Cyprinodon variegatus (sheepshead minnow): 107087877
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Entry
107087877 CDS
T06110
Name
(RefSeq) LOW QUALITY PROTEIN: Down syndrome cell adhesion molecule-like protein 1 homolog
KO
K06768
Down syndrome cell adhesion molecule-like protein 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cvg04515
]
107087877
Cell adhesion molecules [BR:
cvg04515
]
Immunoglobulin superfamily
DSCAM family
107087877
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
fn3
ig
Ig_2
Ig_DSCAM-DSCAML_C
V-set
C2-set_2
Pur_ac_phosph_N
Ig_5
Ig_6
C2-set_3
Sp38
Interfer-bind
Receptor_2B4
ChitinaseA_N
DUF1461
DUF6034
Motif
Other DBs
NCBI-GeneID:
107087877
NCBI-ProteinID:
XP_015235184
Ensembl:
ENSCVAG00000022579
LinkDB
All DBs
Position
Unknown
AA seq
2048 aa
AA seq
DB search
MKDAVMRRGGDMGGAEALLVSPPRLAGQQGWKHLPGAQXQHGEPPGQRNAPHTNQDYQQF
LKNIPALYGMWLVTLLLLYSLQEVHSEDASSTRLYFVNASLQRVTYSSSVGVSLPCPAGG
TPSAILRWYLATGDDIYDVPHIRHVHANGTLQLYPFSPSAYNSYIHDNDYFCTAENQAGK
IRSPNIRIKAVFREPYTVRVADQRSMRGNVAVFKCLIPAAVQEYVSVVSWERDTVSIVPG
NRFSLTSFGALYISDVQKEDALSTYRCITKHKYSGETRQSNGARLSVMDPSESSPTILDS
FQAGEVYAGQSIELPCIAGGYPSPTVRWLKDGRSLPSDARWTRRLTGLTISDLRQEDSGS
YACEVTNSFGSKEVSGQLHVIDPLRVTLSPKNMKTGISSTLFFTCTVEGSPEYTITWFRN
TELIVPDQHISMQGQHNDTLQIVAAQKFHSGAYQCFASRKGHTAQDFSIILLEDGTPRIV
SSFSERVVNPGEPFSLMCAAKGAPPPSITWTLDEEAVVRDSTYKTSQYTLSDGLTVSHVN
VSSPLIRHGGVYRCVARNSAGSAEYQARINVRGQPQIRPMRDITAVAGRNTYITCRVIGY
PYYSIKWLKDGMQLPDNHRQVVFENGTLRLTDVQKGADEGTYLCSVLIQPQVSINQTVHV
TVKVPPLIQPFDIPSTSVGKLMYIACVVSSGDMPIRITWHKDGQLIVPGSASGVAIETKE
FMSSLQISKVTLKHNGNYTCIASNAAANVSWERQLIVTVPPRFVVQPNNQDCIYGKAGVL
NCSVEGYPPPKVMWKHAKGVGNPQQYHPVPLTGRIQIMSNGSLLIRHVLEDDRGYYLCQA
SNGVGSDISKSMILTVKISFQLNPAERGDSVFFSCHAINSYGEGRGLIQLTVQEPPDPPE
LEVREVKDRSMNLRWIQRFDGNSIITSYDIEYKNKSDSWDHMYTTRNISPTNNQANIVEL
HPACVYSIRMYSYNKIGRSLPSKELTISTEEAPPDGPPMDVVLQPMTSQSIRVTWRAPKK
ELQNGVIRGYQIGYRENGPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRA
GTGPSSTEINATTLEDVPSEPPQNVRAISVTSDEAVITWSEPPRMTLHGVLKGYRVVFWS
LFPDGEWGEMQNITTTREQVELRGLEKFTNYSVQVLAYTQAGDGVRSNVLYIQTREDLPG
PPAGIKAVPSSPSSVVVSWLPPLKPNGVIRKYTIYCSSPGSGQPAPSEYEANPEMLFYRI
THLSRGKQYHIWSAAVTTAGRGNISAKVTVEPAGKVPAKILSFGGTVTTPWMKEVRLPCS
SVGEPAPTIKWTKDSEDSTLPVTADSQRQILSNGTLVLRSVKAEDSGYYTCTATNTLGFD
TIIVNLVVQVPPDQPRLTVSTTSTSSITLAWIPGDNGGSSIRGFVLQYSVDNTEEWRDVF
ISSSERSFRLDNLRCGTWYKVKLAAKNSVGSGRISEIIEAKTHGREPVFNKDQPLLTHIN
STHAGLNLQGWTSGGCPITDLMLDFRPKGTWAWQSLKANSTNQLFLSELREATWYELKMK
ACNSAGCGNQTSQFATTDYDGSTIPPIKSARGEGDDVKKLFSIGSPVILVTLGVALLFII
RKKRKEKRLKRLRDAKSLAEMLISKNNRSIDTPVKGPPQGPRLHIDIPRVQLLIEDKEGI
KQIGEDKAAVPVTDTEFSQSVNPQNFCTGVALHHQALIQNSGPLIDMSDIRPGTNPVSRK
SIKSAHSSRNRYSSQWTLSRPSQSTASARTLTSDWRTMGSHGITATESDSYSASLSQDTD
KGRNSMVSTESASSTYEELARAYEHAKLEEHLQHAKFTITECFISDSSSDQMTTGTNDPA
DSMTSLSTPSEPGICRFTASPPKPQDYDRGKNVAVPIPHRANKSEFCNLPLYMKSDPFFR
KQGDSLHDPCPAVPPREASIRSLTQRAYHTQGRHKTLDSAKQQALTLGHSGLGSLGASSG
TSTLPQRTLTMPSSGNAATASTSSTSSNPAGSNKVGGSRDSLLESSSSALGRLQKQSVGA
YSKSYTLV
NT seq
6147 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatgctgtgatgaggagaggaggggacatgggcggggctgaggcgcttctcgtt
tcccctccacgcttagcggggcagcagggctggaaacacctcccgggagctcagntccag
cacggagagccgcctggccaaaggaacgcgcctcacactaaccaggattaccaacaattc
ctgaaaaatatacctgctctttatggcatgtggcttgtaactttactcctgttgtactct
ctccaagaagtacacagtgaggatgctagctctaccaggctctactttgtaaacgcctcc
ctgcagagggtaacctactccagctcagtgggggtgtccctgccctgtcctgcagggggc
acccccagcgccatactgcgctggtacctggccactggtgacgacatctacgacgtgccc
cacattcgccacgtgcacgccaatggcaccctccagctgtacccattctcgccctcggcc
tacaacagttacatccacgacaacgactacttctgcaccgccgagaaccaggcgggcaag
atacgcagcccgaacatccgcatcaaagctgttttcagggaaccctacactgtgcgggtg
gccgaccagcgctcaatgcggggcaacgtagcagtgttcaagtgcctcatccctgctgcc
gtgcaggagtacgtcagtgtcgtgtcatgggaaagagacaccgtttccattgttccaggt
aaccgcttctctctgacctcctttggagctctttacatctctgatgttcagaaagaagac
gccctctccacataccgctgcatcaccaagcataagtacagcggtgaaacacggcaaagc
aacggggccaggctttcagtaatggaccctagcgagtcctcgcccaccatcttggacagt
ttccaagccggggaggtgtatgcaggccagagcatcgagctcccctgcatagcgggcggc
tacccaagcccaaccgtgcgctggctgaaagatggccgatctctgccctcggacgcccgc
tggactcggcgcttgaccgggctgaccatcagcgacctgaggcaggaggacagcggcagc
tacgcctgcgaggtcaccaacagttttggctcaaaggaggtgtctggacagcttcacgtt
atagatccactgcgagtgacgctctctccaaagaacatgaaaaccggcatcagcagcaca
ctgttcttcacctgcaccgtggagggttctccagaatacaccatcacctggttcaggaat
accgaactcattgttcccgaccagcacatttccatgcagggacaacacaacgacacgctt
cagatcgtggcagcacagaagtttcactccggagcataccagtgcttcgcttccagaaaa
ggccacacagctcaggatttttccataattctcttagaggacggtactcctcgtattgtg
tcttccttcagcgagcgggtggttaacccgggtgagcctttctccctcatgtgtgccgcc
aaaggagccccgccgccctcaatcacttggactttggatgaggaggccgtggttcgagat
tccacgtacaagaccagccaatacaccctgtcagacggcctgaccgtgtctcacgtcaac
gtcagcagcccgcttattcgacatgggggagtgtatcgttgcgtcgcacgcaactcggcc
ggtagcgccgagtaccaagcgcgcataaacgtaagaggtcagcctcaaatcagacccatg
agagacatcacagcagtggcaggcagaaacacgtatataacgtgccgcgtgatcgggtac
ccatactactcgatcaagtggctgaaagacggcatgcagctgcctgataatcaccgtcaa
gtggtgtttgagaacggcaccctgaggctgacggacgtgcagaagggcgccgacgaaggg
acatacctctgtagcgttttgatccagccccaggtgtcaatcaaccaaaccgtccatgta
acggttaaagtgccgccgctcatccagcccttcgacatcccctctacctcagtggggaag
ctcatgtacatcgcctgcgtggtttcatccggggacatgcccatacgcatcacctggcac
aaagacggccagctcatagtgccaggctccgcctctggcgtcgcaatagagaccaaagag
ttcatgagctccctgcagatctccaaggtgacactgaagcacaacgggaactacacctgc
atcgccagcaacgccgcagccaacgtcagctgggagagacagctgattgtcaccgtgccg
ccccggtttgtggttcaacccaacaaccaggactgcatttacggaaaagctggagttctg
aactgctcagtggagggttatccgcctccgaaagtcatgtggaaacacgccaaaggtgtt
ggaaatccacagcagtatcaccccgtccccctcaccggccgcatccagatcatgtcgaac
ggctccctgctcatccgacacgtccttgaggatgaccgaggctactacctctgtcaggcc
tccaacggcgttggctcagacatcagtaaaagcatgatcctgactgtaaagatttccttc
cagctaaacccagccgagcgaggagattcagtcttcttctcctgtcacgccatcaactcc
tatggagagggccgaggactcatccagctcaccgttcaagaaccccctgatcctcctgag
ctggaggtgagggaagtgaaggacagaagcatgaacctgcgttggatccaaaggtttgat
ggcaacagcatcatcaccagctatgacattgagtacaagaacaaatcagactcttgggat
cacatgtacaccaccaggaacatttcacctacaaacaatcaagctaatatcgtggagctg
catccagcttgtgtttacagcatccgcatgtattcttataacaaaatcggccgcagcctt
cccagcaaagagctaactatcagcacagaggaagcgccacctgatgggcccccgatggat
gttgtactgcagccaatgacgtcacagagcatacgagtcacatggagggctcctaaaaag
gagctgcagaacggcgtgatccgaggctatcagatcggttacagggagaacggaccaggc
agcaacgggcagtacagcatcgtggagatgaaagcaacgggggacagcgaggtgtacacc
ttggacaacctgaagaagtttgctcagtacggcgtggtcgtccaggcttttaacagagcc
ggaaccggaccgtccagcaccgagatcaacgccaccacgctggaagatgtgcccagcgag
cccccgcagaatgtgagagcaatctctgtgacgtcagacgaggcggtgatcacgtggtcg
gagccgccacgcatgacgctgcacggcgtgctgaaaggctacagggttgtgttttggtcc
ctcttcccggacggagaatggggagagatgcagaacatcaccaccacacgggaacaagtg
gagctccgcgggcttgagaagttcactaactacagcgttcaggtcctggcctacacgcag
gccggagatggagtccgcagcaacgtgctgtacatccagacacgcgaggaccttcccggt
ccgccagccggcatcaaggcggttccttcctctccaagcagcgtggtcgtgtcttggtta
ccgcctctcaaaccaaacggcgttatccgcaaatacaccatttactgctccagtccagga
tctgggcagccggcgcccagcgagtacgaggccaaccccgagatgctcttttaccgcatc
acgcacctcagccgtggcaagcagtaccacatctggtctgcagcggtgacaaccgctggc
cgaggcaacatcagcgcaaaggtcaccgtggaacctgctgggaaagttccggccaagatc
ctttccttcggggggacggtgaccacaccctggatgaaggaagtgcgtctgccctgcagc
tcggtaggagaacccgcccccaccatcaaatggaccaaagacagcgaggactccaccctt
cctgtgacagctgacagccagcggcagatcctgtccaacgggacgctggtgctgcggtca
gtcaaagcagaggattctgggtactacacctgcacggctaccaacaccttgggctttgac
accatcattgtgaacctggtggttcaagttcctcctgatcagccccgtctgactgtctcc
accacctccacctcctccatcaccctggcttggattcctggggacaacggaggaagttcg
atcagagggtttgtgctgcagtactctgtggacaacacagaggagtggagggatgtgttc
atcagctccagcgagcgttcctttcggttggataatctgcgctgcggaacgtggtacaaa
gtcaagctggctgctaagaacagcgtcggctcgggtcgcatcagtgagatcatcgaggcc
aagacgcatggaagagagcctgtgtttaacaaggaccagccgctgctcacacacatcaac
tccacacacgcaggactgaacctgcagggctggaccagcggcggctgccccatcaccgac
ctcatgctggacttcaggcccaaaggcacgtgggcctggcagagcctcaaggccaactcc
accaatcagctgttcctcagtgagctgcgagaggctacgtggtacgagctcaaaatgaag
gcctgcaacagtgctggctgtggaaaccagacctcccagtttgctaccaccgactacgac
ggcagtacgatcccgcccatcaaatcggcccgtggggaaggggacgatgtgaaaaaactc
ttctccattggctctcctgtaattctggtcactctaggcgtggctttactcttcatcatc
cgcaagaaacgcaaggagaagcggcttaaacggctcagggatgcaaagagcctggctgaa
atgctcatcagcaagaacaaccgcagcatagacacgcctgtgaagggccctccccagggg
ccgaggctccacatcgacatcccgcgagttcagctgctcatcgaggacaaggagggaatc
aagcagataggagaggacaaagccgcggtgccggtgacggacacagagttcagccagtcc
gtcaaccctcagaacttctgcaccggagtggctctgcaccaccaggccctcattcagaac
tcagggcctctgatcgacatgtcggacatccgtcccggcaccaaccctgtgtcaaggaag
agcatcaaatccgcccacagctccaggaacagatactccagccagtggacgctgagtcga
cccagtcagtccacagcttcggctcggactctgacatcagactggcggacgatgggatcc
cacggcatcaccgccacggagagcgacagctacagcgccagcctctcgcaggacacggat
aaaggtcggaacagcatggtgtcgacggagagcgcgtcctccacctacgaggagctggcc
agagcgtacgaacacgccaagctggaggagcacctgcagcacgccaagttcaccatcaca
gaatgcttcatctcggacagctcgtctgaccagatgaccacgggtaccaatgacccggca
gacagcatgacctccctcagcacgccgtctgagccgggcatctgccgcttcaccgcctca
ccgcccaaaccgcaagactacgaccgcgggaaaaacgtggcggtgcccattccccaccgg
gcgaacaaaagtgaattctgcaatctacccctttacatgaagtcggacccattcttccgg
aagcaaggggactccctgcatgacccatgtccagctgtgccaccgcgggaagcctcgatt
cgcagcctgacgcagcgggcgtaccacacccagggccgccacaagactctggactcggcc
aagcagcaggcgctgacgctgggtcactccggcctgggcagcctgggggccagctcgggc
acctccaccttgccccagagaactctcaccatgcccagctccggcaacgcggcgacggcc
tccacgtccagcaccagcagcaacccggccggcagcaacaaggtgggcggctccagagac
tcgctgctggagagcagctcctcagccctggggaggctgcagaaacagagcgtgggggcc
tattccaagtcctacacgctggtgtag
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integrated database retrieval system
