Cyprinodon variegatus (sheepshead minnow): 107087902
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Entry
107087902 CDS
T06110
Symbol
thsd1
Name
(RefSeq) thrombospondin type-1 domain-containing protein 1 isoform X1
KO
K24433
thrombospondin type-1 domain-containing protein 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cvg04990
]
107087902 (thsd1)
Domain-containing proteins not elsewhere classified [BR:
cvg04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
107087902 (thsd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
THSD1_N
THSD1_D3
THSD1_D2
TSP_1
TSP1_spondin
TSP1_ADAMTS
TSP1_CFP_C
Motif
Other DBs
NCBI-GeneID:
107087902
NCBI-ProteinID:
XP_015235221
LinkDB
All DBs
Position
Unknown
AA seq
925 aa
AA seq
DB search
MPQAISLLAFLLVLIGYAFAGLSIWPSFHVALSNGSVFVDFSVKSKNNTISNMSLSLVNM
ETNTSVLSRPLPGHQLVGREEFDCSCFLYAGTFRFLLRQTSITTIPNANGSDVSHTVTSA
SWWSSELQVQWPTFHISVERAGNHSEYFQVGLSTNEHFQACSSGMDSALLLEVSYSEYNQ
IGRNTTNKVRGQIRKPIKPLRSQRVELPCAFWFTERDFITVVIRSPHTEQEVKNSGPLYP
SRIFPYKLLVENVNAYKSGCMDTMTVKMITPPCTHVNGKIQLYNASIGKGGDFTSTVMEP
EPEESSLLAFNWLTQEENETEFNCSVFYPGRNKYCFRFVFNFSRLSSPAEKCLVVYRSAE
SWGPWQPWSVCSVSCGEGVRERARECLLPSGVEGVKCAGMVKERSPCSLEDCNMLSSPSP
SLPSVPVGASPFGGNMIVVLGISICLAVIMVTIVVTVWRKLYQTPQCSSVHRGSIHPPGG
RKLSDEASICGHSLQRPSLSDGHFPSAAVISQKRPSLGAPPLSPQAPVMTLSQDPERLSP
TGQKVLPPIFGYRLAQQQLKEMKKQGLKEATQLYHVSSSPVHDTVVETCASPTTSPVPSP
TGFVCSALPVGTQDTANSSHVGTSTPLSEASRSRVEFVSGPSDSGRSSRWRDRTADWVEM
VERSKMAGLRGGDTVSGNSYNRNPNFRRTSSFNDTKLLSTSSAQSMHFRERSMTQVGSRT
LPEGSSWTKGKWERQPHPSYPIPEHRVSDWSTTKPQIHSQRRTSQNTQVKHMGTNTKTSL
SDKHVKDFSGTGERKTRVDSGGRGGDLVSGIGGPSLTLSWSREVNQLDVERAERAEQNWN
RRGPSPIQRNILARKLKEAQLCSGGKGRQRSSSFNMSSSECRRDWCQSLPISRDQSSSGG
SPYRLSEAEQRMLDLDLSPVFVQKE
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgccacaggctatctctctgctggccttccttcttgtgctcataggatacgcttttgca
gggctcagtatatggccctctttccacgtggccctaagtaatggaagtgtatttgtggac
ttcagtgtaaaatccaaaaacaacaccatcagcaacatgagcctctccctagtcaacatg
gaaaccaatacctcggttttgtccaggcccctccccggccaccaactggtcggtagggag
gagtttgattgttcctgcttcctgtatgcaggaactttccggttcctgttgaggcaaaca
agcatcactactattcccaatgctaatggctcagatgtcagccacacggtgacctcagcc
tcctggtggagctctgagctgcaagtgcaatggcccacttttcacatttctgtggagagg
gcaggaaaccattctgaatattttcaggttggcttatccactaatgaacacttccaggct
tgctccagtggcatggactcagccctcctcttagaagtcagttactcggagtacaaccag
attggacgaaacaccactaacaaagtccgaggtcaaatacggaaaccaatcaagccactt
cgttcgcagagagttgagctgccctgtgctttctggttcacggagagagacttcatcaca
gtggtcatacgatcccctcacacagaacaagaagtgaagaactccggacctctctatcca
tcccgtattttcccctacaaactactggtggaaaacgtcaacgcttataaaagtggttgc
atggacacaatgactgtgaagatgataacgccaccatgtacccatgttaatgggaaaata
cagctatataacgcaagtattggaaaggggggtgattttacatccactgtgatggagcct
gaaccagaggaatcttctttgctggcatttaattggctgacacaagaggaaaatgagact
gaattcaactgctcagttttttacccaggaaggaataagtactgcttccgctttgttttc
aattttagtcgattgtctagtccagcagagaagtgtctggtggtttacagaagtgcagaa
tcttgggggccctggcagccatggagtgtttgcagtgtgagttgtggagaaggggtgaga
gaaagagcacgggagtgtttgctgccctcaggtgtggaaggcgtgaagtgcgctggcatg
gtgaaggaacggtctccatgctccctggaggactgtaatatgttatcttctccatctcca
tccctgccttctgtacctgtgggagcatcgccgtttggtgggaacatgattgtggtgttg
ggtatttcaatctgcttggcagtgatcatggtgactatagtggtgactgtgtggagaaag
ctttaccagactcctcagtgtagctcggtccatagaggctccattcatcccccggggggg
cgcaagctttcagatgaggcctccatctgtggccacagtcttcaaagacccagcctttct
gatggtcatttcccatcggcagcagtcatttcccaaaaacgaccctcacttggagctccg
cctctctcgccacaggcaccagtgatgacactttcacaggatccagaaaggctatctccc
acaggtcaaaaggtgttaccaccaatatttggctatcgcctggctcagcagcagctaaaa
gagatgaagaagcagggcttaaaggaggccacccagctgtaccatgtctcctcaagccca
gtccatgacactgtggtagagacatgtgcctcacccaccacctcccccgttccatcccct
actggatttgtttgttctgctctacctgtgggtacgcaggacactgctaacagcagccat
gttggcacatctactcctctgtctgaggcttcacgttccagagttgagtttgtttcagga
ccttctgactcggggaggagctctagatggcgagaccgcacagctgactgggtggagatg
gtagagaggagtaagatggccggtcttaggggaggagatacagtatcggggaatagttac
aacaggaatccaaacttcagacggacctccagctttaatgacaccaaactcctttcaact
tcctcagctcaatccatgcattttagagaaaggagcatgacccaggtgggatctcggact
cttccagaaggaagttcttggaccaaagggaaatgggagagacagcctcacccctcttac
cccatccctgagcacagagtctcagattggagtacaacaaaaccccaaattcacagccag
aggaggacttctcaaaatactcaagtcaaacacatgggaacaaacacaaaaacctcatta
tctgataaacatgttaaagacttcagtggcacaggggaaagaaagacgcgtgtcgactct
ggaggcagaggtggagatttggtctcagggatcggaggtccatccctcacactctcctgg
tctcgtgaggtgaatcagctggatgtagagcgagctgagcgggctgagcagaactggaat
cggcgaggcccgtcacctatccagagaaacatcctggccaggaaactgaaagaagctcag
ctgtgctctggaggcaaaggacgccagcgcagctccagctttaacatgtcttcctctgag
tgtaggagggattggtgccaatcactgccaatatctagagaccagagcagcagtggtggc
tccccctacaggctgagtgaggcagaacagaggatgctggacttggatctatccccagtg
tttgtacagaaggagtag
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