Cyprinodon variegatus (sheepshead minnow): 107088263
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Entry
107088263 CDS
T06110
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03013
Nucleocytoplasmic transport
cvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107088263 (upf1)
03015 mRNA surveillance pathway
107088263 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107088263 (upf1)
Enzymes [BR:
cvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107088263 (upf1)
5.6.2.5 RNA 5'-3' helicase
107088263 (upf1)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107088263 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
107088263 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
NAT10_TcmA_helicase
ATPase
UvrD-helicase
AAA_16
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
107088263
NCBI-ProteinID:
XP_015235796
Ensembl:
ENSCVAG00000010561
UniProt:
A0A3Q2E2N2
LinkDB
All DBs
Position
Unknown
AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFDFTDFTLPSQTQTQGQTQSQLDGQING
PDEGLHNGGMDDSVAKSSQLLGELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHMVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPGATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAPGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNYYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSSAAGRPSNMYFQTHDQIGMIGTGPGQMA
AMNIPIPFNLVMPPMPPPSYLGQTNGPAPGRGAMKGKLGRGGRQRVRGSAHQGTSQGNGP
NSQASQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctggacaccgaagaa
gcggagctgctcggagcggacactcagggctccgagttcgacttcactgacttcaccctt
ccaagccagacgcaaacgcaaggccaaacccagagccagttggacggacagataaatggt
cctgatgagggtcttcacaatggaggaatggatgactctgttgccaaatccagtcaattg
ttgggggagctcaactttgaggaggatgaagaagacacctactacaccaaagatcttcca
atacacgcatgcagctactgtggtatccatgacccagcttgtgtggtgtactgcaacact
agcaagaagtggttctgtaacggccgtggtaacacttctggcagccacattgtgaaccac
atggtgagggccaaatgtaaagaagtgaccctccacaaagatgggcctctgggggagact
gtgctggagtgctacaactgtggctgtcgcaacgtcttcctgcttggcttcatcccagct
aaagcggactctgtggtggtgcttctttgcaggcagccttgtgcaagccagagcagcctg
aaagacatcaactgggacagctcacagtggcagccactgatccaggaccgctgttttctt
tcatggctggtgaagatcccgtcagagcaggagcagctccgagcccgtcagatcactgcc
cagcagatcaataagctggaggaactctggaaggacaatcctggtgctaccttggaagac
ctggagaaacctggagtggatgaagagcctcagcatgtgctgttacgctatgaagatgct
taccagtaccaaaacatctttggccctttggtcaaactggaggctgactatgacaaaaaa
ctcaaggagtcacagactcaagacaatataaccgtcaggtgggacctggggttaaacaaa
aagcggattgcatatttcacccttcccaagacggactcaggtgatatgcggctgatgcag
ggtgatgagatctgcctgcggtacaaaggagacttggctcctctgtggaagggcattggt
cacgtcatcaaagtcccagacaactatggagatgagattgccattgagctgcgcagcagc
gtcggagcgcctgtggaaattccacataatttccaggtggactttgtctggaagtcaact
tcctttgacaggatgcagagcgctctgaagacctttgctgttgacgaaacctccgtctct
ggctacatttaccacaaacttctgggccacgaggttgaagatgtcaccattaagtgccag
ctgccgaaacgcttcactgctccaggcctgcctgacctcaatcactcacaggtttatgca
gtaaagacagtgctgcagaggccactcagtctcatccaggggccgcccggcaccggcaag
actgtcacctctgccacaattgtgtaccacctgtctcgccagggcaatgggccagttctg
gtatgtgctcccagcaacatcgccgtggatcagctgactgaaaagatcgacaaaaccggc
ctgaaggttgtgaggttgtgcgccaagagccgagaggctatagagtctccagtctcgttc
ctggctctccacaaccaaattagtaacatggacagcatgccagagcttcagaagctgcag
cagctgaaggatgagactggagagctgtcatctgctgatgagaagcgctatcgggctctg
aagcgcaccgctgagagggagctgcttatgaatgccgatgtgatctgctgcacctgcgtt
ggagctggagatccccgtttggccaagatgcagttccgatccattctgattgatgagagc
acccaggctacagagcctgagtgtatggtgcccgtggtgctgggagccaagcagctgatc
ctcgtgggtgaccattgccagttgggtcctgttgtgatgtgtaagaaagcagccaaggcg
ggtctgtctcagtctctgtttgagcgactggtggttctggggatccggccaatccgcctg
caggtccagtaccgtatgcatccagctctgagtgccttcccctccaacatcttctatgag
ggctccctgcagaatggcgttactgcagctgatcgcatcaagaaaggttttgacttccag
tggccacagccggataagccaatgttcttctacgtgactcaaggtcaggaggagatagcc
agttctggaacatcatatctgaacaggactgaggctgcaaacgtggaaaaaataaccaca
agactgctgaaggctggagctaaaccagatcagattggcatcatcacgccctacgaaggg
cagcgctcctacctggttcagtacatgcagttcagtggctcccttcacaccaagctgtat
cagcaagtggagattgccagcgtggacgcctttcagggcagagagaaggattttatcatc
ctctcttgtgttcgagccaacgaacatcagggcattggcttcctgaatgacccccgtcgt
ctcaatgtggcactgaccagagcaaagtatggtgtgatcattgtggggaaccctaaagct
ctctccaaacagcccctgtggaacaacctgctgaactactacaaggagcagaaggtcctg
gtggagggacccctcaacaacctcagagagagcctcatgcagttcagcaagcctcgcaaa
ctggtcaacaccatcaaccctggaggacgtttcatgagcaccgccatgtatgacgcccgc
gaggcactcattccaggctccgcctacgaccgcagcagtgctgctggacgtccatccaac
atgtactttcaaacacacgatcagattgggatgattggaaccggaccgggccaaatggct
gcgatgaatatccccatacccttcaacctggtgatgcctccaatgcctccacctagctat
ctgggtcaaactaatggtcctgctccaggccgtggtgctatgaagggcaagcttgggcgt
ggtggaagacagagggtccgtggctcggcgcaccagggcaccagtcagggtaacggacca
aacagccaggccagccaggacggggcctcccagtccttctcccaggggccgctgactcag
ggttacatctctatgagtcagccctctcagatgagccaacctggcctctcccagccagag
ttgtcccaggatagctacctgggcgatgagtttaagtcccagattgacgtggctttatcc
caggactcaacttaccagggtgaacgtgcataccagcatggcggggtgactggactgtca
cagtactaa
DBGET
integrated database retrieval system
