Cyprinodon variegatus (sheepshead minnow): 107087816
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Entry
107087816 CDS
T06110
Name
(RefSeq) protocadherin-1-like isoform X1
KO
K16498
protocadherin delta 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
107087816
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cvg01009
]
107087816
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cvg04515
]
107087816
Protein phosphatases and associated proteins [BR:
cvg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107087816
Cell adhesion molecules [BR:
cvg04515
]
Cadherins
Protocadherins
107087816
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_FAT4_N
Cadherin_2
Cadherin_CELSR2_9th
Fibulin_C
NnrU
Motif
Other DBs
NCBI-GeneID:
107087816
NCBI-ProteinID:
XP_015235081
Ensembl:
ENSCVAG00000007012
UniProt:
A0A3Q2CK50
LinkDB
All DBs
Position
Unknown
AA seq
1228 aa
AA seq
DB search
MGALRAEGCNTSRVMLSGREMMILKWEVLWLLASMLMVSCFAVPTDVLYRVPEEQPPNTL
IGSLAADKGLPDTGHLYKLEVGAPYLRVDGKTGEIYTTEVPIDREHLRECQNLFGEKCFL
EFEVSITDMVKGIGSGPRLIEGLIEVLDINDNTPQFSSPILTLAIPENTYAGAYFPIPMA
TDKDSGSNGVAEYSLTHGPDADRLFNLQVDPEEKQPQLVVLGNLDREKKDSYDLNIRVVD
GGKPPRASSALLRITVTDQNDNVPKFERNHYEAELPENSPLGHSVLQVRANDADTGTNGE
IDYSFYQVSETVQRLLRIDRSTGIIYVKGMVDREDTSFLKFFVVARDRGPNPKSSKVLVT
IIFKDQNDNAPAIEIRGIGLLIHQDSVANISEDMPVGTPVALVQVSDSDEGENAVVTCVV
AGDVPFELQPASESANDRKRKYFLKTTTLLDYERIKDYRIEIVAVDSGNPALSSTNSLKV
QVTDVNDNTPTFSPPLLEVDFAEGNQPGDKVLDVVATDADSGINAEMIYSIIEPSATRLF
EVDAHSGEVRVKNTLDREEVERYEFHIAAADKGLPSKTGTATVVVNVLDRNDNEPKFMLN
GYSFSVIENMLPLNPVGVVTVTDADKGENSRVTLFVDPDNGKFVIQNGTGTILSSISFDR
EKESTYSFRLKAVDGGEPPRSSYVGVTINVLDENDNAPYVTKPSNSSYTYLTPVTPPETR
VEVVEAEDIDAGPNAELYYSITGGNPYGLFQISPTSGEITLAKEFSGKHNGLHRLVVRVS
DRGKPPRHTTALVHVFVNETKSNVSLIEALVGHSLYTPLDRDIAGDPNYAYSQHTNIMYG
ILAGVAVVILVIVAVVFIRHHLQKDTKSGYQAGKKESKDLYTPKQGPKNGKGKKSKKPKA
PKPTKPLEEDEEASLQKGLKFNLIDEVTDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQ
LQPQSPSASKKHQAVQDLPATNTFVGTGDNNSTGSDQYSDYSYKGNPPKYNNKQLPHRRV
TFSTSNQAQDLQDVSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIG
EMEHPENDLRPLPDVAMTGNCTRECTEFGHSDSCWMPGQPSPNRKVSKSAPKLSTFVPYQ
EMDRQEHPMANGSPKPMVTEERGTGGSAGSSSKVASMRFMTPYSSAYPGTGDSSGKDYGL
EEIPLSQAAEYNSTTTPTGQTSKREIYL
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgctcagagctgagggctgtaacacttccagagtgatgctgtctggcagagaa
atgatgatcctcaagtgggaagttctgtggctcctggcctccatgctgatggtctcctgc
tttgctgtgcctaccgatgttctgtatcgggttcctgaggagcagccgcctaacacgttg
atcggcagcctggcagcagataaaggccttcctgacactggacatctatacaagctggag
gtgggtgccccatatctgagagtggacggcaaaaccggggaaatctacaccactgaagtc
cctatcgaccgtgagcacctgagagaatgccaaaacctgtttggtgaaaaatgcttcctg
gagtttgaggtgtcgatcactgacatggtgaaagggatcggctctggaccacggctgatc
gaaggtctgattgaggtcctggatatcaatgacaacacaccacagttctcctctcccatc
cttaccctggctattccagagaacacctacgctggcgcttactttcccatcccaatggca
acagacaaggactctggttcaaacggggtggccgaatactccctgacacatggaccggac
gctgatcggctcttcaaccttcaagttgacccggaggaaaagcagccacagctggtggtc
ctagggaaccttgatcgtgagaaaaaggactcgtatgatctgaatattcgtgtcgtggat
ggagggaagccacccagggcgagcagtgctctactgcgaatcacagtgactgatcagaac
gacaatgtcccaaagtttgagagaaatcactatgaggctgaacttccggagaacagccca
ctgggacattctgtgttgcaggtcagagccaatgatgctgacactggaacaaatggagag
atagactacagcttctatcaagtatctgagactgtccagaggcttctgcgaatcgaccgc
tcaactggtatcatttacgtcaaaggaatggtggacagagaagacactagctttctcaag
ttctttgttgttgccagagatcgtggacctaatcccaagagttccaaagtcttagtgact
atcattttcaaggaccaaaatgacaatgcgccagcaatagagatccggggtattgggttg
ctaattcaccaggacagtgtggctaatatctcagaagacatgccagttggtacgccagta
gcactggtgcaggtgtcagacagtgacgagggggaaaatgctgtggtgacatgtgtggtt
gctggtgatgtcccattcgaactccaacctgctagtgagtcagccaatgatcggaagaga
aaatacttcctgaaaacaactactctcctggattatgaacgtattaaggattacagaatt
gaaatagttgctgtggattctggtaacccagctctgtcaagcaccaattctcttaaagtt
caggtcacagacgtgaatgacaacaccccaacattttcaccgccattgcttgaagttgac
tttgcagagggtaaccagccaggggacaaggtgctagatgttgtggccactgatgcagat
agtggtatcaatgcagagatgatttatagcataattgagccctcagctacccggcttttt
gaagttgatgcccactctggggaggtccgtgtgaaaaatacactggatcgagaggaggtt
gagcggtatgagttccacattgcagctgctgataagggccttccaagtaaaactggaact
gcaacagtggtagtaaatgttttagaccgcaatgacaatgaacccaaattcatgcttaat
ggctatagcttttctgtcattgagaacatgcttccactaaatcctgttggtgtagtgact
gttactgatgccgataaaggagagaattccagagtgacactgtttgtagatccagataat
ggcaaatttgtgatccaaaatggcacaggaactatcctctcaagcatttcatttgaccgt
gaaaaagaaagcacctacagttttcgtttaaaggctgtggacggtggagaaccaccacgg
tcctcctacgttggagtgactattaatgttctggatgagaatgacaatgccccctatgtt
accaaaccatccaactcatcctacacctacctgacacctgtcacacctccagaaacacgc
gtggaagtggttgaagcagaggacattgatgctggacctaatgctgagctgtactattca
atcacgggaggaaacccttacggccttttccaaatctcacccacaagtggtgagatcaca
ctggcaaaggaattctctggcaagcacaatgggcttcaccgacttgttgtgagggtcagt
gatcgcggcaaacctcctcgccacacaacagcattagtccatgtgtttgtgaatgaaacc
aaatccaatgtgtctctcattgaggcactggttggtcacagtctttacacacccctggac
agagacattgcaggagacccgaactacgcctacagtcagcataccaatataatgtatggc
attcttgcaggtgttgctgtcgtaattctggtcattgtagcagtggtgttcattagacac
cacctgcagaaagatactaagagtggttaccaagctggcaagaaggagagtaaggatctt
tatacgcccaagcagggtccaaaaaatgggaagggaaaaaagagcaaaaagccaaaagct
ccaaaacccaccaaaccattggaagaggatgaggaggccagtctgcagaaaggtctaaag
tttaaccttattgatgaagtcaccgacagccccagaattcatctgcctcttaactaccca
cctggaagccctgacctgggccgtcactacaggtccaactctcctttgccatctattcag
ctacaaccacaatcaccctctgcctccaagaaacaccaagctgttcaggacctccctgca
accaacaccttcgttgggacaggcgacaacaactccacaggatcggatcaatattcggat
tacagctacaagggcaacccacccaaatacaacaacaaacagctgccccaccgccgagtc
accttctccacctccaatcaggcccaggatctgcaggatgtatctcagcacagctactac
gacagcggcctggaggagtcagagaccccaagctccaagtcatcatctggccctcggatt
ggaccacttgctctgccagaagaccactacgagaggaccactcctgatggcagcatcggt
gagatggaacacccggagaacgatctcaggcccctcccggacgtagcaatgaccggtaac
tgcacgcgtgagtgcacagagtttggccactctgattcctgctggatgcctggtcagcct
tcccctaaccgcaaggtttccaagagtgcacccaagctctccacctttgtgccttaccag
gaaatggacagacaggagcaccccatggccaatggcagcccgaagccaatggtgaccgag
gaacgcgggacgggtggcagcgccggcagcagctccaaggtggctagcatgaggtttatg
accccttacagcagtgcctatcctgggactggagactcgtctggtaaagactatggcctg
gaggagataccactgagccaggcagcggagtacaactccacaaccaccccaactggccag
acctccaagagggagatctacctgtga
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integrated database retrieval system
