Cyprinodon variegatus (sheepshead minnow): 107088042
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Entry
107088042 CDS
T06110
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107088042 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107088042 (bard1)
04121 Ubiquitin system [BR:
cvg04121
]
107088042 (bard1)
03036 Chromosome and associated proteins [BR:
cvg03036
]
107088042 (bard1)
03400 DNA repair and recombination proteins [BR:
cvg03400
]
107088042 (bard1)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
107088042 (bard1)
Ubiquitin system [BR:
cvg04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
107088042 (bard1)
Chromosome and associated proteins [BR:
cvg03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
107088042 (bard1)
DNA repair and recombination proteins [BR:
cvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
107088042 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank
Ank_2
zf-RING_6
Ank_5
Ank_4
Ank_3
BRCT
BRCT_2
Ank_KRIT1
zf-RING_5
zf-RING_10
PTCB-BRCT
zf-C3HC4_3
Prok-RING_4
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
107088042
NCBI-ProteinID:
XP_015235451
Ensembl:
ENSCVAG00000016147
UniProt:
A0A3Q2D5K7
LinkDB
All DBs
Position
Unknown
AA seq
815 aa
AA seq
DB search
MHDLSKLDKESKSSREISLVKMDNNAPLEEDSWKRTKEAVASFRQLLLCSKCSNLMEEPV
CLGICEHMLCRSCAGPRAGDGCAVCRSPAWVKDIQINRQLSSIIQLFSGLDSLLNPTELP
AESSCVEVKSQAEAVVLKQKKNFKIWFSPRSRKVRCKVEKPLEVPIPDNSSSGEQPAAQC
QDLSVFNFASSSQDSSSSQSENNVNRKGRKRSKKVATKKQVQGRTSTTRKQNKESMKRKR
LETINQQWGITEDQNPSSGLEPFCADGARRSSKRVSFLSPTVATDKPHPEVSQIDELSLT
NHTMKEGFSGGGVNVFSNQSQHELSISSEMVSTNDPNPNNNSSKNKSISPQENPSKRNKT
EEVNRTLDTTPKRPRASPGQRRKTPDRPSLPFTECLTLTSPMRERSKKHLRADEQRSPSV
VALRSAESHNKSLCSPRSSGSRSSPGSPAVMKRNHKGETPLHLAAIKGDVDSVEELLDQG
ADPNLKDNAGWTPLHEACNLGHLAAVEVLVSRGALLNTPGYENDSPLHDAVRNGHAAIVK
LLLQLGASQNVLNLHGKRPADYAVSQEMLQIFQEAAEETQDAKSHTSQSPSATVSVSNES
IRRDQTLLLLASKLSQPEQHQLASLGVLLGGRIADTFSSSVSHVVVPEGQMPTTYSTLLG
LLAGCWVVKYSWVEACLQAGKWLPEAEHEAGEGSRRSRINRCSLLPPLFDGCFFFLHGSF
KGLTKDELAKLLREGGGHLLSRQPKPDSDVTQTLNAAAYHAEPGSDQALCTQYIIYDPQG
NYKPAVVRRGKVWSAPSTWIIDCISSFSLLPVPQP
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgcacgatttaagcaaactagataaagaaagcaaatcttccagggaaatatctcttgtg
aagatggataacaacgcaccgctagaggaagacagctggaagaggactaaagaggcggtg
gcaagcttccgtcaactgctgctttgctccaaatgctcaaatttgatggaggagccggtc
tgtctggggatatgtgagcatatgctgtgcaggtcttgtgctggcccccgggcaggagat
ggctgcgctgtgtgtcgcagccctgcgtgggtgaaggacatccaaatcaacaggcagctt
agcagcatcatacagctgtttagtggcttggactccctgcttaatcccactgaacttcca
gcagaatcatcttgtgttgaggtcaaatcacaggctgaggctgttgtcctaaagcagaaa
aagaactttaagatctggttcagtccccgcagtcgaaaggtgcgctgtaaggtagagaag
cctttagaggtcccgatcccagacaatagctcctccggagagcagcctgcagctcagtgc
caggacctttctgtgtttaattttgcttcatcctcccaagactcttcatcttcacaaagt
gaaaataatgtaaacagaaaaggaaggaagagatccaagaaagttgctactaaaaagcag
gttcaaggtcgcacgagtaccacacgtaaacagaacaaagagagcatgaaaaggaagagg
ctggagaccattaaccagcaatggggaattacagaggatcaaaatccctcatctggactg
gagccattttgtgctgatggagcaagaaggtccagtaaaagggtttctttcttaagccct
actgttgccactgacaagcctcatcccgaagtatcgcagattgatgaactcagtttgacc
aaccatacgatgaaagagggtttctcaggaggaggggtgaatgtgttcagtaaccaaagc
cagcatgagctgagcatatccagtgagatggtgtccacaaatgaccccaatccgaataac
aattcttctaaaaacaaaagcatctctccccaagagaacccctccaaaagaaacaaaact
gaggaggtaaaccggaccttggataccacaccaaaacgaccgagggcttctccagggcaa
aggaggaaaacaccagatagaccatctttgcctttcacagagtgtttaactttaacaagc
cccatgagggaaaggagcaagaaacacctgagagcagatgagcagcgtagtccctctgtg
gtagcacttagatctgcagaaagccacaacaaatccttatgcagtcctcgatcatctggc
agccgttcaagtcctggaagtcctgcagtaatgaagaggaaccacaagggagagacccct
ctgcatcttgcagccataaagggagatgtagattctgtcgaagaactgttggaccaggga
gcagaccccaacctgaaagataatgctggctggacgcctttgcatgaggcgtgtaatctg
ggccacctggcagctgtggaggttttggtctctagaggagccctgttgaacacccctggc
tatgaaaatgattctccactccatgatgctgtgaggaacggacatgcagccattgttaag
ctgctgctgcagcttggtgcctcgcagaatgttcttaatctgcatggaaagcggcctgca
gattatgcagtgagccaggagatgctgcagattttccaggaagctgcagaagaaacccaa
gatgctaaatcacatacatctcaaagcccatcagccactgtctctgtgtcgaatgagagt
ataagaagggatcagaccttactgctattggccagcaagttgtcgcaaccagagcaacat
cagctggccagcctgggagtcctactgggaggaaggatcgctgataccttctctagctca
gtgagccatgtcgttgtgccagaaggacaaatgcccaccacctactcaaccctcctgggt
cttcttgccggctgctgggttgtcaaatacagctgggtggaagcatgtctgcaggcgggg
aagtggctgcctgaagcagagcacgaagcaggagaaggctctcgtcgcagtcgcatcaat
agatgtagtttgctccccccactcttcgacggctgtttcttcttcctccacggctccttc
aaggggctgaccaaagatgagctggccaagttgttgcgtgaaggaggcggacaccttctg
agccggcagccgaagccagacagtgacgtgacacagacactaaatgcagcagcctaccat
gccgagccaggctctgaccaggccctttgcacccagtacatcatctacgacccacaggga
aactacaagccagcagttgtcaggcgagggaaggtgtggtcggctccttctacttggatc
atcgactgcatctcatccttcagccttctccctgtacctcagccttaa
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integrated database retrieval system
