Cyprinodon variegatus (sheepshead minnow): 107087924
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Entry
107087924 CDS
T06110
Name
(RefSeq) protocadherin-16-like
KO
K16507
protocadherin-16/23
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cvg04515
]
107087924
Cell adhesion molecules [BR:
cvg04515
]
Cadherins
Cadherin related
107087924
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
RET_CLD1
Cadherin_4
Fibulin_C
TMEM154
CADH_Y-type_LIR
FctA
RIFIN
Motif
Other DBs
NCBI-GeneID:
107087924
NCBI-ProteinID:
XP_015235254
Ensembl:
ENSCVAG00000019171
LinkDB
All DBs
Position
Unknown
AA seq
3296 aa
AA seq
DB search
MPITSKGARRRAWIGRYSLLSNTCQQKLLFYVFTVLVQSTFVLGVLELQLDEGQPAGTIV
GDISAGLPPGETATLYFISDHEGTGVGSDLNIDETTGIITTARRLDREERDHYSFIAVTM
TGTTIQVSITVNDINDHAPVFPKAKAVLKIPEHTAVGTRFSLDPATDADKDQLTTQGYTI
REGNVGQTFKLETRKGANKLLYLDLVVNGLLDREKRSSYTLVIEAFDGGSPRRIGSMTLE
VTVTDINDHAPVFNQSRYHAIISESLPQGSSILQVFAIDEDEGDNGLVLYEINRRQSDSE
RYFVIDLKSGVITLNRPLDFEVKRVHELVVQAKDNASQPEVTNTFVTIHVRDFNDNQPTM
TIIFLSEDGSPRISEGAQPGQYVARISVTDPDYGEYANVNVSLEGGDGKFALTTKDSIIY
LIYVDQVLDREERDFYHLRVMATDSGTPPLRAESSFTIQVTDVNDNPPQFDQQTYRQTIP
EVVYPGTFVLQVTARDKDQGQNGDVRYSLLKAENSRSDWFSIDPVTGIITTATALDFESE
PAPSVTVVAMDGGRPPLSATVKVDIVLQDVNDNAPVFAKSFYNASIKENTPAGTCFLEVS
ATDGDRGSFGTITYTLGSSSGGTVPFTINKETGQLCTSATLDRDEGLEKFELAVTATDGG
GLSSVTHVRVTVVDINDNRPTFYPVLYTVSLSTHSAPGTSVLKVTANDPDAGENGRVTYR
TAPGGGSTFFTLNKDTGVISLSRSLHGKANTIISMEISAEDGSGLKAPVNARVNVSVVGG
SVASPIFEQAQYFFTVSEDVLRGTAVGVVHAATKTGVSKGILYSISSGDPDGYFTVDSTS
GTIRTALPLDHETCSSLNLDIQARFGSPPAYATSRVRITISDVNDNAPAFLPSSSESLLL
PEITKMGSVIYRIQATDKDSGHNGHLSFDLISAGAAGSSGQRTFGVDRGSGEVRLIGSLS
YESVPRYDLQVVAKDGGAPQLSSTFTLVVHIQAQDAQGPTFDTLTYRVELRENTPLNTRF
LQVRALNRESSGNTGSTPSSSSYISYRLRPDGDAAGFGIMPDTGWLFVRSSLDREVKDMY
LLTVLATSGPGGAGRTGSATVRVSVTDENDNSPRLSQERVFLAVRENLMAGSGFGRVSAT
DRDAGLNARLTYKLLHSDRHFQINSQTGEISTRLALDREQQSSYQLIVVVQDGGTPPRST
TGTAHITVLDENDNAPNFTHARPERELLLQVPEGLPSGTVVGTLSAKDADEGENGTLHYS
LSGPRAERFSLNPTSGELRTASPLRWAERAEYRYTVTATDHGTPGLSSTCQIRIQVLSNA
RSSPTPNVKSMTLNTVEGTAPGSIIGTLRPPGHQDSAVQDGQVTYLVVGGTDRDGTFMVD
RLEGHVYLVRELDYEKGSRYTLHVEVTDFSQAFPSSHLVKLDINVKDSNDHAPEFSEDPV
TIVISENTEPGASIHTFQAVDRDGSGPNSELRYSIEHCWPDTPDLLVLDPLSGVLTLGQK
LDRESTASLYLVVRATDQAVDPSQKGSVTARLYVTDENDNAPTFSSPSAVSVMEDQPVGF
VILYVVAQDKDEGENGRVSYRIQAGNNAGRFTLNPNTGSLSILKVLDREEQEAFNLTIIA
EDHGVPPLSTSQLLCVQVIDVNDESPVFQQPEFNAQVMENQGPGTTVFTVTATDRDQGSN
GQITYGGVTEEGFVINPSTGVITTTKELDTEVQDHYTLTVYARDGGLPPNFAKAVVRVEI
QDMNDNGPIFAKSSYELEVPENQGPVELCFIKATDPDSGPGGELEYRITEGDPDGALQLH
PNTGALSTSRGLDRETKANYNLKVVATDHGSPPLSATVTVNLKVLDVNDNSPVFKRNSYN
VEVSEDAAKGFQVLQVSATDADDDLNGKVLYFLSHEAHGAFAVDEERGVITTSAPLDREK
TASYSFQVFAVDLSPAAPKNSSAQVTVTILDVNDNAPFFIQDPLIIEVSSRRSQRVLATM
KAEDKDFGANGSVFYRFATSVRGFSINSLTGEIQATEPLRDLTQAQRTLIVEAMDQGSPA
QSAQGVVVIYVKEVEYNGIRFSRNARDVSLQENAEKGTAVAQAQAQYPDGTRKGISYSLF
SGNRKQAFSISSSTGEIWVQSSQGLDFEDSPRLRLVVKAETVSSTSFMAINLVLQDVNDN
QPRFQLQNYVAYMKEAQGYEMPIIQVLAEDVDQGQNGQVTYSIQSSSMSGLFKIDPVTGS
ITTAAIMDREIFTTTKLVVTATDRGSPRLAGLATLTVIIVDQNDNSPTIPLPQEVRIPEN
TLIGTEITLVTGNDVDSSPALSYSLQLDPTSLGKFGIHRYSGGVSLTAPLDFEEKTWYTL
TVRATDSQHQTEANITILVEDINDNAPVFTHDLYQITLPEHTPPGSAVITVTATDRDSGD
NGRITYRVMSSTQEGFYINPGNGTLFINHQAEFDPERPAVNIVIEARDGGSPSLSALTTV
QVQISDVNDNAPVFHQSEYRATVAEDTVPGLTILTFEAFDSDLSRENCGFDFAIASGNEG
NAFQIESSVRFLEGRGFQTVGTLLLAERLDFETKSLYNLTVVVSDRGVPQRSSSVAAVIT
IADVNDNPPVFTRAEYTVSLSEGATSGTEIIRLTATDPDSTPNAEVQYSISSGNEVNLFS
IDQWTGALKLEQTLDREQQSTHVFIIQATDGHGHFALAPVIVEVKDVNDNHPFFPVEFLT
ASIRENQPVNSAVTVLHAIDHDTGVFGQLKYFMVERSGKGRDNFVVDQNSGEVRSKNIFD
YEKVNSFSFQALAVDSGNHSATVTVQVFVTGEDEYDPLFTSTQFSFEVPEGAKKGQSIGQ
VQAQDEDGGVDGVVLYSLTSNSPYFDINKTTGVVFLKTDSSSSSSGSGQAKQETRVMTLD
VKAHSPLDTSRSTTAEITIDVTNTNFGLAADVNILLIIIIAVSLGIIILLVVLAVVIFFV
KSHRRKKDQDAANRTLASGTALQKLDECTPGPGGDSIYHQTLPGYAADQGGAGGGPYPRG
GSLDPSHSSGRGSAEAAEDDEIRMINEYPRVASITSSMQEHISARGPDSGIQQDADQLSD
ISCEPAALEGSSWFKGKKLGGSLSGTLLSGQLPVYRDEGGGYLGVGRGLNISLPKDYAFP
EDGKPSVDGSLTAIVASDEELRGSYNWDYLLNWCPQFQPLANVFTEIARLKDETAQQSQN
PRQPFQPKPKIDPKPRIDPPPLITSVAHPGAMTVPPKVPVIGRTFPHLSSLRRSPISHEG
SISSAAMSPSFSPSLSPLAARSPAVSPFGVNQGPSASMISTREPSLEQSPDHEMRI
NT seq
9891 nt
NT seq
+upstream
nt +downstream
nt
atgcctataacaagtaaaggagctagacgaagggcttggattggcagatactctctcctt
tcaaacacctgccaacagaaactcctcttttatgttttcactgtcttagttcagtcaacc
tttgttttgggagttctagaactccagctggatgaaggtcagccagcagggactattgtt
ggtgacatcagtgcaggactaccacctggtgaaacagctaccctttacttcatttctgac
cacgagggcacaggcgttggaagtgaccttaacattgatgagaccactggcatcattacc
acagcacgccgcctggaccgggaggaaagggaccactatagcttcattgcagtgacaatg
actggcaccactattcaggtgtcgatcaccgttaatgacataaatgatcatgcacctgtg
tttcccaaagcaaaagctgttctgaagatcccagagcacaccgctgtgggaacaaggttt
tccctggatcctgccactgatgctgacaaggaccagctgactacccaaggctataccatt
cgagagggcaacgttggacagacatttaagcttgagacaaggaagggtgctaacaagtta
ctttatttagacttggtggtcaacggactactggacagagagaagcgctcgtcatacacc
ctggtgatagaggcatttgatggaggctcaccaagaaggataggatctatgactctagaa
gtgacagtaacagacatcaatgaccatgcaccagtctttaatcagagcagataccatgct
atcatttccgaaagcctccctcaaggaagtagcattttacaggtgtttgcaattgatgaa
gatgaaggcgacaatggtctggtcctttatgaaatcaaccgccgtcagagtgattctgag
cgttactttgtcattgatctaaagtcaggtgtcatcactctcaatagacctctggacttt
gaggtaaagagagtccatgaactggtggtccaggccaaagataatgctagccaacctgag
gtcactaatacatttgtgacaattcatgtccgtgacttcaatgacaaccagccaaccatg
accatcatcttcctcagtgaggacggctcaccgagaatctcagaaggggcccaaccaggc
cagtatgttgctcggatatctgttactgacccagactacggggagtatgctaatgtgaac
gtatccctagaggggggtgatgggaaatttgcgctaacaaccaaagacagcataatttac
ctgatatacgtggaccaggttttggacagagaagagcgggatttctaccatctcagggtg
atggccacagactcaggcacacctcccctcagagctgaatcctctttcacgatccaggtg
acagatgtcaatgacaaccctccacaatttgaccagcagacctacagacaaaccattcct
gaggtcgtctacccaggaacgtttgttcttcaggttacagccagggacaaggaccaaggc
caaaatggggatgtgcggtacagcctgctaaaggctgaaaattctcgctctgattggttt
tcaattgatccagttacggggataatcaccactgcaacagctcttgactttgaatcagag
ccagcgcccagtgtaactgttgttgcaatggacggtggtcggccgcctctgtctgctaca
gtgaaggtagatattgtgcttcaggatgtcaatgataatgcgccagtgtttgccaagagt
ttctacaatgcctccatcaaggagaataccccagctggcacctgcttcttagaggtttcc
gccacagatggagaccgaggttcttttgggaccattacctacaccctgggctcaagctct
ggaggcactgttccctttaccattaacaaggagacgggtcagctatgtaccagtgcaact
ctcgacagggatgagggattagagaagtttgaactggctgtaacagcaacagatggaggt
ggtttaagttctgtaactcatgtgagagtcacggtggtggacattaatgacaaccggccc
accttctatccagtcctgtacacggtcagtctcagcactcacagcgcccctggtacctct
gtgctgaaggtaacagccaacgaccccgatgctggagaaaacggcagagtgacctaccgc
acagcacctggagggggctccactttcttcaccctcaacaaagacacaggtgtgatttct
ttgtcccgttcccttcatggcaaagccaacaccattatttccatggagatttcagctgag
gatggtagcggcctgaaggcaccagtaaatgccagagtgaacgtgagcgtggttggaggc
tctgttgcgtcccctatttttgaacaagcacagtatttcttcactgtgtcagaggatgtt
ctcagggggacagcggtgggagtggtccatgctgcaacaaaaacaggtgtttctaaaggc
atcttatactccatttcttccggagaccctgatggctacttcacagtggacagcacctct
ggcaccattcgaacagctctgcctcttgaccatgaaacctgctccagtctgaacctagat
atccaggcacgctttggttctcccccagcctatgcaaccagccgtgttcgtataactatt
tcagatgtcaatgacaacgcccccgcattccttccctcttcatctgagtccctcctgttg
cctgaaataaccaaaatgggctcagtaatataccgaatccaggccacagacaaagactct
ggtcacaatggacatctgagctttgacctcatctctgcgggggctgcgggcagcagcggc
caaaggacatttggcgtagaccgtggtagtggggaggtacgactgattggaagtctttct
tatgagtctgttccacgctatgatcttcaggtggtggcgaaggatggtggagcgccgcag
cttagttccacttttactcttgtggtccatatccaagcacaggatgcacaaggccccacc
tttgacaccctcacctacagagtggagctccgggagaacacgcctctcaacacacgtttc
ctgcaggttcgagcactcaacagagagtcatcagggaatactggaagcaccccgtcttcg
tcctcctatatttcctaccgtctgaggcctgatggtgatgcagctggatttggcatcatg
ccagacactggatggctgtttgttcgtagttctctggacagagaggtcaaagatatgtac
ctgttgacagtcttggctacatcaggcccaggcggagcgggcaggaccggcagtgccact
gtcagggtgtctgtaacggatgagaatgataattccccgaggctgagccaggagagggtg
ttccttgctgtcagagagaacttaatggcagggtccggctttgggagagtttctgcaaca
gacagagatgcaggactaaatgctcgactcacatacaaacttctccactcagacagacac
tttcagatcaactcacaaacaggggagatcagcacccgcctcgctctggacagagagcag
cagtcaagctatcagcttatcgtggtggtgcaggatgggggcactcctccgcgcagcacc
acaggcactgctcacatcaccgtactggatgaaaatgacaacgcccccaatttcactcat
gccaggcctgaaagagagctgctgcttcaggtgccagagggtctaccatcagggactgtg
gtaggaactctgtcagctaaagatgctgatgagggggagaacggtacactgcactactct
ttatcaggtcccagagcagagcgtttctccttgaaccccaccagtggcgagctgagaact
gcttcccctctacgttgggctgagcgagctgagtacagatatacagtgaccgccactgac
cacggcactccaggcctcagctcaacctgccaaatccgaatacaagttctcagcaacgcc
aggtcatccccaacacccaatgtcaaatctatgaccctgaacactgttgaaggcactgct
cccggctccattatcggcacgttacgcccacctggccatcaggattctgctgtgcaggat
ggccaggtgacctacctggtagtgggagggaccgaccgggacgggactttcatggtggac
cgtctggagggccatgtgtacctggtgcgcgagctggactatgagaagggctccagatac
actctgcacgtcgaggtgacagatttctctcaagcatttccaagcagccacctggtcaag
ctggacatcaatgtgaaggatagcaatgaccatgcccctgagttttcagaggacccagtg
actattgtgatctcagaaaacacagagccgggggcttcaatacacactttccaggctgtg
gatagggatggaagtggaccaaacagtgagctacgttactctattgagcattgctggcct
gacacccctgacctcctggtccttgacccactaagcggggtccttactttggggcagaag
ttagaccgtgagtctacggcctccctctaccttgtggtacgagccactgaccaagcagta
gatccctctcagaagggctcagtcacagctcggctgtatgtgacggatgaaaatgacaac
gctccaacatttagctctccgtctgctgtcagtgtcatggaggatcagcctgtagggttt
gtgattttgtacgtggtagcacaggataaagatgaaggagagaatggcagagtatcctac
agaatccaagcaggcaacaatgctggtcgcttcactcttaatcctaatacaggctctctc
tccatccttaaagtcttggaccgggaagagcaggaggcctttaacctaacaatcatagca
gaggatcatggagtaccaccgctctccacctcccagctgttgtgtgtgcaggtgatagac
gtcaacgacgaatctccagtgtttcagcagccagagttcaacgcccaagtgatggaaaat
caaggaccaggaaccacagtgttcactgtaacagccacagatcgtgatcaaggttctaat
ggtcaaataacatatggaggtgtgacagaggagggttttgtgatcaatccttcaactgga
gtcatcaccaccacaaaagaacttgacacagaagttcaggatcattacacacttactgtg
tatgccagagatggagggctgcctccgaattttgccaaggccgtggtccgtgtggagata
caagacatgaacgataacggccccatctttgcgaagtcatcttatgaactcgaagtgcca
gaaaaccagggccctgtggaactttgctttatcaaggccacagatccagactcgggtccc
ggtggagaactggagtacagaatcactgagggggaccctgatggagctttgcaactccac
cccaacacaggggccctctccacgtcacgtggacttgacagagagacaaaagcaaactat
aacttgaaggtggtggccacagatcacgggagcccccctcttagtgctactgtcacagtt
aaccttaaagtgttagacgtcaatgacaacagccctgtttttaaaagaaacagctacaac
gtggaagtctctgaggatgctgctaagggttttcaagttcttcaggtgtcagcaacagat
gctgatgatgaccttaatgggaaggtcctgtattttctcagccatgaagcacatggagcc
ttcgctgttgatgaggagagaggtgttatcaccacctcagcgcctcttgaccgggaaaaa
actgcatcttacagcttccaggtgtttgctgttgacctttcccctgctgctcccaaaaat
tcttctgctcaggtgaccgtaacaatacttgacgtcaacgataacgcccccttcttcata
caagaccctttgatcatcgaagtgtccagcaggcgttcacagcgcgttttagccaccatg
aaggctgaggataaagattttggtgccaacggttccgtgttttatcgctttgccacatct
gtgaggggcttcagcatcaactcgctcacaggggagatccaggccaccgagccgctaagg
gacctgacccaggctcagaggaccttgatagtggaagccatggatcaaggcagcccggcc
cagtctgcacagggggtagtggtgatttatgtaaaggaagtagaatacaacggcattcga
ttctcaaggaatgctcgagatgtcagcttacaggaaaatgctgaaaaaggcacagcagtg
gctcaggctcaggcccagtatccagatggcacacggaaggggatcagctatagtctcttt
agtggaaacagaaagcaggctttcagtatcagctcctcaacaggtgaaatctgggtgcag
agctcccaaggactagactttgaggacagtccccgactccgtcttgtagtgaaagctgaa
acggtgtcatccacttcgttcatggccattaatttggtccttcaggatgtcaatgacaac
cagcctcgcttccagctgcagaactatgttgcttacatgaaagaagcacaaggatatgaa
atgccaattatacaggtgctggctgaagacgtggaccaaggccaaaatggtcaggtgaca
tactccatccagtcctcaagcatgagtggcctgtttaagattgatccagtgacaggaagc
atcaccacagctgccatcatggacagggagatctttacaacaaccaagctagtagttact
gcgacagatagaggaagtccacgactggccggtttagccacgctaacagtgataattgtt
gaccaaaatgacaacagtcccactattccgttaccccaggaggttcgcatcccagaaaat
acgctaatcggcacggagatcactcttgtgacaggcaacgatgtggactccagtcctgcg
ctctcttactccttgcagcttgaccctacatccttaggcaaatttgggatccatcgttac
agtggaggcgtgtcactgacggcccctctggactttgaagagaagacatggtacaccctg
acagtcagagccacagacagccagcaccaaactgaggccaacattacaatattggtggaa
gatattaacgacaatgcacctgtattcacccatgatctctatcagattaccctacctgag
cacacgccacctggaagtgcagttatcacagtaacagcaactgacagggactctggagat
aatgggaggatcacctacagagtgatgtcatccactcaggagggtttctatataaacccc
ggcaacggaaccttgtttatcaatcaccaagccgagtttgaccctgaacgtccagccgtt
aacattgtcattgaagctcgagacggaggctcgccttcactctccgctctcactacagtc
caggttcagatttctgacgtcaacgacaacgctccagtgtttcaccagtcagagtatagg
gctacagtggctgaagacaccgttccagggttaaccattcttacctttgaggcctttgac
agtgacctgtcacgagaaaactgtggctttgactttgccattgcgagtggaaatgaagga
aatgcgtttcagattgagagcagtgtacgtttcctagaaggacggggctttcaaacagta
ggaactctgttactggctgagaggcttgactttgaaaccaagtcgctttataacctcact
gtggtggtgtcagaccgaggtgtcccacaaaggagctccagtgtcgctgcagtcataaca
attgccgatgttaacgataaccccccagtgttcactagagcagaatatactgtgtctctc
agtgagggagccacctcggggactgagatcataagactgactgcaacagacccagactca
actccaaatgctgaagtccaatattccatcagctctggaaatgaggtgaacttattttcc
attgatcaatggacgggagctctaaagcttgagcaaacacttgaccgggagcaacagtca
actcacgtctttatcattcaagccacagatggtcatggtcattttgctctagctccagtc
attgttgaagtaaaggatgtaaacgacaaccatccattctttccagtggagttcctgaca
gccagtatacgggaaaaccaaccggtaaactcagctgtgactgtcctccatgccatagac
catgacactggtgtttttggccaactgaagtattttatggtcgaaaggtctggaaaagga
agagacaactttgttgtcgaccagaattcaggagaagtcagaagtaaaaatatatttgac
tatgagaaagtaaactcgtttagtttccaagcattagctgtggattcaggcaaccattca
gccactgtaaccgtacaggtgtttgttacaggtgaggacgagtatgacccactatttact
tccacacagttttcatttgaagtgccagagggagcaaagaaaggtcaaagcattggtcag
gttcaagcacaggatgaagatggaggagtggatggtgtggttctctattccctgacttcc
aactctccatatttcgatataaataaaactacaggggtggtttttctcaagacagacagt
tccagcagcagcagtggatcaggccaggctaaacaggaaaccagggtaatgaccctggat
gtgaaggctcacagtccacttgatacatcacgctctactacagccgagatcaccattgat
gtcactaacaccaacttcggcttggctgctgatgttaacatactgcttattatcatcatt
gctgtgtctctgggaattatcatattgcttgtagttttggctgtggtgattttctttgtc
aaatcacacagaaggaaaaaggatcaagatgcagcaaacaggactcttgcatcaggaact
gccttacagaaactggatgaatgcactccaggaccaggaggtgacagtatctaccaccaa
actctgccaggttatgctgctgatcaaggaggagccgggggtggtccctaccctagaggg
ggctctttggatccctctcactccagtggtagaggatcggctgaggcagcagaggatgat
gagatccggatgattaacgagtaccctcgtgttgcctcaattacctcatctatgcaggaa
cacatatctgccagaggacctgattctggaattcagcaagatgccgaccagctttctgac
atttcctgtgaacctgctgctttggagggcagcagctggttcaaagggaagaagttagga
ggcagtctgagtgggaccttgctttctggtcagctccctgtttacagggatgaaggaggt
ggctacctaggagtaggtcgtggtctgaacatttctctcccaaaggattatgctttccct
gaggacggtaaaccttcggtggacggttctcttactgctattgtcgcaagtgatgaggag
cttcgtggaagttataattgggattacctactcaattggtgccctcagtttcaacctctt
gccaatgttttcacagagattgctcggctaaaagatgaaaccgcacagcaaagtcagaac
cctcgacagccctttcaacccaagcccaaaatagatcccaaacctagaattgacccacca
cctcttattacatcagtggctcacccaggggctatgacagtacctccaaaagtccctgtt
attgggcgaacattcccccacttgtcctctctacgaaggtcccccattagccatgaagga
tcaatttcctctgcagcaatgtcgccaagcttctctccttctctgtcccctttggctgct
cggtcaccagctgtttctccatttggtgtaaaccaaggcccctctgcatcaatgatcagc
accagagagccctcacttgagcaaagtccagatcatgagatgagaatatga
DBGET
integrated database retrieval system
