Cyprinodon variegatus (sheepshead minnow): 107088439
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Entry
107088439 CDS
T06110
Symbol
exosc2
Name
(RefSeq) exosome complex component RRP4
KO
K03679
exosome complex component RRP4
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107088439 (exosc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107088439 (exosc2)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
107088439 (exosc2)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
107088439 (exosc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
ECR1_N_2
EXOSC1
Motif
Other DBs
NCBI-GeneID:
107088439
NCBI-ProteinID:
XP_015236092
Ensembl:
ENSCVAG00000022260
UniProt:
A0A3Q2DIE6
LinkDB
All DBs
Position
Unknown
AA seq
293 aa
AA seq
DB search
MAVDMRLPTIKTSMSLSVPAAGRKDLVVPGDVITSDTGFMRGHGTYVDEDKLTASVAGEV
QRVDKLICVRPLKTRFNGEVGDVVVGRITEVQQKRWKVETNSRLDSVLLLSSVNLPGGEL
RRRSAEDELTMREYLHEGDLISAEVQSVFSDGALSLHTRSLKYGKLGQGVLVQLSPSLIK
RQKTHFHNLPCGASIILGNNGFVWLYPTPGQQEQEAGGFYTSLEPVSLSDREVISRLRNC
LLALAAHKVLLYDTSVLYCYESSLQHQVKDILKPEVMEEIVMLTQQKLLEQEG
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atggctgtagacatgagattaccaactattaaaacatcaatgtctctgtcagttcctgct
gctggccgaaaggatctggttgtccccggagatgttatcacttcagacaccggctttatg
aggggacatggcacttacgttgatgaagacaagctgacagcatcagttgctggagaggtt
cagagggtggacaagctaatatgtgtcagaccccttaagacaagattcaatggtgaagtt
ggagatgttgtagttggcagaatcacagaggttcaacagaagcgttggaaggtggaaacg
aactccagactggactctgtcctcttgctttcatctgtcaacctgcctggtggagaactg
aggagaagatcagcagaggatgagctcaccatgagagaataccttcatgaaggcgatctc
atcagtgcagaggtgcagtctgtcttctcagatggggccctgtcacttcacactcgcagt
ttaaagtatggaaaattgggtcaaggagtgctggtgcagctttctccttcactaatcaag
aggcagaaaacacatttccataacctaccctgtggcgcatccatcatcttggggaataac
ggctttgtgtggttgtatccaacgccgggacaacaggaacaggaagctgggggcttctac
accagtctggagcctgtaagcctgtcagatcgggaggtgatttctcggctgagaaactgc
ctgctggctttggctgcacataaagtgcttttgtacgacacaagtgttctgtattgctac
gagtcctccctccagcatcaggtcaaggacatcttgaaaccagaagtgatggaggaaatt
gtaatgttgacacaacagaagctgctggaacaggaaggttaa
DBGET
integrated database retrieval system
