KEGG   Cyprinodon variegatus (sheepshead minnow): 107088255
Entry
107088255         CDS       T06110                                 
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
cvg  Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03018  RNA degradation
cvg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cvg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107088255 (lsm4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107088255 (lsm4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cvg03019]
    107088255 (lsm4)
   03041 Spliceosome [BR:cvg03041]
    107088255 (lsm4)
Messenger RNA biogenesis [BR:cvg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107088255 (lsm4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107088255 (lsm4)
Spliceosome [BR:cvg03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    107088255 (lsm4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 107088255
NCBI-ProteinID: XP_015235785
Ensembl: ENSCVAG00000010601
UniProt: A0A3Q2CSY0
LinkDB
Position
Unknown
AA seq 143 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVMSKGRGRGGSQQNKQQGKGRGGPGRGVFGGRGRGMSG
PGRGQQQPSDKKPGKPQGMKNQH
NT seq 432 nt   +upstreamnt  +downstreamnt
atgcttccgttgtctctgttgaaaactgctcagaatcatcccatgttggtagagcttaag
aatggggaaacctacaacggtcacctggtgagctgtgacaactggatgaatataaacctg
agagaagtcatctgcacgtccagggatggagacaagttctggaggatgcctgagtgctac
atcagaggcagcacgatcaagtacctccgaatccctgatgagatcatcgatatggtgaag
gaggaggtgatgtcaaaggggcgcgggcgtggaggatcccagcagaataaacagcagggc
aaaggaagaggaggacctggccgaggtgtgtttggaggccgtggcagagggatgtctggg
cctggacggggtcaacagcagccatctgataagaaaccaggaaaaccacagggaatgaag
aaccaacactga

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