLSDCPELREISWRCVII
DEAHRLKNRNCKLLDSLKMLDLEHKVLLTGTPLQNTVEELFSLLHFLEPAQFPSEIEFLR
EFGDLKTEEQVQKLQSILKPMMLRRLKEDVEKNLAPKQETIIEVELTDIQKKYYRAILER
NFSFLSLGANSNSNVPNLLNTMMELRKCCNHPYLINGAEEKIVTELREKYDPLAPDFHLQ
ALIRSAGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLINKRYLYERIDGRVRGN
LRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRI
GQSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSMSGNKDSNVNGLQQFSKKEIED
LLRKGAYAAIMDENDEGSRFCEEDIDQILQRRATTITIESEGKGSTFSKASFVASENRTD
IALDDPEFWQKWAKKADIDMDTINRKNTLVIDTPRIRKQTRQYSSLRGEGGDLSDLDSDD
EYPPANSRHSRSSRRSDRHSGGGYGRTDCFRVEKHLLVYGWGRWRDILAHARCKRRLSER
DVETICRVILVFCLMHYRGDENIKSFIWELITPPENGREPQTLLNHSGLSIPVPRGRKGK
RVKAQSTFDVQKVEWIRKYNPDTLLLDDSYRKHLKHQCNKVLLRVRMLYYLKQEVIGDHA
DSVLKGADIRDVDIWMPEMEQQEVPAAWWDSDADRSLLAGVFKHGYEMYTTMRADPCLCF
VERVGRPDDKAIDAEQHTGDTELGDDADFDKFSEDPEFKPASRVSKDLFDEPDSMNVDDE
ISVEDKTVPTVTESSTSQSGVCEWPSSSSLTARLRRLITAYQRSYRQEQLKMEAEAKGDR
RRRRCEQASKLKEIARQERQQRWTRREESDFYRVVSTFGVEKIKKEPGISEEGEVEFDWN
RFRTFARLDKKTDESLSRYFRSFLAMCRRVCHLRPGRGEDPSELTQTVAPITEERASRTL
YRISLLRRLRERVLPHPSLEERLLLAPRSSELPAWWTMPDHDRQLMLGAALHGVSRTELS
IFPDPQFTFSSARDEFIQNQQALPPPPPPPPPPIMTLGQPKMELDLTSMKREETDESARL
FGGGMSTELQSTPLSHHAVKVQGQDWSFKSSRERSEKAGRKGGGGSDSDSDSDSGSSSSE
RSGSSDDSGDSDEEVEGRGMKVGDVDEENSLLSMTPSQDSILPPEPIRVEWPKDRVLINR
LDNLCTLVLTGQWPSGRRYIPEAQLNPSSELLGEEMAYPRVIRKPISTPGGIGPEGEDGE
FTVKLLKEEGLKLTFSKQALMPNGSGGESSGRKKRKDQELSEFDELDSLERTPRRRDPPT
WLKENPDYEVEGDMLELLVNRSKRKRRRRANKPLTGTEKVKVINMLTGKKVGAAFSPMLQ
DLKEYLEENPNIAVSPEWSETVQKSGLLPESLFHRLLSENSEIPKKSHRRRHHHHHHHHH
HHYHTPDPTPEDPNLDGVEEETLVSDGAYMMDEEDLETPHHFLTSPDFDVKMGGGDSLSQ
GDYDSSDQEALLEDVILAPKDSDSSSSSED
NT seq
7833 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcccattatggacctctttgaggacactcccctatttaacctggacggcctc
ccagatgactccttctctcaggggtcatcggaccctgtggaagaagctctaaagttggct
ttggggcaagctgtcccaacaggcgagccggagtccactcctgaccttgccgtcagctcc
agtcttggcgttcctgtagcaactccagtcatcccagatcccgctccactttccgttcct
acccagcagccggtctcagtcggttctgcccagactgtgtctgtagctcctgtcgtggaa
gccggagccttcatgacctcagccccagttcctgccccagctgagtgtgtgccacagatc
caggcccagacaaccatccctgttgccagcaaccccagtggggtttccagtagcaccgtc
ctgctgagctcacctttgaccgtttccagctccccagctattaccaccactgccaccacg
cagcagctgactcagataactcaccagctcactccccaacagttagctgccattacacag
caagctggagggaaaatcgtcattctcaaaggcccccagggtcaggcccaggtgctgcag
gccgtgtcaggaaccacgggccagacgggcgggaaggtcatccgtctgttgtctggtacc
cctctcaagcccggtatgtccatactgcaaggaggtaccgtcttaaatcaggctagccca
ggacaaacccaagtcaaggtgggtgctgcaggggtgcagcgtctgctgcagtctgccaac
gggccggtcaaacaggtgttgctcacatccatgcctcagcagactcaaggtcagccggtt
caggtgcagatggctcaaggtcagactactgtccaggttcaacctcagacccagacctct
cagatccaggtccaaccccaaggacagtctacccagctccaggtccaaccccaggcccaa
actgtccaaatccaggtccagcctcaggcccaggctgctccggcccaggtccaaacacag
ggtcaggtgcagctccaacctgccatgcagggccagacacagggaggtgaagccaagcgc
atcaccctggtcctccagcagccgtcgcagactggttctaccacaccagccgtcagtgct
caacagcaagtcacagcaggaggtcagcagcagcagacacaggctcctgccaggctggtt
ctgggtcagctccctggtggcaaactggtgctccagggaagccagctagcggcgctgacc
caggctcgggctgcaggtcaggctggagggcagcccaaggtcctcaccattcagctgcaa
gtacaacagcagcccaaccaacaaggaggcgttaagtaccagcttgtgtcgggagctggg
ggcaccggcggccctcagatgttgcagatatcccaaggccaaggaggacagagagtggct
gtacctctcaaaatgcttctgcagccacagacgagttcagccacatcttccggcggcact
gtgtctgtggtgaaggtcatcaacccttccaccgctgccccctctgctacaactaccact
ccctcgcaggccatccgcattaccaaggcccccggcgagcccgcggccgtccgacgggta
gagattctttgcaaacaggagaaggcaaatcgaatagtggctgaagcaattgctcgggcc
aaagcacggggagaaaagaacctgcccagggtcctgaatcaggacgagcttccatccaca
caaacttcaccggagatgggagggactcttaccttggtgtctcctgcaaagaaaaaaagc
agcggcggaggcggaagcaaaaagaaaagtctggtgtctggaggacccatacctaaaatc
attgttgggactgacaagaagggtaaagtggtaaagatatctggaggaactattgcagta
agcggtggaacagtgatacctggagctgggaacaaaagcaaaagcaagactaaagcaaac
actattaccctggtaggagcaaagaagagaaagagaaacgcctcttcagacgtgtctgat
ggggagctgagcccaccctcacctgtccctatggaggatgacatgattatgaagagacgc
tccaaccgggtggtgaaaaggaagaaatataccgaagacttggatattaaaataacagac
gatgaggacgagcaggaagatgtagacgtgaccacgacggcggcagcagttgcctcgatc
agcggaggggccgccgctcagctcaaacaggaagtggagcttgacggggatgggctgccc
agcatgcagttctttgtagaaaatcctagtgaagaagatgctgccattgtagataaagtc
ttgtccatgaggataaccaagaaagaggtgtcaccgggccagtataccaatattgaggaa
ttcttcgttaaatataaaaactattcctacttgcactgtgagtgggccactttgaatcag
ttggagaaagataagcggatccatcaaaagatcaagaggttcaagaccaaacacgcacag
atgaggcatttattccaggaggaagaggagcccttcaacccagactacgtagaagtggac
aggatcctcgacgtgtcccacagtgtggacaaagacaacggagagccggtcatctactac
ttagtgaagtggtgctctctgccctatgaggacgctacgtgggagctgaaggaggatgtt
gatgagggaaaggtggaagagtttggcaaactcctgaacagacaacctcgcctgaagaaa
atggtccgcccgtctgccagcgcatggaagaagctagaggagacccgagaatataagaac
ggcaacacactaagagagtatcagctggaaggagtcaactggcttctgttcaactggtac
aacaggcagaactgcatcctggcagatgaaatgggtctggggaaaaccatccagtccata
acgctgctgtcagagatttacgctgctggagtccaaggcccattcctggttattgccccg
ctctccaccatcactaactgggagagggagttctccacatggaccaacatgaatgccatc
gtttaccatggaagcctcgccagcagacagatgatccagcagtatgagatgtactgcaaa
gatgataagggacatttaattccaggagcgtacaagtttgacgctctcatcacaactttt
gaaatggtgctctctgactgcccagagctcagggagatctcatggcgctgtgtgatcatt
gacgaggctcaccgcctcaaaaacaggaactgcaagctgttggacagcttgaagatgctg
gacctggagcacaaagtgctgttgaccggcacccctctccagaacaccgtggaggaactc
tttagtcttctccacttcctggaaccagctcagttcccctctgagatcgagttccttcga
gagtttggagaccttaaaacggaggagcaggttcagaaactccagtctattttaaagcca
atgatgttgcgcagactcaaagaagatgtggagaagaatctagcacccaagcaggaaacc
atcattgaggttgagttgaccgacatccagaagaagtattaccgagccattctggagagg
aactttagtttccttagtctaggagccaacagtaacagcaacgtcccaaacctcctcaac
acaatgatggagctccgaaagtgctgcaaccacccctacctcattaatggtgcggaggag
aagatcgtgacggagttacgagaaaagtacgaccccctggcccctgactttcatttgcag
gccctaattcgctccgccggcaaactggtgctacttgataaactgctgcctcgcctcaag
gctggcggccacaaagtgctcatcttctctcagatggtgcgctgcttagacattctagag
gactacctcatcaacaagagatacctttatgagcgaatagatggcagagtgcgtgggaac
ctgcggcaggcagccatcgatcgcttcagcaagccagactcggaccgcttcgtcttcctt
ctttgtacccgtgctggcggtctcggtatcaacctgacagctgctgacacctgcgtcata
tttgactctgactggaaccctcaaaacgacctgcaggctcaagcaagatgccatcgtatc
ggccagtcaaaggcggtcaaggtctaccgcctcatcaccaggaattcgtacgagagggaa
atgctggacaaagcaagtctgaagcttggtttggatcgcgctgttctgcaaagcatgagc
ggcaacaaggatagtaacgtcaacgggctgcaacagttctctaagaaggaaattgaggac
cttcttcggaaaggagcttatgccgccatcatggatgaaaatgacgaaggaagccggttc
tgcgaggaagatatcgaccagatccttcaacgacgagccaccaccattactatcgagagc
gaaggcaaaggttctacattctccaaagccagcttcgtggcctctgagaaccgcactgac
atcgccctcgatgaccccgagttctggcagaagtgggctaagaaagcggatatcgacatg
gataccattaatcgaaagaacactcttgtgattgacactcccagaattcggaagcagacc
cgccagtactccagtttacgcggtgaaggaggcgacctgtccgatttggacagtgacgac
gagtatccgcccgccaattccagacactcgcggtcatctcgccgctccgaccgccacagt
gggggaggttacggtcgcaccgactgtttccgagtggagaaacacctgcttgtctacgga
tggggccgctggagggatatcttggctcatgccagatgtaaaaggcgtctgagtgaacgt
gatgtagaaaccatctgccgtgtcattctggtcttctgtctcatgcactatcgtggtgat
gagaacatcaagagcttcatctgggagctgattactccaccagaaaatggccgagaaccc
caaacactactgaaccactctggtctttctatcccggttccaagaggcaggaaaggtaag
agagtcaaggcccagagcacctttgatgtccagaaggtggagtggatccgcaaatataat
cccgacactttgctgctggacgacagctaccgcaaacacctgaagcaccagtgcaacaaa
gtgttgctcagggtccgtatgctctactacctgaagcaggaggtcattggagaccatgca
gattctgtcctgaaaggagctgacattcgggatgttgatatctggatgccagagatggaa
cagcaggaggtacctgctgcctggtgggactcagacgcagaccgctcgctgctcgctggt
gtcttcaaacatggttatgagatgtacactaccatgcgtgccgatccctgcctctgcttc
gtggaaagagttggtcggcctgacgacaaggcaattgatgctgagcagcacaccggggac
accgagctgggagatgatgccgactttgataagttttcagaagatcccgagttcaagcca
gcatctagagtctccaaagatctttttgatgagcctgactctatgaacgttgacgatgag
atttcagtggaagacaagacggtaccaacagtaacagaaagctcaacgagtcagagtgga
gtgtgcgagtggccctcaagctcgtcgctaactgcacggttgaggcgactgatcacagcg
taccagcgcagctacagacaggagcagctgaagatggaagccgaggccaaaggtgaccgc
agacggaggcggtgcgaacaggccagcaagctaaaggaaatcgcacggcaggaacgacaa
caaaggtggacgcggagagaagagagtgatttctaccgcgtggtgtccacgtttggagta
gagaagattaagaaggagcccggcatttcagaggagggagaggtggagttcgactggaac
cgtttccgaactttcgcccgcctggataaaaaaaccgacgagagcctcagtcgatacttc
cgttcattcctcgcaatgtgccggagagtgtgccacctccgcccaggtcgtggtgaagat
ccttcagagctgactcaaactgtggctcccatcactgaagaacgtgcctcccgtactctg
taccgcatcagccttctgcgccgccttcgtgagcgagtcctccctcacccctccctggag
gagcgtctcctcttggccccacgcagctctgagctgcctgcttggtggaccatgcccgac
cacgatcggcagctaatgctcggcgccgcactgcacggcgtcagccgtactgagctttcc
atcttcccggacccgcagttcactttcagctcggctcgcgacgagttcatccagaaccag
caggctctaccgccccctcctcctcctccacctccaccaatcatgacactcggccagcct
aagatggagttggacttaacgagtatgaagcgggaggaaacagatgagagcgctcgactg
tttggggggggtatgagtactgagctgcagagcacacctttgagtcaccacgctgtcaaa
gtgcaaggtcaggactggagctttaagagcagcagggaacgatcggaaaaagcaggaaga
aaaggtggaggagggtccgactcggattcggattctgactcggggtcttcgtcctcggag
cgatccgggagcagcgatgacagcggagacagcgacgaggaggtagaaggaaggggtatg
aaggtgggagatgtggatgaagaaaatagcttactctccatgactccgtctcaggatagc
atacttccacctgaacctatccgagtcgagtggcccaaggaccgtgtgctgatcaaccgc
ctggataacctgtgcaccctcgtgctgaccggccagtggccctcgggccgacgttacatt
cctgaagctcagctcaacccgagctcagagctgttgggagaggagatggcctaccccagg
gtcatccgtaaacccatcagcacaccggggggcatcgggccggagggagaagacggagag
ttcacagtcaaactcctcaaggaagaaggcctgaagctgacgttctccaagcaggcgcta
atgcccaacgggtcaggtggagagagcagcggacgaaagaagcggaaagaccaagagctg
tcagagtttgacgaactcgattcactggaacgtacccctcgacgaagggaccctcccacc
tggttgaaagagaatccagattatgaggtggaaggagacatgttggagctgctggttaac
aggagcaaaaggaagaggagacggcgagcaaataaacctctgacaggcactgagaaggtc
aaagtgatcaacatgctgacaggaaagaaggttggagctgctttctcgccgatgcttcag
gatctaaaggagtatctggaggagaatcctaatatcgccgtttcacccgagtggtctgaa
accgttcaaaaatctggtctgctgcctgaatccctcttccaccgcctgctgtcagagaat
tcagagattccaaagaaaagtcaccggcggcgtcaccaccaccatcaccaccaccaccac
catcattaccacactcctgaccccacgcctgaagaccctaacttggacggagtagaagaa
gagactctggtttccgacggagcctacatgatggacgaggaggacttggagacgccccat
cacttcctcaccagcccggactttgacgttaaaatggggggcggtgacagcctctctcaa
ggcgactacgacagctcggatcaagaagcgctactggaagacgtcatcctggcgccgaag
gactctgactcctcatcaagctcagaagactga
DBGET
integrated database retrieval system
