Cyprinodon variegatus (sheepshead minnow): 107088275
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Entry
107088275 CDS
T06110
Symbol
exosc8
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107088275 (exosc8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107088275 (exosc8)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
107088275 (exosc8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
107088275
NCBI-ProteinID:
XP_015235821
Ensembl:
ENSCVAG00000010277
LinkDB
All DBs
Position
Unknown
AA seq
277 aa
AA seq
DB search
MAAGFKTAEPLEYHRSFLKENCRPDGRELFEFRTTTLNIGSISTADGSALVKLGNTTIIC
GIKAELANPTTDAPDKGYIVPNVDLPPLCSSRFRPGPPGEQAQAASQFIADVIESSDLIK
TEDLCIERGKLCWVLYCDIMCLDYDGNILDACIIALLAALKNTQLPEVAVNKETCLPEVD
FEKRQRLRIHRHPVGASFCVFDDSILIVDPTAEEESLSTAHLTVVTDEEGRLCSVHKPGG
TPLSGEKLQECINRATARQREIHKLINKVLDSVKTAQ
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atggcggccggcttcaagactgcagagcctctggagtatcacagaagctttctgaaagaa
aactgtcgacctgatgggcgggagttgtttgagtttaggaccacaacactgaacattggg
tccatatccacagcagatggttcagccctggtgaagctgggaaacacaaccattatttgc
ggcatcaaagcggagctggctaaccctacaacagacgcccctgataaaggttacattgta
cccaacgtggacctgccgcctctgtgttcttcccgttttcgtcccggtccaccaggagaa
caggcccaagctgccagccagtttattgctgatgttattgaaagttctgacctgattaaa
acagaagacttgtgcatcgaaagaggaaagctctgttgggtgctctactgtgacattatg
tgcctggactatgatgggaacattctggatgcttgtatcatcgccctgcttgctgcctta
aagaacacacagcttccagaagttgcagtaaacaaagagacatgtttacccgaggtggat
tttgaaaagcgacagaggcttcgcattcacagacatcctgtcggtgcctctttttgtgtt
ttcgatgactccatactgatcgtagaccccacagctgaggaggagagtctgtcgactgca
catcttaccgtggtcacagatgaggagggccgactctgttcggtacacaaaccaggtgga
actccactgtcaggagagaagctgcaggagtgcatcaaccgagcaacagccagacaacga
gaaatccacaaactcatcaacaaggttctagacagtgtgaagacggcgcagtaa
DBGET
integrated database retrieval system
