Cyprinodon variegatus (sheepshead minnow): 107088131
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Entry
107088131 CDS
T06110
Name
(RefSeq) neurobeachin-like isoform X1
KO
K24183
neurobeachin
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvg04131
]
107088131
Membrane trafficking [BR:
cvg04131
]
Protein recycling
Rab GTPases and associated proteins
Rab4 associated proteins
107088131
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
Beta-prop_IFT122_1st
Laminin_G_3
WD40
Neurobeachin
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WDR55
Beta-prop_WDR3_2nd
Beta-prop_WDR75_1st
WD40_WDHD1_1st
Beta-prop_EML
DUF4800
Beta-prop_WDR90_POC16_2nd
Motif
Other DBs
NCBI-GeneID:
107088131
NCBI-ProteinID:
XP_015235565
LinkDB
All DBs
Position
Unknown
AA seq
3067 aa
AA seq
DB search
MSSEKPVSAPPGSADTDQDSQPPLPLPPAGSSAQPPPQQQQQVAAGAGSGSSGEKMVSAA
GSMVLPAGVINPAVPIRNIQMKFAVLVGLIQVGEVSNRDIVETVLNLLVGGEFDLEMNFI
IQEAESIGCMVELLSHCEVTCQAEIWSMFTAILRKSVRNLQTSTEVGLIQQVLLKMSTVD
DMIADLLVDMLGVLASYSITVKELKLLFSMLRGENGIWPRHAIKLLSVLNQMPQRHGPDT
FFNFPGRSAAAIALPPIAKWPYQNGFTINTWFRQDPLNNINVDKDKPYLYCFRTSKGIGY
SAHFVGNCLIVTSLKSKGKGFQHCVKYDFQPRKWYMISIVHIYNRWRNSEIRCYVNGQLV
SYGDMAWHVNTNDSYDKCFLGSSETADANRVFCGQLGAIYVFSEALNPAQIFAIHQLGPG
YKSTFKFKSESDIHLAEHHKQVLYDGKLASSISFTYNAKATDAQLCLESSPRENPSIFVH
SPHALMLQDVKAIVTHSIHSAIHSIGGIQVLFPLFAQLDYKQLNDSSVDTTVCATLLAFL
VELLKSSVAMQEQMLGGKGFLVIGYLLEKSSRIHITRAVLEQFLSFAKYLDGLPHGAPLL
KQLCDHVLFNAAIWIHTPAKVQLSLYTYLSSEFIGTATIYTTIRRVGTVLQLMHTLKYYY
WAINPLECSGITPKGLDGPRPSQKEIISLRAFMLLFLKQLILKDRGVKEDELQSILNYLL
TMHEDENIHDVLQLLVALMSEHPASMIPAFDQRNGIRVICKLLASKSESIRVQALKVLGY
FLKHLGHKRKVEIMHTHSLFTLLGERLMMHTNTVSITTYNTLYEILTEQVCTQVVHKPHP
EPDSTVKIQNPMILKVVATLLKNSSPSAELMEVRRLFLSDMIKLFSNSRENRRCLLQCSV
WQDWMFSLGYINPKNPDEQKITEMVYNIFRILLYHAIKYEWGGWRVWVDTLSIAHSKVTY
EAHKEYLAKMYEEYQRQEEENMKKGKKGSVSTISGLSATPAPVVNGNLEIDDNSQTQTPE
SEAEYGEGAGGDSRNLLAEGSVKRPNGEALTPGEQTAGPGVRVEVHDLLVDIKAEKVEAT
EVKLDDLDLSPEGLSGSVSVSGSGGVVGIENGPLVEVDSLLDSSYCSVVPNLNGNLAPKD
ETVGSGVRIGPSLGLSGVNMEDDGNMGPLITLADEKDSVPSNNGFLFSKVDEKLLPALAS
TDPLVLPSPDQPAPSGTVPAHSTTSASDDLSLLAHMTSCDSDLTQTQSHSSGELPEDGPF
KIQSPLADISSIAEAESQNQLQGTTRPEFPEGEGASGPEGETVGLKTGGDTASTTSDTER
SDDGKDKDTKKIQTTATTQALHGRTAAQLERDLRVDLGFRGMPMTEEQRRQFSPGPRTTM
FRIPEFKWSPMHQRLLTDLLFALETDVHVWRSHSTKSVMDFVNSNENIIFVHNTIHLISQ
MVDNIIIACGGILPLLSAATSPSSSKSSANTKAGGAGPQRGSKGEEVTPVPGGGGAGGET
ELENIEATQGMSSETAVTFLSRLMAMVDVLVFASSLNFSEIEAEKNMSSGGLMRQCLRLV
CCVAVRNCLECRQRQRDRSCKSSLTSSKSQDSLHSASTASKQDPDRLLQDVDINRLRAVV
FRDVDDSKQAQFLALAVVYFISVLMVSKYRDILEPQREIGRSTSLSGRSIRHEINSPTST
EHPSSAFTDRDKQTPTPVDDSPLAGLPHTDSGIGEEGHVAGSLNGSEVGLGGLGLGLVGR
ETDRDRDRDNGRGVGGSGGGGTDLLCSLSDVRRSQESLLDSPHEPRSTPNSSQAPPSSIS
SISQTNKGINVKEILKSLVAAPIDGTELGQESGPTPYHPDPALKTHPMLPMQFHSFDRSV
VVPVKKPPPGSLSVNTVGTPTTGGSATPGSTPNIFAAATATPKSMINTTGAADSASSSSS
SSSSFVNGATSKNLPAVQTVAPMPEDTMENMSAYCEVAQCALRSGQTPPELKSFSSLAGF
QAAPRDAGQCFSITTKLERALEKVAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTGLVC
MKSSTSVVELVMLLCSQEWQNSIQKNAGLAFIELINEGRLLCHAMKDHIVRVANEAEFIL
NRQRAEDVHKHAEFESNCAQYAADRREEEKMCDHLISAAKHRDHVTANQLKQKILNILTN
KHGAWGTMSQSQLHDFWRLDYWEDDLRRRRRFVRNAFGSTHADISLKTLEDYGTEEDEEE
GGLKSKKTFRSQSVVTQNPEAELMLEGDDDAVSLLQEKEIDNLAGKTETQKGPVVLSTPA
QLVAPVVVARGTLSITTTEIYFEVDEEDPAFKKMDAKVLAYSEGLHGKWMFSEIRAVFSR
RYLLQNTGLEVFMANRTSVMFNFPDQATVKRVVYSLPRVGVGTSYGLPQARRISLATPRQ
LFKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYDSEELDLTLPG
NFRDLSKPIGALNPKRAAFYAERYETWDDDGTPPHHYTTLYSTAHSTLTWMVRIEPFTTF
FLNANDGKFDHPERAFSGIGRAWRNCQRDTADVKELIPEFYYLPEMFVNSNEYELGVRDD
GVPVSDVELPVWAKKPEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVRALNVF
NFLSYEGAVNLDNLDAAQREVIEAQIQLSGQVPSQLLIEPHPPRSSAMHLCFLPQSPLMF
KDQMQQDVIMVLKFPSNSPVTHVAANTLPHLSIPAAVTVTCSRLFAVNRWHNTVGLRGAP
GYSLEQAHHLPIEMDPLIANNSGVNKRQITDLVDQSIQINTHCFVVTADNRYILVCGFWD
KSFRVYSTETGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRDATLLLWYWSGRHHI
IGDNPNNSDYPAPRAVLTGHDHEVVCVSVCAELGLVISGAKEGPCLVHTITGDLLRALEG
PELCMQPRLISVSSEGHCIIYYERGRFCNFSINGKLLAQMEVNDSSRAILLSSDGQNLVT
GGDNGVVEVWQACDFKQLYIYPGCDAGIRAMDLSHDQRTLITGMASGSIVAFNIDFNRWH
YEHQNRY
NT seq
9204 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcgagaagccggtttcagcaccaccgggctctgcggacacagaccaagactcg
cagcccccgctccctcttcccccggcgggctcctccgctcagcctccgccgcagcagcag
cagcaggtcgccgcgggcgctggctccggctccagcggggagaagatggtgtctgcggcg
ggctctatggttctcccggccggggtgatcaaccccgcggttccgattcggaatatccag
atgaaattcgccgtgctggtgggcctgatccaggtcggggaggttagcaatcgggacatc
gtggagacggtgctgaacctgctggtgggtggtgagtttgacctggagatgaacttcatc
atccaggaggcagagagcatcggctgcatggtggagctgctgtcgcactgcgaggtgacg
tgccaagccgagatctggagcatgttcaccgccatcctgcgtaagagcgtgcgcaacctg
cagaccagcactgaggtgggcctcatccagcaggtgctgctcaaaatgagcactgtggac
gacatgatcgcagacctcctggtggatatgctgggagtcctggctagttacagcatcaca
gtcaaggaactgaagcttctcttcagcatgctgagaggagaaaatggcatctggccaaga
cacgcaatcaagctgttgtcagtgttgaaccagatgcctcagaggcacggccctgacacg
ttcttcaacttccccggacgcagtgcagcggctatagcattgccaccaattgccaagtgg
ccgtaccaaaatggatttactatcaacacctggttcagacaagatccgctcaacaacata
aacgtggacaaagacaaaccgtacctctactgttttcgcacgagtaaagggatcggttac
tctgctcactttgtgggaaactgccttattgtgacatctttgaagtccaaaggaaaaggc
ttccagcactgtgtaaaatacgacttccaaccacgtaagtggtacatgatcagcatcgtc
cacatctataaccgctggagaaactcagagatccgctgctacgtcaacggtcagctggtc
tcctatggcgacatggcatggcatgtcaacaccaatgatagctatgacaagtgttttctg
ggttcatcagagacggcagatgcaaaccgagtcttctgtggtcagcttggagccatttat
gttttcagtgaagctctcaatcctgcacagatatttgccatccatcagcttggtccggga
tacaagagcactttcaagttcaaatctgagagcgacatccacctggctgagcaccacaag
caggtgttgtacgacggcaagctggccagctccatctccttcacctacaacgccaaggcc
acggacgcccagctttgcctggagtcatcgcccagggaaaacccctccatctttgtccac
tcaccgcacgcactcatgctccaggatgtgaaggccattgttactcattccatccacagc
gcaatccactctataggaggcatccaggtcctgtttccgctctttgctcagctggattac
aagcagctcaatgacagcagtgtggacaccacagtctgcgcgaccctactggcgttcctg
gtggagctgttgaaaagctcagtggccatgcaggagcagatgctgggagggaagggcttt
ctggtgattggatacctgctggagaagtcgtctcggattcacatcaccagagcagtcctt
gagcagtttctgtcctttgcaaagtatctggacggtttacctcatggggcgccactcctc
aagcagctctgtgaccatgtcctctttaacgctgccatctggatacacacacccgccaag
gttcagctgtccctctacacttacctgtcgtcagagttcatcggcaccgccaccatttac
accaccattcgccgtgtcggcaccgtcctgcagctgatgcacactctgaagtactactac
tgggctataaaccctctggagtgcagcggaatcacgcccaaagggctcgatggaccgcgg
ccgtcccagaaggagatcatctcgcttagagccttcatgctcctcttcctcaaacaactc
atactgaaggaccggggcgtgaaggaggacgagctgcagagcatcctcaactatttgctg
accatgcatgaggatgaaaatatccacgatgtgctccagctgctggtggctcttatgtct
gagcacccggcatccatgatccctgcttttgaccagagaaatggcatcagggtgatctgc
aaactcctagcctctaagagtgaaagtatacgggttcaggccctcaaggtcctaggctac
ttccttaagcacctcggccacaagaggaaggtggagatcatgcacacgcacagtctgttc
acactgctgggagaaaggctgatgatgcacaccaacaccgtttcaattaccacctacaac
acgctgtatgagattctgactgagcaggtttgcacccaggtggtccataaaccccaccct
gagccagactccactgtcaagatccagaatcccatgattctgaaagtagtggctacattg
ttaaagaactcctcaccaagcgctgaactgatggaagtccgaagactcttcctttccgac
atgattaaactgtttagtaacagccgcgaaaacagacgctgcctgttgcagtgctcagtg
tggcaggactggatgttctctctcggatatatcaatcctaagaacccagatgagcagaag
atcactgaaatggtgtacaacatctttaggatccttctctaccatgccatcaaatacgaa
tgggggggatggagagtgtgggttgataccctctccattgcgcattcaaaggtgacctat
gaagctcataaagagtacctggctaagatgtatgaagagtaccagcgtcaggaggaggaa
aacatgaagaaaggaaagaaaggctccgtctccacaatctctggtctctcagccacgcca
gctcctgtcgtcaacgggaatctggagatagatgacaactctcagacgcaaaccccagag
agcgaagccgagtatggcgaaggggcaggtggggactctcgcaaccttctcgccgagggt
tcagtgaagcgcccgaacggggaagctctgacacctggggagcagactgctggtcctggg
gtgagagtggaggtccatgacctcctggtggacattaaagctgaaaaagtagaagccact
gaggtgaagctggatgatctggacctgtctcctgaggggctaagtgggagtgtgagtgtg
agtggcagtgggggtgtggtaggaatagaaaacggacctcttgtagaggtggattctctc
ctggacagttcttattgctctgttgttccaaaccttaatgggaacctggcaccgaaagac
gagacggtgggctctggggtcagaattggaccaagcttggggctttctggagtcaacatg
gaggatgatgggaacatgggtcctctcatcacgttggctgatgagaaggacagcgttcca
agcaacaatggctttcttttcagcaaggtggatgagaagctgcttccagctctggcatcc
acagatcccctcgtccttccaagtccagaccaacctgctccatcaggcactgtccccgct
cactctaccaccagcgccagcgatgacctcagcctgctggcccacatgaccagctgtgac
tctgatttaacacaaacccaaagccactcctccggggaactccccgaggacggaccgttt
aaaatccagagtcctctagctgacatcagctctatcgccgaagccgagagtcagaaccag
ctccaagggacgaccaggccagaattccctgagggggagggtgcatccgggccagagggg
gagactgtggggctgaagaccgggggagacacggccagtaccacttctgatacagagagg
tcagatgatgggaaagacaaggacacaaagaaaatccaaactacagcaaccacccaggcc
ttgcatggccgtaccgcagcccagctggagcgggatctgcgggttgacctgggtttccgg
ggaatgcccatgacagaagagcagaggcgtcaattcagccccggcccgcgcaccaccatg
ttccgcatcccagaattcaagtggtccccgatgcaccagaggttgctcaccgacctgctc
tttgcactggagacggacgtgcatgtgtggagaagccattccaccaagtcagtgatggat
ttcgttaacagcaatgaaaacatcatctttgtccacaacaccatccacctcatttctcag
atggtggacaacattatcattgcctgtggaggcatccttcctctcctgtcagctgccacc
tccccctccagttctaagagtagtgccaacactaaggcaggaggagccggaccccagagg
ggttcgaagggagaggaggtgacccccgttcctgggggaggaggcgcagggggagagacg
gagttggaaaacatagaagcaacgcagggcatgtcttcagagacagcggtcacttttctg
tctcgcctgatggccatggtggacgttttggtgtttgccagctcgttgaacttcagtgag
atcgaagcagagaagaacatgtcgtctggaggactaatgaggcagtgtcttcgcctcgtt
tgttgtgtagctgtcagaaactgcctggagtgcagacaaagacagagagatcgaagttgc
aagtcttcattaaccagcagcaagtcacaggacagcctccacagtgcctccactgccagc
aagcaggatccagacagactcctgcaggacgtggatatcaaccgtcttcgagcggtggtc
ttcagagatgtggatgacagtaagcaagcgcagtttttggcgcttgcagtcgtatacttc
atctctgttctcatggtgtcaaaataccgagacattttggaaccacagagagagattggc
aggtccaccagcctgtcggggagaagcatccggcacgagataaactctccaaccagtaca
gagcacccatcctcagccttcactgaccgcgacaagcagacccctacccccgtggacgac
tccccactcgccggcctcccccacacagactcaggcatcggagaagaaggacacgtggcc
ggatctctcaacggctcagaggtgggccttggagggctgggtttgggcctggtggggaga
gagacagacagagaccgagacagagacaatggaagaggagtgggaggaagtgggggagga
ggcacagatcttctgtgcagtctgtctgatgtgcgaaggtcgcaggagagccttctggat
tctccccatgagcccagatccactccgaactcgagccaagcccctccttcatccatctct
agcatcagccaaacaaacaaaggcattaatgtgaaggagatcctgaagagcttggtggct
gctcccattgacggcacagaactgggtcaggagtccggaccaacaccgtaccacccagac
cctgccttgaagacccatcctatgctgcccatgcagttccactcctttgacaggagtgtc
gttgttccagtgaaaaagcccccaccaggcagcctgtcagtcaacacggtgggcacaccc
accaccggtggatcggccactcctggcagcacacccaacattttcgctgctgcaacagca
acccctaagagcatgatcaacaccacaggtgctgctgattctgcctcctcgtcctcttcg
tcctcgtcgtcgttcgttaatggcgcaactagtaagaatctgcctgcggtgcagacagtg
gcgccgatgccagaagacaccatggagaacatgagtgcctattgtgaggtggcgcagtgt
gcgctgcgcagcggtcagacgccccctgagctcaagtcttttagctctctggcaggcttc
caggcagccccccgagatgcaggacagtgttttagcatcaccaccaagctggagcgtgct
ctggagaaagtagcaccgctgctgagggagatcttcgtggacttcgctcccttcctgtcc
aggacgctgctgggtagccatgggcaggaactgctcatagaaggtacaggtctggtgtgc
atgaagtccagcacatctgtggtggagctagtaatgctgctctgttctcaggagtggcag
aactccattcagaagaatgcagggctggccttcattgagctcatcaacgagggaagactc
ttgtgccatgccatgaaggatcacatagtgcgagtggccaatgaagcagagttcatcctg
aacagacagcgggccgaggacgtccacaaacacgctgaatttgagtccaactgtgcccag
tacgctgcggaccgcagagaggaggagaaaatgtgcgaccacctcatcagcgccgccaag
cacagagatcatgtgactgccaaccagctgaaacagaagatcctcaacatcctgaccaat
aagcatggagcctgggggacaatgtcacagagccaattacacgacttctggcgtttagat
tactgggaggacgacctcaggaggaggagaagatttgtgagaaatgcctttggatccaca
catgctgacatttcactaaaaactctggaggactacggcacagaggaggacgaggaggag
gggggtctgaagtcgaagaagaccttccgcagtcagtcggtggtcacccagaatccagag
gcggagttgatgctggaaggagacgatgacgccgtcagtctgctgcaggaaaaagagatc
gataacctcgctggtaagacggagacacaaaaaggccccgtggttctgagtactcctgct
cagctggttgctcctgtggtggtggctcggggcactctgtccatcaccaccacagagatc
tactttgaagttgatgaagaggatcctgctttcaagaagatggatgccaaagttctggct
tactcagagggtttgcacgggaaatggatgttcagtgagatccgagctgtgttctccaga
cgttacctgctgcagaatactggcctagaggttttcatggccaacagaacttctgtgatg
tttaactttcccgaccaggccacagtcaaaagggtcgtttacagcctcccacgggtgggg
gtaggaacgagttatggacttccacaagccagacgtatctccttggccaccccacgtcag
ctcttcaagtcctcaaacatgacgcagcgctggcaaaggagagagatctccaactttgag
tacctcatgtttctaaatactattgcagggaggacctataatgatttgaaccagtacccc
gtcttcccttgggtcctgaccaactacgattcagaggagcttgatctcactctgcctgga
aacttcagagacctttccaagccaatcggtgctttgaatcccaaacgagctgcattttac
gcagagcgctacgagacgtgggatgatgacggcacgcctcctcaccactacacaacgtta
tactccacagctcactccacactcacatggatggtcagaatagaaccctttactacattt
ttccttaatgccaatgatggtaaatttgaccatccagagagagcgttctctggtatcggc
cgtgcgtggaggaactgccagagggacaccgcggatgttaaggagctgatcccagagttt
tactacttgccagagatgtttgtgaacagtaatgagtacgaacttggcgtccgtgatgac
ggcgttcctgtgagtgatgtggagcttccagtctgggcgaagaaacctgaagactttgtc
cgcataaacagaatggcattggagagtgagtttgtttcatgtcagcttcaccagtggatc
gatctcatttttggctacaagcagcggggaccagaagcagtccgagcgcttaacgtgttc
aacttcctgtcctatgagggagctgtcaacttagacaatctggatgctgcacagcgtgag
gtgatcgaggctcagatccagctcagtggtcaggtcccctcccagctgctgatagagcca
cacccacctcgctcctccgccatgcacctgtgtttccttccccagagccctctgatgttt
aaggatcagatgcagcaggatgtcatcatggtgctcaagtttccctccaactcacccgtc
acccacgtcgctgcaaacacgctgccccacctcagcataccggcggccgtcaccgtcacg
tgtagccggctgttcgctgtaaaccgctggcacaacacagtgggcctccgtggagcccca
ggatactctctagagcaggctcaccatctacccatagaaatggatcctctcatagcgaac
aactctggtgtgaacaagcgacagatcactgacctggtcgaccaaagcatccagattaac
acgcactgctttgtggttaccgccgacaaccgctacatcctcgtctgcggcttttgggat
aagagcttccgagtttactcgactgaaactggaaagctaacccagatagttttcggccac
tgggacgtagtgacatgtctggcccgctcagagtcctacattggaggagactgctacatc
gtttcaggctccagagacgccacacttctgctgtggtactggagcggacgacatcatatt
atcggggataaccctaataacagtgactaccccgctcccagggcggtgctgacaggacat
gaccatgaggtggtgtgtgtttctgtctgcgcagagctgggactggtcattagtggagcc
aaagagggtccatgtctggtccacaccatcacgggcgacttgttgagggccctggagggt
ccggagctttgcatgcagcctcgcctcatttctgtgtccagtgagggacattgcatcatc
tattatgagagaggtcgcttctgcaacttcagcataaacggcaaactgttggcgcaaatg
gaagtcaacgattcctctcgagccatcttgttaagtagtgacggccagaacctggtgacc
ggaggagataatggagtggtggaggtgtggcaggcgtgtgacttcaaacagctttacatc
tatccaggctgcgacgccggcatacgggccatggacctctcacatgaccagaggacttta
ataacaggcatggcctcgggaagcatcgtagcgttcaacatcgacttcaaccgttggcac
tacgaacaccagaacaggtactga
DBGET
integrated database retrieval system
